CsaV3_1G034240.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCGTTGTCACCGTCGCCTTTGCCGCCGTTGCACTCTCCAATCCTACTTCCTGGCTTCTTTATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATCTGACGGGGAAGAGTCGTCGGAGAATCTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAGGCGACGAACAAGAATGTGTGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGGTGAATGGCCATTGTCCAATTTGCCGGACCTCCGTTTGTATGGTAGTTATTGATCGCGGTGGAAATGCCATGGCTTCTTCTTCATCTTTACTGACCCCCTTCATCAACCAAATTTAATCTCGACACTGATCAACTTTGTGATCACAATGAAACAAGCAAAGTAGTAAATACTAAATATATAGAGTCCTTTTATGTTCTCTTTCCTAATGTTTTGTAGCTACATTGA ATGCCGTTGTCACCGTCGCCTTTGCCGCCGTTGCACTCTCCAATCCTACTTCCTGGCTTCTTTATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATCTGACGGGGAAGAGTCGTCGGAGAATCTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAGGCGACGAACAAGAATGTGTGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGCTACATTGA ATGCCGTTGTCACCGTCGCCTTTGCCGCCGTTGCACTCTCCAATCCTACTTCCTGGCTTCTTTATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATCTGACGGGGAAGAGTCGTCGGAGAATCTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAGGCGACGAACAAGAATGTGTGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGATGAAGACGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGCTACATTGA MPLSPSPLPPLHSPILLPGFFMVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSENLDIEAPIFHYSGVEGDEQECVICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKLH
BLAST of CsaV3_1G034240.1 vs. NCBI nr
Match: XP_011648512.1 (PREDICTED: RING-H2 finger protein ATL67-like [Cucumis sativus]) HSP 1 Score: 209.9 bits (533), Expect = 4.5e-51 Identity = 104/113 (92.04%), Postives = 107/113 (94.69%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. NCBI nr
Match: XP_011659858.1 (PREDICTED: E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus]) HSP 1 Score: 196.1 bits (497), Expect = 6.7e-47 Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. NCBI nr
Match: KGN44779.1 (hypothetical protein Csa_7G387140 [Cucumis sativus]) HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44 Identity = 91/112 (81.25%), Postives = 95/112 (84.82%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. NCBI nr
Match: XP_011659772.1 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus]) HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44 Identity = 91/112 (81.25%), Postives = 95/112 (84.82%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. NCBI nr
Match: KGN65715.1 (hypothetical protein Csa_1G512470 [Cucumis sativus]) HSP 1 Score: 169.5 bits (428), Expect = 6.7e-39 Identity = 80/92 (86.96%), Postives = 83/92 (90.22%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. TAIR10
Match: AT3G62690.1 (AtL5) HSP 1 Score: 57.8 bits (138), Expect = 5.2e-09 Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. TAIR10
Match: AT2G35000.1 (RING/U-box superfamily protein) HSP 1 Score: 57.4 bits (137), Expect = 6.7e-09 Identity = 33/85 (38.82%), Postives = 40/85 (47.06%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. TAIR10
Match: AT4G40070.1 (RING/U-box superfamily protein) HSP 1 Score: 56.6 bits (135), Expect = 1.2e-08 Identity = 30/77 (38.96%), Postives = 41/77 (53.25%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. TAIR10
Match: AT2G35420.1 (RING/U-box superfamily protein) HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08 Identity = 23/52 (44.23%), Postives = 30/52 (57.69%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. TAIR10
Match: AT2G27940.1 (RING/U-box superfamily protein) HSP 1 Score: 55.8 bits (133), Expect = 2.0e-08 Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. Swiss-Prot
Match: sp|Q9LZJ6|ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 9.3e-08 Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. Swiss-Prot
Match: sp|O64763|ATL9_ARATH (E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 1.2e-07 Identity = 33/85 (38.82%), Postives = 40/85 (47.06%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. Swiss-Prot
Match: sp|Q8W571|ATL32_ARATH (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3) HSP 1 Score: 56.6 bits (135), Expect = 2.1e-07 Identity = 30/77 (38.96%), Postives = 41/77 (53.25%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. Swiss-Prot
Match: sp|Q9P7E1|YOF7_SCHPO (Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBP4H10.07 PE=1 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 2.1e-07 Identity = 20/55 (36.36%), Postives = 36/55 (65.45%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. Swiss-Prot
Match: sp|Q6NKR1|ATL28_ARATH (RING-H2 finger protein ATL28 OS=Arabidopsis thaliana OX=3702 GN=ATL28 PE=2 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 2.7e-07 Identity = 23/52 (44.23%), Postives = 30/52 (57.69%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. TrEMBL
Match: tr|A0A0A0K790|A0A0A0K790_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387140 PE=4 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 7.1e-45 Identity = 91/112 (81.25%), Postives = 95/112 (84.82%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. TrEMBL
Match: tr|A0A0A0LUU6|A0A0A0LUU6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G512470 PE=4 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 4.4e-39 Identity = 80/92 (86.96%), Postives = 83/92 (90.22%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. TrEMBL
Match: tr|A0A0A0LY10|A0A0A0LY10_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G514470 PE=4 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 5.4e-37 Identity = 80/112 (71.43%), Postives = 86/112 (76.79%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. TrEMBL
Match: tr|A0A1S3C741|A0A1S3C741_CUCME (RING-H2 finger protein ATL63-like OS=Cucumis melo OX=3656 GN=LOC103497233 PE=4 SV=1) HSP 1 Score: 148.3 bits (373), Expect = 1.1e-32 Identity = 81/111 (72.97%), Postives = 91/111 (81.98%), Query Frame = 0
BLAST of CsaV3_1G034240.1 vs. TrEMBL
Match: tr|A0A1S3C6H2|A0A1S3C6H2_CUCME (RING-H2 finger protein ATL64-like OS=Cucumis melo OX=3656 GN=LOC103497232 PE=4 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 5.8e-31 Identity = 81/112 (72.32%), Postives = 90/112 (80.36%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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