CsaV3_1G028350 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G028350
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Sterile alpha motif (SAM) domain protein
Location	chr1 : 15394898 .. 15396406 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACACTTCCTCTCTCTCTCTCTCAGTATATATAAATCACAATCCTCAAACTGTAAAAGCCATTGTTAAAGCTTTCATCAAACAAACATCCTCTGTCTCCTCCAATGGACTGGTTCTCTTGGCTCTCAAGAACCGGCCTCGATCCACTTTACACTTATGAATACGGTCTCCTCTTTGCCCGTAATGCCCTCAAACCCGAAGACATTCCTCGTTTCAACCACCATTTTCTTCAGAAAATCGGCATCTCCATCGCCAAACACCGCCTCGAGATTCTCAAACTCGCCAAATCCCACACCCACCAACCCAATCTCAACAATCCCCTCATCTCCGCTTTCTTCAAGACCAAAATCTGTCTCAGAAACTGTCTCCGCCGCCTAATTTCCCCCTCCCCCGCCCTGGAGAAGCCCATCATTTCCCCTGAGCCACCCCCCTCGTCCCTCGACGAGCCTAAGGTTAAGGTCAAGGAGGTCCTCAAACCCCCGAGACGACGGAGTAAACACGTGTCGCTGTCCGGACCGTTGGATAGAACGCACGAGAAGTTCGTGATGAGTAGTAAGAGCTTGAAGTTATCTGGGCCGTTGGATAGAAAAGAGAGAGCGCCGTCGTCGCCGTCACCGTCGCCGCTGCCGCCTATGTTTACTAGAAGCCCAAGAACGTCTGGGCCTTTAGATGGGAGAATATCGGATTGGAGTTTAAGTAACAAAAGCCCAAAAATGAATGGGCCGCCACAAGGGAGAATGATGAGGCTGATTCCTCCAAGTCGAAGCCCAAGAGTATCTGGGCCGTTGGATGGAAGAGATGGAAGCCCAAGAATTTGTTGTCGGTGTAATAGGGAAAGAATGGAAAGTGAGGATGATTACCATTCCTTGTGGGTTTCGTTGTTTTATGACATGAAGCCAACTTGAATTCATGAATGTTCTTCTCTTTTTTCTTTTCTTCTTTTTATATGTGATGTGTGCATTTGATTTGAATGCCAATGCAATGCAACTAAATGAAAGTTGTCTATTGAATTTTTTGTACAACACAAGCTTGTTTTTTTAATTGATTTGGAATTAATATATACAATTTTCTGATCTAAATAACTTATTATATAGTTTTATGTGAACTTTTTGTTGCGATTAATGCTAAAATATATAGAATTGATGGCATTAATATTCTGTGGTTTTTAACGTTGCCTATTTTTCAATTTCACACTCGAATTCCAAGGTTCAATGCGTTTTAGAGTGGGCTTTAAAAACGAATCACTGAATTACAGGCCCACTAAAAAAGCCTATTAAAGCCCACATGCAAGGTCCAAAATCCTTATGCAGTTGCTCCTATTGGTAATTCAAATGAAACAAACGGAACGTTTAATTTTTATTTTATTTTTGGACTTTATGGACATATATTATTGTATTAATTAGGTTTTTCACTTTTTAACTTTGTTTAATTACACAACCAATAAATAGATGTGTTTAATTACACAATTCTCTCTTTAAATTTTCTATTTTGTTCGGGAAAAACTTTGAT

mRNA sequence

ATGGACTGGTTCTCTTGGCTCTCAAGAACCGGCCTCGATCCACTTTACACTTATGAATACGGTCTCCTCTTTGCCCGTAATGCCCTCAAACCCGAAGACATTCCTCGTTTCAACCACCATTTTCTTCAGAAAATCGGCATCTCCATCGCCAAACACCGCCTCGAGATTCTCAAACTCGCCAAATCCCACACCCACCAACCCAATCTCAACAATCCCCTCATCTCCGCTTTCTTCAAGACCAAAATCTGTCTCAGAAACTGTCTCCGCCGCCTAATTTCCCCCTCCCCCGCCCTGGAGAAGCCCATCATTTCCCCTGAGCCACCCCCCTCGTCCCTCGACGAGCCTAAGGTTAAGGTCAAGGAGGTCCTCAAACCCCCGAGACGACGGAGTAAACACGTGTCGCTGTCCGGACCGTTGGATAGAACGCACGAGAAGTTCGTGATGAGTAGTAAGAGCTTGAAGTTATCTGGGCCGTTGGATAGAAAAGAGAGAGCGCCGTCGTCGCCGTCACCGTCGCCGCTGCCGCCTATGTTTACTAGAAGCCCAAGAACGTCTGGGCCTTTAGATGGGAGAATATCGGATTGGAGTTTAAGTAACAAAAGCCCAAAAATGAATGGGCCGCCACAAGGGAGAATGATGAGGCTGATTCCTCCAAGTCGAAGCCCAAGAGTATCTGGGCCGTTGGATGGAAGAGATGGAAGCCCAAGAATTTGTTGTCGGTGTAATAGGGAAAGAATGGAAAGTGAGGATGATTACCATTCCTTGTGGGTTTCGTTGTTTTATGACATGAAGCCAACTTGA

Coding sequence (CDS)

ATGGACTGGTTCTCTTGGCTCTCAAGAACCGGCCTCGATCCACTTTACACTTATGAATACGGTCTCCTCTTTGCCCGTAATGCCCTCAAACCCGAAGACATTCCTCGTTTCAACCACCATTTTCTTCAGAAAATCGGCATCTCCATCGCCAAACACCGCCTCGAGATTCTCAAACTCGCCAAATCCCACACCCACCAACCCAATCTCAACAATCCCCTCATCTCCGCTTTCTTCAAGACCAAAATCTGTCTCAGAAACTGTCTCCGCCGCCTAATTTCCCCCTCCCCCGCCCTGGAGAAGCCCATCATTTCCCCTGAGCCACCCCCCTCGTCCCTCGACGAGCCTAAGGTTAAGGTCAAGGAGGTCCTCAAACCCCCGAGACGACGGAGTAAACACGTGTCGCTGTCCGGACCGTTGGATAGAACGCACGAGAAGTTCGTGATGAGTAGTAAGAGCTTGAAGTTATCTGGGCCGTTGGATAGAAAAGAGAGAGCGCCGTCGTCGCCGTCACCGTCGCCGCTGCCGCCTATGTTTACTAGAAGCCCAAGAACGTCTGGGCCTTTAGATGGGAGAATATCGGATTGGAGTTTAAGTAACAAAAGCCCAAAAATGAATGGGCCGCCACAAGGGAGAATGATGAGGCTGATTCCTCCAAGTCGAAGCCCAAGAGTATCTGGGCCGTTGGATGGAAGAGATGGAAGCCCAAGAATTTGTTGTCGGTGTAATAGGGAAAGAATGGAAAGTGAGGATGATTACCATTCCTTGTGGGTTTCGTTGTTTTATGACATGAAGCCAACTTGA

Protein sequence

MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLAKSHTHQPNLNNPLISAFFKTKICLRNCLRRLISPSPALEKPIISPEPPPSSLDEPKVKVKEVLKPPRRRSKHVSLSGPLDRTHEKFVMSSKSLKLSGPLDRKERAPSSPSPSPLPPMFTRSPRTSGPLDGRISDWSLSNKSPKMNGPPQGRMMRLIPPSRSPRVSGPLDGRDGSPRICCRCNRERMESEDDYHSLWVSLFYDMKPT

Homology

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BLAST of CsaV3_1G028350 vs. NCBI nr
Match: XP_004146740.1 (PREDICTED: uncharacterized protein LOC101205285 [Cucumis sativus] >KGN65198.1 hypothetical protein Csa_1G264010 [Cucumis sativus])

HSP 1 Score: 438.7 bits (1127), Expect = 1.4e-119
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0


Query: 1   MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60
           MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60

Query: 61  KSHTHQPNLNNPLISAFFKTKICLRNCLRRLISPSPALEKPIISPEPPPSSLDEPKVKVK 120
           KSHTHQPNLNNPLISAFFKTKICLRNCLRRLISPSPALEKPIISPEPPPSSLDEPKVKVK
Sbjct: 61  KSHTHQPNLNNPLISAFFKTKICLRNCLRRLISPSPALEKPIISPEPPPSSLDEPKVKVK 120

Query: 121 EVLKPPRRRSKHVSLSGPLDRTHEKFVMSXXXXXXXXXXXXXERAPSSPSPSPLPPMFTR 180
           EVLKPPRRRSKHVSLSGPLDRTHEKFVMSXXXXXXXXXXXXXERAPSSPSPSPLPPMFTR
Sbjct: 121 EVLKPPRRRSKHVSLSGPLDRTHEKFVMSXXXXXXXXXXXXXERAPSSPSPSPLPPMFTR 180

Query: 181 SPRTSGPLDGRISDWSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSPRICCR 240
           SPRTSGPLDGRISDWSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSPRICCR
Sbjct: 181 SPRTSGPLDGRISDWSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSPRICCR 240

Query: 241 CNRERMESEDDYHSLWVSLFYDMKPT 267
           CNRERMESEDDYHSLWVSLFYDMKPT
Sbjct: 241 CNRERMESEDDYHSLWVSLFYDMKPT 266

[Close]

BLAST of CsaV3_1G028350 vs. NCBI nr
Match: XP_008443922.1 (PREDICTED: uncharacterized protein LOC103487398 [Cucumis melo])

HSP 1 Score: 400.6 bits (1028), Expect = 4.2e-108
Identity = 250/267 (93.63%), Postives = 252/267 (94.38%), Query Frame = 0


Query: 1   MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60
           MDWFSWLSRTGLDPL+TYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSRTGLDPLHTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60

Query: 61  KSH-THQPNLNNPLISAFFKTKICLRNCLRRLISPSPALEKPIISPEPPPSSLDEPKVKV 120
           KSH THQPNLNNPLISAFFKTKICLRNCLRRLISPSPA +KPIISPEPPPSSLDEPKVKV
Sbjct: 61  KSHTTHQPNLNNPLISAFFKTKICLRNCLRRLISPSPAPDKPIISPEPPPSSLDEPKVKV 120

Query: 121 KEVLKPPRRRSKHVSLSGPLDRTHEKFVMSXXXXXXXXXXXXXERAPSSPSPSPLPPMFT 180
           KEVLKPPRRRSKHVSLSGPLDRTHEKFVMSXXXXXXXXXXXXXER P         PMF 
Sbjct: 121 KEVLKPPRRRSKHVSLSGPLDRTHEKFVMSXXXXXXXXXXXXXERPPXXXXXXXXXPMFP 180

Query: 181 RSPRTSGPLDGRISDWSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSPRICC 240
           RSPRTSGPLDGRISDW LS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSPRICC
Sbjct: 181 RSPRTSGPLDGRISDWGLSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSPRICC 240

Query: 241 RCNRERMESEDDYHSLWVSLFYDMKPT 267
           RCNRERMESEDDYHSLWVSLFYDMKPT
Sbjct: 241 RCNRERMESEDDYHSLWVSLFYDMKPT 267

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BLAST of CsaV3_1G028350 vs. NCBI nr
Match: XP_022960905.1 (uncharacterized protein LOC111461567 [Cucurbita moschata])

HSP 1 Score: 256.1 bits (653), Expect = 1.3e-64
Identity = 193/275 (70.18%), Postives = 210/275 (76.36%), Query Frame = 0


Query: 1   MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60
           MDWFSWLSRTGLDPL+TYEYGL+FARN L+PEDIPRFNH FLQKIG+SIAKHRLEILKLA
Sbjct: 20  MDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDFLQKIGVSIAKHRLEILKLA 79

Query: 61  KSHTHQPNLNNPLISAFFKTKICLRNCLRRLISPSPALEK-------PIISPEPPPSSLD 120
           K    +      L+SAF KTK CLRNCLR+LI  +   EK        ++SPEP   S D
Sbjct: 80  KCDREEATRKKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKGIFREDAAVVSPEPITYSED 139

Query: 121 -EPKVKVKEVLKPPRRRSKHVSLSGPLD-RTHEKFVMSXXXXXXXXXXXXXERAPSSPSP 180
              K++VKEVLKPP+RRSKHVSLSGPLD RTHEK + +XXXXXXXXXXXX ER       
Sbjct: 140 LSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNXXXXXXXXXXXXKER------- 199

Query: 181 SPLPPMFTRSPRTSGPLDGRISDWSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
               PMF RSPR S             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 200 ----PMFPRSPR-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 259

Query: 241 DGSPRICCRCNRERMESEDDYHSLWVSLFYDMKPT 267
            GSPRICCRCNRERME++DDYHSLWVSLFYDMKPT
Sbjct: 260 XGSPRICCRCNRERMETDDDYHSLWVSLFYDMKPT 282

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BLAST of CsaV3_1G028350 vs. NCBI nr
Match: XP_023516525.1 (uncharacterized protein LOC111780375 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 255.4 bits (651), Expect = 2.2e-64
Identity = 193/275 (70.18%), Postives = 210/275 (76.36%), Query Frame = 0


Query: 1   MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60
           MDWFSWLSRTGLDPL+TYEYGL+FARN L+PEDIPRFNH FLQKIG+SIAKHRLEILKLA
Sbjct: 20  MDWFSWLSRTGLDPLHTYEYGLVFARNGLRPEDIPRFNHDFLQKIGVSIAKHRLEILKLA 79

Query: 61  KSHTHQPNLNNPLISAFFKTKICLRNCLRRLISPSPALEK-------PIISPEPPPSSLD 120
           K    +      L+SAF KTK CLRNCLR+LI  +   EK        +ISPEP   S D
Sbjct: 80  KCDREEATQKKLLLSAFAKTKNCLRNCLRKLIFTNAKSEKGIFREDAAVISPEPITYSED 139

Query: 121 -EPKVKVKEVLKPPRRRSKHVSLSGPLD-RTHEKFVMSXXXXXXXXXXXXXERAPSSPSP 180
              K++VKEVLKPP+RRSKHVSLSGPLD RTHEK + +XXXXXXXXXXXX ER       
Sbjct: 140 LSRKLEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNXXXXXXXXXXXXKER------- 199

Query: 181 SPLPPMFTRSPRTSGPLDGRISDWSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
               PMF RSPR S             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 200 ----PMFPRSPR-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 259

Query: 241 DGSPRICCRCNRERMESEDDYHSLWVSLFYDMKPT 267
            GSP+ICCRCNRERME++DDYHSLWVSLFYDMKPT
Sbjct: 260 XGSPKICCRCNRERMETDDDYHSLWVSLFYDMKPT 282

[Close]

BLAST of CsaV3_1G028350 vs. NCBI nr
Match: XP_022987839.1 (uncharacterized protein LOC111485262 [Cucurbita maxima])

HSP 1 Score: 248.8 bits (634), Expect = 2.0e-62
Identity = 191/275 (69.45%), Postives = 206/275 (74.91%), Query Frame = 0


Query: 1   MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60
           MDWFSWLSRTGLDPL+TYEYGL+FARN LKPEDIPRFNH FLQ+IG+SIAKHRLEILKLA
Sbjct: 1   MDWFSWLSRTGLDPLHTYEYGLVFARNGLKPEDIPRFNHDFLQRIGVSIAKHRLEILKLA 60

Query: 61  KSHTHQPNLNNPLISAFFKTKICLRNCLRRLISPSPALEK-------PIISPEPPPSSLD 120
           K    +      L+SA  KTK CLRNCLR+LI  +   EK        +ISPEP   S D
Sbjct: 61  KCDREEATQKKLLLSALAKTKNCLRNCLRKLIFTNAKSEKGIFREDAAVISPEPITYSED 120

Query: 121 -EPKVKVKEVLKPPRRRSKHVSLSGPLD-RTHEKFVMSXXXXXXXXXXXXXERAPSSPSP 180
              K +VKEVLKPP+RRSKHVSLSGPLD RTHEK + +XXXXXXXXXXXX ER       
Sbjct: 121 LSRKQEVKEVLKPPKRRSKHVSLSGPLDGRTHEKLMTNXXXXXXXXXXXXKER------- 180

Query: 181 SPLPPMFTRSPRTSGPLDGRISDWSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
               PM  RSP                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 ----PMVPRSP-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 DGSPRICCRCNRERMESEDDYHSLWVSLFYDMKPT 267
           DGSPRICCRCNRERME++DDYHSLWVSLFYDMKPT
Sbjct: 241 DGSPRICCRCNRERMETDDDYHSLWVSLFYDMKPT 263

[Close]

BLAST of CsaV3_1G028350 vs. TAIR10
Match: AT2G12462.1 (BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G15760.1))

HSP 1 Score: 104.8 bits (260), Expect = 8.6e-23
Identity = 65/163 (39.88%), Postives = 96/163 (58.90%), Query Frame = 0


Query: 1   MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60
           MDWFSWLS+T LDP  +YEYGL+FA+  L+ EDI  FNH+FL+++G+++ KHR+EILKL+
Sbjct: 1   MDWFSWLSKTDLDPTLSYEYGLIFAQKKLQGEDIALFNHNFLRRLGVTVTKHRVEILKLS 60

Query: 61  K-------SHTHQPNLNNPLISAFFKTKICLRNCLRRLIS-PSPALEKPIISPEPPPSSL 120
           K       S+ H+P ++  LIS   K    + N L + +S    A+ +P+   + PP + 
Sbjct: 61  KRETQALSSYNHRP-VSAKLISVVIKATKSVGNRLNKWLSLGGTAVVEPLKEKQSPPPAY 120

Query: 121 --------DEPKVK----VKEVLKPPRRRSKHVSLSGPLDRTH 144
                   +  KV     V +V + P  + K +  SGPLDR H
Sbjct: 121 RTGAFLTGNNNKVNAEKAVVQVERLPVIKRKRIVKSGPLDRNH 162

[Close]

BLAST of CsaV3_1G028350 vs. TAIR10
Match: AT1G15760.1 (Sterile alpha motif (SAM) domain-containing protein)

HSP 1 Score: 92.4 bits (228), Expect = 4.4e-19
Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 3  WFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA-K 62
          WFSWLSRT L+P   +EYGL F++N L+ EDI  F+H FLQ +GISIAKHRLEILKLA +
Sbjct: 5  WFSWLSRTNLEPSLIHEYGLSFSQNELEHEDISYFDHEFLQSMGISIAKHRLEILKLARR 64

Query: 63 SHTHQPNLNNPLIS----AFFKTKICLRNCLRRLI 93
             + P L +  IS    A  KT+ CL + +R  I
Sbjct: 65 DRKNSPPLTSRSISRVVTAIKKTRKCLSDHVRAWI 99

[Close]

BLAST of CsaV3_1G028350 vs. TAIR10
Match: AT1G80520.1 (Sterile alpha motif (SAM) domain-containing protein)

HSP 1 Score: 91.7 bits (226), Expect = 7.6e-19
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1  MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60
          MDWFSWLSRT L+    YEYGL F+ N L+ EDI  FNH FLQ +GISIAKHRLEILKLA
Sbjct: 1  MDWFSWLSRTNLEASLIYEYGLSFSNNELEYEDIAYFNHEFLQSMGISIAKHRLEILKLA 60

Query: 61 K 62
          +
Sbjct: 61 R 61

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BLAST of CsaV3_1G028350 vs. TrEMBL
Match: tr|A0A0A0LTT1|A0A0A0LTT1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264010 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 9.2e-120
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0


Query: 1   MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60
           MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60

Query: 61  KSHTHQPNLNNPLISAFFKTKICLRNCLRRLISPSPALEKPIISPEPPPSSLDEPKVKVK 120
           KSHTHQPNLNNPLISAFFKTKICLRNCLRRLISPSPALEKPIISPEPPPSSLDEPKVKVK
Sbjct: 61  KSHTHQPNLNNPLISAFFKTKICLRNCLRRLISPSPALEKPIISPEPPPSSLDEPKVKVK 120

Query: 121 EVLKPPRRRSKHVSLSGPLDRTHEKFVMSXXXXXXXXXXXXXERAPSSPSPSPLPPMFTR 180
           EVLKPPRRRSKHVSLSGPLDRTHEKFVMSXXXXXXXXXXXXXERAPSSPSPSPLPPMFTR
Sbjct: 121 EVLKPPRRRSKHVSLSGPLDRTHEKFVMSXXXXXXXXXXXXXERAPSSPSPSPLPPMFTR 180

Query: 181 SPRTSGPLDGRISDWSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSPRICCR 240
           SPRTSGPLDGRISDWSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSPRICCR
Sbjct: 181 SPRTSGPLDGRISDWSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSPRICCR 240

Query: 241 CNRERMESEDDYHSLWVSLFYDMKPT 267
           CNRERMESEDDYHSLWVSLFYDMKPT
Sbjct: 241 CNRERMESEDDYHSLWVSLFYDMKPT 266

[Close]

BLAST of CsaV3_1G028350 vs. TrEMBL
Match: tr|A0A1S3B951|A0A1S3B951_CUCME (uncharacterized protein LOC103487398 OS=Cucumis melo OX=3656 GN=LOC103487398 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 2.8e-108
Identity = 250/267 (93.63%), Postives = 252/267 (94.38%), Query Frame = 0


Query: 1   MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60
           MDWFSWLSRTGLDPL+TYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA
Sbjct: 1   MDWFSWLSRTGLDPLHTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60

Query: 61  KSH-THQPNLNNPLISAFFKTKICLRNCLRRLISPSPALEKPIISPEPPPSSLDEPKVKV 120
           KSH THQPNLNNPLISAFFKTKICLRNCLRRLISPSPA +KPIISPEPPPSSLDEPKVKV
Sbjct: 61  KSHTTHQPNLNNPLISAFFKTKICLRNCLRRLISPSPAPDKPIISPEPPPSSLDEPKVKV 120

Query: 121 KEVLKPPRRRSKHVSLSGPLDRTHEKFVMSXXXXXXXXXXXXXERAPSSPSPSPLPPMFT 180
           KEVLKPPRRRSKHVSLSGPLDRTHEKFVMSXXXXXXXXXXXXXER P         PMF 
Sbjct: 121 KEVLKPPRRRSKHVSLSGPLDRTHEKFVMSXXXXXXXXXXXXXERPPXXXXXXXXXPMFP 180

Query: 181 RSPRTSGPLDGRISDWSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSPRICC 240
           RSPRTSGPLDGRISDW LS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSPRICC
Sbjct: 181 RSPRTSGPLDGRISDWGLSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSPRICC 240

Query: 241 RCNRERMESEDDYHSLWVSLFYDMKPT 267
           RCNRERMESEDDYHSLWVSLFYDMKPT
Sbjct: 241 RCNRERMESEDDYHSLWVSLFYDMKPT 267

[Close]

BLAST of CsaV3_1G028350 vs. TrEMBL
Match: tr|A0A151SR97|A0A151SR97_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_003606 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.0e-26
Identity = 115/292 (39.38%), Postives = 138/292 (47.26%), Query Frame = 0


Query: 1   MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60
           MDWFSWLS+T L+P   Y+YGL FARN L+ ED   FNH FLQ +GISIAKHRLEILKL 
Sbjct: 1   MDWFSWLSKTTLEPSLIYDYGLTFARNELQVEDACFFNHEFLQSMGISIAKHRLEILKLV 60

Query: 61  KSHTHQPNLNNPLISAFFKTKICLRNCLRRLIS----PSPALEKPIISPEPPPS-SLDEP 120
           K      +  N  +S   K   CLR C+ R +S      P++  P+ S  PPP  +  E 
Sbjct: 61  KKEEGAASRPNKKLSGVIKK--CLRKCMNRFVSREDHKMPSM--PVTSVPPPPEINWYEG 120

Query: 121 KVKVKEVLK----------------PPRRRSKHVSLSGPLD----RTHEKFVMSXXXXXX 180
           KVK   V K                PP  RS+ ++LSGPLD      HEK    XXXXXX
Sbjct: 121 KVKGSHVRKQQGSEDILKEDKPLPVPPMYRSRTIALSGPLDGGRMHMHEKXXXXXXXXXX 180

Query: 181 XXXXXXXERAPSSPSPSPLPPMFTRSPRTSGPLDGRISDWSLSXXXXXXXXXXXXXXXXX 240
           XXXXXX      S           RSP  S P+D R    + S                 
Sbjct: 181 XXXXXXMHERMMS---------INRSPLMSRPIDARFVATTKSPRISASLYVNRSPRLPT 240

Query: 241 XXXXXXXXXXXXXXXXDGSPRICCRCNRERMESE-DDYHSLWVSLFYDMKPT 267
                             SP  C   N+ R + + DD H+LW SLF D+KPT
Sbjct: 241 RAETE-------------SPMGCSPYNKPRGDLDFDDDHALWPSLFQDLKPT 266

[Close]

BLAST of CsaV3_1G028350 vs. TrEMBL
Match: tr|V4U0S2|V4U0S2_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009170mg PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.1e-24
Identity = 105/283 (37.10%), Postives = 137/283 (48.41%), Query Frame = 0


Query: 1   MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60
           MDWFSWLSRT L+P   YEYGL F RN L+ ED+  FNH FLQ +GIS+AKHRLEILKLA
Sbjct: 27  MDWFSWLSRTNLEPSLVYEYGLAFVRNELQKEDLSYFNHEFLQSMGISVAKHRLEILKLA 86

Query: 61  KSHTH-QPNLNNPLISAFFKTKICLRNCLRRLISPSPALEKPIISPEP------------ 120
           +      P   + L+SA  KT+  +  CL +LI       K +  PEP            
Sbjct: 87  RKEVGVGPKSFSKLVSALNKTRKNIAKCLHKLIFHDVVSIKRLPEPEPTLYQEQCKGAIM 146

Query: 121 PPSSLDEPKVKVKEVLKPPRRRSKHVSLSGPLDRTHEKFVMSXXXXXXXXXXXXXERAPS 180
             +   E ++KV++ +  PRR +K   L G + + +                   ERA  
Sbjct: 147 TRTYKSEKEIKVEKPVLKPRRIAKSGPLDGRVAQENLTVANRSLKLSGPLDRSMQERA-- 206

Query: 181 SPSPSPLPPMFT-RSPRTSGPLDGRISDWSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
                    MFT R+P  SGP+DGR+      XXXXXXXXXX                  
Sbjct: 207 ---------MFTYRTP--SGPIDGRMXXXXXXXXXXXXXXXXP----------------- 266

Query: 241 XXXXXDGSPRICCRCNRERMESED---DYHSLWVSLFYDMKPT 267
                  SPR+    ++ER+ S     D  +LW +LF D+KPT
Sbjct: 267 -------SPRVYADSSKERLSSGGGGFDDQTLWATLFQDLKPT 272

[Close]

BLAST of CsaV3_1G028350 vs. TrEMBL
Match: tr|A0A2C9UM11|A0A2C9UM11_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G121200 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 9.5e-24
Identity = 71/145 (48.97%), Postives = 89/145 (61.38%), Query Frame = 0


Query: 1   MDWFSWLSRTGLDPLYTYEYGLLFARNALKPEDIPRFNHHFLQKIGISIAKHRLEILKLA 60
           MDWFSWLSR+GL+P  TYEYGL FARN L+ ED+  FNH FLQ +GIS+AKHRLEILKLA
Sbjct: 1   MDWFSWLSRSGLEPSLTYEYGLAFARNELQEEDLSHFNHEFLQSMGISVAKHRLEILKLA 60

Query: 61  KSHTHQPNLN-NPLISAFFKTKICLRNCLRRLISPSPALEKPIISPEPPPSSLDEPKVKV 120
           K          +  I A  KTK  L+ C+ +L+    ++ K +  PEP     DE    V
Sbjct: 61  KKEVGANTTGISKFILAINKTKKSLKKCISKLVFHEESVFKAL--PEPLSRYRDEQSTGV 120

Query: 121 ----KEVLKPPRRRSKHVSLSGPLD 141
                +V KPP  R++  + SGPLD
Sbjct: 121 FTRKFQVEKPPVLRTRIQAKSGPLD 143

The following BLAST results are available for this feature:

BLAST of CsaV3_1G028350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146740.1	1.4e-119	100.00	PREDICTED: uncharacterized protein LOC101205285 [Cucumis sativus] >KGN65198.1 hy...	[more]
XP_008443922.1	4.2e-108	93.63	PREDICTED: uncharacterized protein LOC103487398 [Cucumis melo]	[more]
XP_022960905.1	1.3e-64	70.18	uncharacterized protein LOC111461567 [Cucurbita moschata]	[more]
XP_023516525.1	2.2e-64	70.18	uncharacterized protein LOC111780375 [Cucurbita pepo subsp. pepo]	[more]
XP_022987839.1	2.0e-62	69.45	uncharacterized protein LOC111485262 [Cucurbita maxima]	[more]

BLAST of CsaV3_1G028350 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G12462.1	8.6e-23	39.88	BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-con...	[more]
AT1G15760.1	4.4e-19	53.68	Sterile alpha motif (SAM) domain-containing protein	[more]
AT1G80520.1	7.6e-19	70.49	Sterile alpha motif (SAM) domain-containing protein	[more]

BLAST of CsaV3_1G028350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G028350 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTT1\|A0A0A0LTT1_CUCSA	9.2e-120	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264010 PE=4 SV=1	[more]
tr\|A0A1S3B951\|A0A1S3B951_CUCME	2.8e-108	93.63	uncharacterized protein LOC103487398 OS=Cucumis melo OX=3656 GN=LOC103487398 PE=...	[more]
tr\|A0A151SR97\|A0A151SR97_CAJCA	2.0e-26	39.38	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_003606 PE=4 SV=1	[more]
tr\|V4U0S2\|V4U0S2_9ROSI	1.1e-24	37.10	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009170mg PE=4 ...	[more]
tr\|A0A2C9UM11\|A0A2C9UM11_MANES	9.5e-24	48.97	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G121200 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013761	SAM/pointed_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G028350.1	CsaV3_1G028350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.150.50		coord: 1..70 e-value: 3.8E-8 score: 34.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..235
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..205
None	No IPR available	PANTHER	PTHR33915:SF3	SUBFAMILY NOT NAMED	coord: 1..266
None	No IPR available	PANTHER	PTHR33915	FAMILY NOT NAMED	coord: 1..266
None	No IPR available	CDD	cd09487	SAM_superfamily	coord: 2..61 e-value: 5.44251E-8 score: 47.2341
IPR013761	Sterile alpha motif/pointed domain superfamily	SUPERFAMILY	SSF47769	SAM/Pointed domain	coord: 5..65

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G028350	CSPI01G17110	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G028350	Cucsa.350560	Cucumber (Gy14) v1	cgycucB533
CsaV3_1G028350	CmaCh11G005060	Cucurbita maxima (Rimu)	cmacucB0111
CsaV3_1G028350	CmaCh10G005060	Cucurbita maxima (Rimu)	cmacucB0067
CsaV3_1G028350	CmoCh10G005410	Cucurbita moschata (Rifu)	cmocucB0054
CsaV3_1G028350	Cp4.1LG18g05220	Cucurbita pepo (Zucchini)	cpecucB0429
CsaV3_1G028350	Cp4.1LG04g09190	Cucurbita pepo (Zucchini)	cpecucB0796
CsaV3_1G028350	CsGy1G017330	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G028350	Carg09956	Silver-seed gourd	carcucB0142
CsaV3_1G028350	Carg27191	Silver-seed gourd	carcucB0609
CsaV3_1G028350	Cla018682	Watermelon (97103) v1	cucwmB091
CsaV3_1G028350	MELO3C010276	Melon (DHL92) v3.5.1	cucmeB054
CsaV3_1G028350	ClCG06G011890	Watermelon (Charleston Gray)	cucwcgB074
CsaV3_1G028350	Lsi06G010680	Bottle gourd (USVL1VR-Ls)	cuclsiB084
CsaV3_1G028350	MELO3C010276.2	Melon (DHL92) v3.6.1	cucmedB052
CsaV3_1G028350	Cla97C06G121070	Watermelon (97103) v2	cucwmbB063
CsaV3_1G028350	Bhi02G000731	Wax gourd	cucwgoB104

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G028350	Cucurbita moschata (Rifu)	cmocucB0100
CsaV3_1G028350	Bottle gourd (USVL1VR-Ls)	cuclsiB073