CsaV3_1G017300 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G017300
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionagamous-like MADS-box protein AGL80
Locationchr1 : 11853581 .. 11854313 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCAGTTGCATGCGATGACAAGAAAGAAGGTGAAACTTGCATACATTACAAATGATGCATCAAGAAAAGCCACATTCAAGAAAAGGAAAAAGGGTTTACTGAAGAAGCTGGCTGAGCTTACCACTCTATGTGGCATTGAGGCATGTGCTATAATCTTCAATCCCTCCAATTCACAACCTGACCTTTGGCCCTCCACTCTAGGCCTCCAAAAGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAATGTAAGAAGATGGTCAACCAAGAGACCTTCCTTCGTGATCGTATTGCAAAGGCTGCTGACCAACTCAAGAAGCTACAAAGGGAGAATCGTGAGAAGGAGATCACTCGAGTCATGTTTCAAAGCCTCGTTGCTGGAGCAACTCCGCCGCTAGATCTCAATGTCATCGATTTGAATGACCTTGGTTGGTTGGTTGATCAAAAGATGGCTGATATTGGTAAGAGAATGGAGTTGCTTACAGTAAATCGATCGTCACGTGTGGCGACAAATGAGCCGTCGTGGTTTATGGAGATGGTGAATCAAGGAGCTAATGATGAAGATCATATGGGATTCAATATTGGAGATGATGTGATTCAACTTCCTAGCTTTGGGGAGGATGATAATCATGGTACTTTTTGGTCAAATAATAATGTCATTTTCCCTTGAAAGGTTTGGGATGGTTTGTCATTAATTTCTCAAACTAGATTCCTCAATTAATGTTTAG

mRNA sequence

ATGACAAGAAAGAAGGTGAAACTTGCATACATTACAAATGATGCATCAAGAAAAGCCACATTCAAGAAAAGGAAAAAGGGTTTACTGAAGAAGCTGGCTGAGCTTACCACTCTATGTGGCATTGAGGCATGTGCTATAATCTTCAATCCCTCCAATTCACAACCTGACCTTTGGCCCTCCACTCTAGGCCTCCAAAAGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAATGTAAGAAGATGGTCAACCAAGAGACCTTCCTTCGTGATCGTATTGCAAAGGCTGCTGACCAACTCAAGAAGCTACAAAGGGAGAATCGTGAGAAGGAGATCACTCGAGTCATGTTTCAAAGCCTCGTTGCTGGAGCAACTCCGCCGCTAGATCTCAATGTCATCGATTTGAATGACCTTGGTTGGTTGGTTGATCAAAAGATGGCTGATATTGGTAAGAGAATGGAGTTGCTTACAGTAAATCGATCGTCACGTGTGGCGACAAATGAGCCGTCGTGGTTTATGGAGATGGTGAATCAAGGAGCTAATGATGAAGATCATATGGGATTCAATATTGGAGATGATGTGATTCAACTTCCTAGCTTTGGGGAGGATGATAATCATGATTCCTCAATTAATGTTTAG

Coding sequence (CDS)

ATGACAAGAAAGAAGGTGAAACTTGCATACATTACAAATGATGCATCAAGAAAAGCCACATTCAAGAAAAGGAAAAAGGGTTTACTGAAGAAGCTGGCTGAGCTTACCACTCTATGTGGCATTGAGGCATGTGCTATAATCTTCAATCCCTCCAATTCACAACCTGACCTTTGGCCCTCCACTCTAGGCCTCCAAAAGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAATGTAAGAAGATGGTCAACCAAGAGACCTTCCTTCGTGATCGTATTGCAAAGGCTGCTGACCAACTCAAGAAGCTACAAAGGGAGAATCGTGAGAAGGAGATCACTCGAGTCATGTTTCAAAGCCTCGTTGCTGGAGCAACTCCGCCGCTAGATCTCAATGTCATCGATTTGAATGACCTTGGTTGGTTGGTTGATCAAAAGATGGCTGATATTGGTAAGAGAATGGAGTTGCTTACAGTAAATCGATCGTCACGTGTGGCGACAAATGAGCCGTCGTGGTTTATGGAGATGGTGAATCAAGGAGCTAATGATGAAGATCATATGGGATTCAATATTGGAGATGATGTGATTCAACTTCCTAGCTTTGGGGAGGATGATAATCATGATTCCTCAATTAATGTTTAG

Protein sequence

MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQGANDEDHMGFNIGDDVIQLPSFGEDDNHDSSINV
Homology
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BLAST of CsaV3_1G017300 vs. NCBI nr
Match: XP_004139619.1 (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus] >KGN65069.1 hypothetical protein Csa_1G191680 [Cucumis sativus])

HSP 1 Score: 409.5 bits (1051), Expect = 7.2e-111
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0 

Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
           TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180
           LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG
Sbjct: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180

Query: 181 ANDEDHMGFNIGDDVIQLPSFGEDDNH 208
           ANDEDHMGFNIGDDVIQLPSFGEDDNH
Sbjct: 181 ANDEDHMGFNIGDDVIQLPSFGEDDNH 207

[Close]
BLAST of CsaV3_1G017300 vs. NCBI nr
Match: XP_008458956.1 (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo])

HSP 1 Score: 391.7 bits (1005), Expect = 1.6e-105
Identity = 201/208 (96.63%), Postives = 202/208 (97.12%), Query Frame = 0 

Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
           TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITR+MFQS
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRLMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNR-SSRVATNEPSWFMEMVNQ 180
           LVAGATPP DLNVIDLNDLGWLVDQKMADIGKRME LTVNR SS VATNEPSWFMEMVNQ
Sbjct: 121 LVAGATPPPDLNVIDLNDLGWLVDQKMADIGKRMESLTVNRSSSHVATNEPSWFMEMVNQ 180

Query: 181 GANDEDHMGFNIGDDVIQLPSFGEDDNH 208
           G NDEDHMGFNIGDDVIQLPSFGE DNH
Sbjct: 181 GGNDEDHMGFNIGDDVIQLPSFGEYDNH 208

[Close]
BLAST of CsaV3_1G017300 vs. NCBI nr
Match: XP_022931807.1 (agamous-like MADS-box protein AGL80 [Cucurbita moschata])

HSP 1 Score: 307.0 bits (785), Expect = 5.1e-80
Identity = 162/210 (77.14%), Postives = 177/210 (84.29%), Query Frame = 0 

Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKL +ITNDA+RKATFKKRKKG LKKL ELTTLCGI+ACAIIF+P NS PDLWPS
Sbjct: 1   MTRKKVKLTFITNDAARKATFKKRKKGFLKKLTELTTLCGIDACAIIFSPFNSYPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
            +G+Q+V+S FK+LPEMEQCKKMVNQETFLR RIAKAADQLKKLQRENREKEI  VMFQS
Sbjct: 61  LVGVQRVISHFKALPEMEQCKKMVNQETFLRHRIAKAADQLKKLQRENREKEIAHVMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELL------TVNRSSRVATNEPSWFM 180
           LVAG  P   LNVIDLNDLGWLVDQKMADI KR+ELL        N+   VAT EPSWF+
Sbjct: 121 LVAGGAPRPSLNVIDLNDLGWLVDQKMADICKRIELLRSAVAVEENQPPCVATVEPSWFI 180

Query: 181 EMVNQGANDEDHMGFNIGDDVIQLPSFGED 205
           EMVNQ  +D+  M FNIGDDVIQLP+FGED
Sbjct: 181 EMVNQECDDQ--MRFNIGDDVIQLPTFGED 208

[Close]
BLAST of CsaV3_1G017300 vs. NCBI nr
Match: XP_023520234.1 (agamous-like MADS-box protein AGL80 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.4 bits (781), Expect = 1.5e-79
Identity = 160/209 (76.56%), Postives = 178/209 (85.17%), Query Frame = 0 

Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKL YITNDA+RKATFKKRKKGL+KKL ELTTLCGIEACAIIF+P NSQPDLWPS
Sbjct: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
            +GL++VL+KFKSL EMEQC KMVNQETFLRDRIAKA DQLKKLQRENREKEITR+MF+S
Sbjct: 61  IVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSR--VATNEPSWFMEMVN 180
           LVAGATPP DLN+IDL DL WLVD+ M D+ KR+ELLT   +    V+  EPSWFMEM++
Sbjct: 121 LVAGATPPRDLNIIDLYDLVWLVDETMTDVCKRIELLTTTMTEPPVVSAVEPSWFMEMMS 180

Query: 181 QGANDEDHMGFNIGDDVIQLPSFGEDDNH 208
            GA D D MGF I DDVIQLP+   DDNH
Sbjct: 181 HGAYD-DQMGFKIWDDVIQLPN---DDNH 205

[Close]
BLAST of CsaV3_1G017300 vs. NCBI nr
Match: XP_022927107.1 (agamous-like MADS-box protein AGL80 [Cucurbita moschata])

HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78
Identity = 158/209 (75.60%), Postives = 176/209 (84.21%), Query Frame = 0 

Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKL YITNDA+RKATFKKRKKGL+KKL ELTTLCGIEACAIIF+P NSQPDLWPS
Sbjct: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
            +GL++VL+KFKSL EMEQC KMVNQETFLRDRIAKA DQLKKLQRENREKEITR+MF+S
Sbjct: 61  VVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATN--EPSWFMEMVN 180
           LVAGATPP DLN+IDL DL W VD+ M D+ KR+ELLT   +     +  EPSWFMEM++
Sbjct: 121 LVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELLTTTMTEPPVGSAVEPSWFMEMMS 180

Query: 181 QGANDEDHMGFNIGDDVIQLPSFGEDDNH 208
            GA D D MGF I DDVIQLP+   DDNH
Sbjct: 181 HGAYD-DQMGFKIWDDVIQLPN---DDNH 205

[Close]
BLAST of CsaV3_1G017300 vs. TAIR10
Match: AT5G48670.1 (AGAMOUS-like 80)

HSP 1 Score: 192.6 bits (488), Expect = 2.5e-49
Identity = 96/171 (56.14%), Postives = 137/171 (80.12%), Query Frame = 0 

Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYI+ND+SRKATFKKRKKGL+KK+ EL+TLCGI ACAII++P ++ P++WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
             G+Q+V+S+F++LPEM+Q KKMV+QE FL+ RIAKA + L++ ++++RE E+T VMFQ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELL-----TVNRSSRVA 167
           L+ G      LN++DLNDLG++++Q + D+ +R+E+L      +  SS VA
Sbjct: 121 LI-GNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILRNSGTEIGESSSVA 170

[Close]
BLAST of CsaV3_1G017300 vs. TAIR10
Match: AT5G26630.1 (MADS-box transcription factor family protein)

HSP 1 Score: 147.9 bits (372), Expect = 7.1e-36
Identity = 76/171 (44.44%), Postives = 116/171 (67.84%), Query Frame = 0 

Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTR+KVK+ +I N+ +RK+TFKKRKKGLLKK  EL  LCG+   A++ +P    P++WPS
Sbjct: 1   MTRQKVKMTFIENETARKSTFKKRKKGLLKKAQELGILCGVPIFAVVNSPYELNPEVWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
                +V+S++K++  M++ KKMVNQETFL+ RI KA +  KKL++EN+E E+  +MF  
Sbjct: 61  REAANQVVSQWKTMSVMDKTKKMVNQETFLQQRITKATESWKKLRKENKELEMKNIMFDC 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPS 172
           L +G T    +   +L D G++++Q++ D+ +R+E+L  N       NEPS
Sbjct: 121 L-SGKTLVSSIEKTELRDFGYVIEQQLKDVNRRIEILKRN-------NEPS 163

[Close]
BLAST of CsaV3_1G017300 vs. TAIR10
Match: AT1G65300.1 (AGAMOUS-like 38)

HSP 1 Score: 145.6 bits (366), Expect = 3.5e-35
Identity = 76/161 (47.20%), Postives = 109/161 (67.70%), Query Frame = 0 

Query: 3   RKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTL 62
           ++K+KL+ I N  SRK TF KRKKG+ KKL EL TLCG+EACA++++P NS P+ WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLV 122
           G++ V+SKF  L  +++ KKMV+QETF+  RIAK  +QL+KL+ EN   +I  +MF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCL- 121

Query: 123 AGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSS 164
            G T   +L+  DL DL   +D+ +  + +R+E+L  N  S
Sbjct: 122 KGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGES 161

[Close]
BLAST of CsaV3_1G017300 vs. TAIR10
Match: AT1G65330.1 (MADS-box transcription factor family protein)

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-32
Identity = 76/168 (45.24%), Postives = 110/168 (65.48%), Query Frame = 0 

Query: 3   RKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTL 62
           R K+KL++I ND+ RK TF KRKKG+LKK  EL TLCG++ACA+I +P NS  + WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLV 122
           G+++V+SKF     +++ KKMV+QETFLR RIAK  ++L+KL+ ENR  +I  +MF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCL- 121

Query: 123 AGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEP 171
            G      L+  DL DL   +++ +  + +R+E+L  N  S  +   P
Sbjct: 122 KGEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESSSSVPPP 168

[Close]
BLAST of CsaV3_1G017300 vs. TAIR10
Match: AT3G05860.1 (MADS-box transcription factor family protein)

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-31
Identity = 69/150 (46.00%), Postives = 102/150 (68.00%), Query Frame = 0 

Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKK+ L+YITN++ RKATF KRKKGL+KK+ EL+ LCGIEACA+I++P NS P++WPS
Sbjct: 1   MTRKKLNLSYITNESMRKATFNKRKKGLVKKIHELSVLCGIEACAVIYSPFNSNPEVWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
              ++ V+  F+ L ++EQ KKMV+ E F+R  I+K  +   K   +N E+ +   MFQ 
Sbjct: 61  NSEVKNVMENFEMLTKLEQEKKMVSHEGFIRQNISKTMESNNKKMIDNAERTMKEAMFQ- 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADI 151
           L++G    L+L   +  DL   +DQ + ++
Sbjct: 121 LLSGKGEKLNLTDRNREDLCKYIDQYLKEL 149

[Close]
BLAST of CsaV3_1G017300 vs. Swiss-Prot
Match: sp|Q9FJK3|AGL80_ARATH (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.5e-48
Identity = 96/171 (56.14%), Postives = 137/171 (80.12%), Query Frame = 0 

Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYI+ND+SRKATFKKRKKGL+KK+ EL+TLCGI ACAII++P ++ P++WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
             G+Q+V+S+F++LPEM+Q KKMV+QE FL+ RIAKA + L++ ++++RE E+T VMFQ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELL-----TVNRSSRVA 167
           L+ G      LN++DLNDLG++++Q + D+ +R+E+L      +  SS VA
Sbjct: 121 LI-GNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILRNSGTEIGESSSVA 170

[Close]
BLAST of CsaV3_1G017300 vs. Swiss-Prot
Match: sp|Q7XJK8|PHE2_ARATH (MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana OX=3702 GN=PHE2 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.4e-34
Identity = 76/161 (47.20%), Postives = 109/161 (67.70%), Query Frame = 0 

Query: 3   RKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTL 62
           ++K+KL+ I N  SRK TF KRKKG+ KKL EL TLCG+EACA++++P NS P+ WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLV 122
           G++ V+SKF  L  +++ KKMV+QETF+  RIAK  +QL+KL+ EN   +I  +MF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCL- 121

Query: 123 AGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSS 164
            G T   +L+  DL DL   +D+ +  + +R+E+L  N  S
Sbjct: 122 KGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGES 161

[Close]
BLAST of CsaV3_1G017300 vs. Swiss-Prot
Match: sp|O80805|PHE1_ARATH (MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana OX=3702 GN=PHE1 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.0e-31
Identity = 76/168 (45.24%), Postives = 110/168 (65.48%), Query Frame = 0 

Query: 3   RKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTL 62
           R K+KL++I ND+ RK TF KRKKG+LKK  EL TLCG++ACA+I +P NS  + WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLV 122
           G+++V+SKF     +++ KKMV+QETFLR RIAK  ++L+KL+ ENR  +I  +MF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCL- 121

Query: 123 AGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEP 171
            G      L+  DL DL   +++ +  + +R+E+L  N  S  +   P
Sbjct: 122 KGEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESSSSVPPP 168

[Close]
BLAST of CsaV3_1G017300 vs. Swiss-Prot
Match: sp|Q7XJK6|AGL36_ARATH (Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana OX=3702 GN=AGL36 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.3e-30
Identity = 72/167 (43.11%), Postives = 104/167 (62.28%), Query Frame = 0 

Query: 4   KKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTLG 63
           KKVKL+ I N+ SRK +F KRK G+ KKL EL+TLCG++ACA+I++P    P+ WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  LQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLVA 123
            +KV S+F  +P   + KKM++QET+L +RI KA +QLK L  ENRE ++ R MF   V 
Sbjct: 62  AKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMF-DCVE 121

Query: 124 GATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEP 171
           G       +  DL DL   ++  +  +  R+E +  N  S +++  P
Sbjct: 122 GKMSQYHYDAKDLQDLQSCINLYLDQLNGRIESIKENGESLLSSVSP 167

[Close]
BLAST of CsaV3_1G017300 vs. Swiss-Prot
Match: sp|Q7XJK5|AGL90_ARATH (Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana OX=3702 GN=AGL90 PE=1 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 2.8e-29
Identity = 72/167 (43.11%), Postives = 103/167 (61.68%), Query Frame = 0 

Query: 4   KKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTLG 63
           KKVKL+ I N+ SRK +F KRK G+ KKL EL+TLCG++ACA+I++P    P+ WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  LQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLVA 123
            +KV SKF  +P   + +KM++QET L +RI KA +QLK L  ENRE ++ R MF   V 
Sbjct: 62  AKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMF-DCVE 121

Query: 124 GATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEP 171
           G       +  DL DL   ++  +  +  R+E +  N  S +++  P
Sbjct: 122 GKMSQYRYDAKDLQDLLSCMNLYLDQLNGRIESIKENGESLLSSVSP 167

[Close]
BLAST of CsaV3_1G017300 vs. TrEMBL
Match: tr|A0A0A0LVU5|A0A0A0LVU5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G191680 PE=4 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 4.8e-111
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0 

Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
           TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180
           LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG
Sbjct: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180

Query: 181 ANDEDHMGFNIGDDVIQLPSFGEDDNH 208
           ANDEDHMGFNIGDDVIQLPSFGEDDNH
Sbjct: 181 ANDEDHMGFNIGDDVIQLPSFGEDDNH 207

[Close]
BLAST of CsaV3_1G017300 vs. TrEMBL
Match: tr|A0A1S3C968|A0A1S3C968_CUCME (agamous-like MADS-box protein AGL80 OS=Cucumis melo OX=3656 GN=LOC103498216 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.0e-105
Identity = 201/208 (96.63%), Postives = 202/208 (97.12%), Query Frame = 0 

Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
           TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITR+MFQS
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRLMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNR-SSRVATNEPSWFMEMVNQ 180
           LVAGATPP DLNVIDLNDLGWLVDQKMADIGKRME LTVNR SS VATNEPSWFMEMVNQ
Sbjct: 121 LVAGATPPPDLNVIDLNDLGWLVDQKMADIGKRMESLTVNRSSSHVATNEPSWFMEMVNQ 180

Query: 181 GANDEDHMGFNIGDDVIQLPSFGEDDNH 208
           G NDEDHMGFNIGDDVIQLPSFGE DNH
Sbjct: 181 GGNDEDHMGFNIGDDVIQLPSFGEYDNH 208

[Close]
BLAST of CsaV3_1G017300 vs. TrEMBL
Match: tr|W9R845|W9R845_9ROSA (Agamous-like MADS-box protein AGL80 OS=Morus notabilis OX=981085 GN=L484_022655 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.7e-58
Identity = 120/235 (51.06%), Postives = 167/235 (71.06%), Query Frame = 0 

Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYITND++RKATFKKRKKGL+KK+ EL+TLC I+AC II++P ++QP+++PS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLIKKITELSTLCDIDACVIIYSPYDAQPEVYPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
            LGLQ+VL++FK +PEMEQ KKMVNQE FLR RIAKA +QLKK +++NREKEITR+MFQS
Sbjct: 61  PLGLQQVLARFKKMPEMEQSKKMVNQECFLRQRIAKANEQLKKQRKDNREKEITRLMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRME---------------LLTVNRSSRV 180
           L  GA     L+++DLNDLGWL++Q + +I ++ME               +L ++ + + 
Sbjct: 121 L-TGAKGLQGLSILDLNDLGWLIEQNLKEINRKMERIGGRQMHESKPRPGILAMHAAEKK 180

Query: 181 ATNE--------------PSWFMEMVNQGANDEDHMGFNIGDDVIQLPSFGEDDN 207
           A ++              P WFM+++NQ    + H+GF  G + + LP FG+ +N
Sbjct: 181 ARSDVEAEIRAPPGFEAKPQWFMDLMNQAHEQQQHVGFGAGGEELMLPHFGDQNN 234

[Close]
BLAST of CsaV3_1G017300 vs. TrEMBL
Match: tr|A0A1S3BPF2|A0A1S3BPF2_CUCME (agamous-like MADS-box protein AGL80 OS=Cucumis melo OX=3656 GN=LOC103492094 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.0e-57
Identity = 127/223 (56.95%), Postives = 168/223 (75.34%), Query Frame = 0 

Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYI ND++RKAT+KKRK+GL+KK++EL+TLCGIEACAIIF+P +SQP+LWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
            +G+Q+VLS+FK +PEMEQ KKMVNQETFLR RIAKA +QLKK++++NREKEITR+MFQS
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELL---------TVNRSSRVATNEP- 180
           L A A     LN++DLNDLGWL+DQ + DI  R++ L                  T +P 
Sbjct: 121 LTA-AKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKKPSLPQXXXXXXXXXXXTTQPQ 180

Query: 181 --SWFMEMVNQGANDEDHMGFNIGDDVIQLPSFGEDDNHDSSI 212
             +W ME+V    + +D MGF +GDD++ LP   +  NH++++
Sbjct: 181 TAAWLMELV----SPQDQMGF-VGDDML-LPFGDQTYNHNNAM 216

[Close]
BLAST of CsaV3_1G017300 vs. TrEMBL
Match: tr|A0A0A0LVS3|A0A0A0LVS3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560740 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 125/225 (55.56%), Postives = 166/225 (73.78%), Query Frame = 0 

Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYI ND++RKAT+KKRK+GL+KK++EL+TLCGIEACAIIF+P +SQP+LWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
            +G+Q+VLS+FK +PEMEQ KKMVNQETFLR RIAKA +QLKK++++NREKEITR+MFQS
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTV--------------NRSSRVA 180
           L A A     LN++DLNDLGWL+DQ + DI  R++ L +                     
Sbjct: 121 LTA-AKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 TNEPSWFMEMVNQGANDEDHMGFNIGDDVIQLPSFGEDDNHDSSI 212
               +W ME+V    + +D MGF +GDD++ LP   +  NH++++
Sbjct: 181 PQTAAWLMELV----SPQDQMGF-VGDDML-LPFGDQTYNHNNAM 218

The following BLAST results are available for this feature:
BLAST of CsaV3_1G017300 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139619.17.2e-111100.00PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus] >KGN65069.1 hyp... [more]
XP_008458956.11.6e-10596.63PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo][more]
XP_022931807.15.1e-8077.14agamous-like MADS-box protein AGL80 [Cucurbita moschata][more]
XP_023520234.11.5e-7976.56agamous-like MADS-box protein AGL80 [Cucurbita pepo subsp. pepo][more]
XP_022927107.11.2e-7875.60agamous-like MADS-box protein AGL80 [Cucurbita moschata][more]
BLAST of CsaV3_1G017300 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48670.12.5e-4956.14AGAMOUS-like 80[more]
AT5G26630.17.1e-3644.44MADS-box transcription factor family protein[more]
AT1G65300.13.5e-3547.20AGAMOUS-like 38[more]
AT1G65330.11.6e-3245.24MADS-box transcription factor family protein[more]
AT3G05860.11.8e-3146.00MADS-box transcription factor family protein[more]
BLAST of CsaV3_1G017300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FJK3|AGL80_ARATH4.5e-4856.14Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=... [more]
sp|Q7XJK8|PHE2_ARATH6.4e-3447.20MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana OX=3702 GN=PHE2 P... [more]
sp|O80805|PHE1_ARATH3.0e-3145.24MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana OX=3702 GN=PHE1 P... [more]
sp|Q7XJK6|AGL36_ARATH7.3e-3043.11Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana OX=3702 GN=AGL36 PE=... [more]
sp|Q7XJK5|AGL90_ARATH2.8e-2943.11Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana OX=3702 GN=AGL90 PE=... [more]
BLAST of CsaV3_1G017300 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVU5|A0A0A0LVU5_CUCSA4.8e-111100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G191680 PE=4 SV=1[more]
tr|A0A1S3C968|A0A1S3C968_CUCME1.0e-10596.63agamous-like MADS-box protein AGL80 OS=Cucumis melo OX=3656 GN=LOC103498216 PE=4... [more]
tr|W9R845|W9R845_9ROSA4.7e-5851.06Agamous-like MADS-box protein AGL80 OS=Morus notabilis OX=981085 GN=L484_022655 ... [more]
tr|A0A1S3BPF2|A0A1S3BPF2_CUCME4.0e-5756.95agamous-like MADS-box protein AGL80 OS=Cucumis melo OX=3656 GN=LOC103492094 PE=4... [more]
tr|A0A0A0LVS3|A0A0A0LVS3_CUCSA1.2e-5655.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560740 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000982transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0000987core promoter proximal region sequence-specific DNA binding
GO:0046983protein dimerization activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0045944positive regulation of transcription from RNA polymerase II promoter
Vocabulary: INTERPRO
TermDefinition
IPR033897MADS_SRF-like
IPR036879TF_MADSbox_sf
IPR002100TF_MADSbox
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000987 core promoter proximal region sequence-specific DNA binding
molecular_function GO:0000982 transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G017300.1CsaV3_1G017300.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 87..114
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 1..167
NoneNo IPR availablePANTHERPTHR11945:SF355AGAMOUS-LIKE MADS-BOX PROTEIN AGL36-RELATEDcoord: 1..167
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 23..38
score: 60.12
coord: 3..23
score: 40.11
coord: 38..59
score: 24.94
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 7.7E-24
score: 95.2
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 11..52
e-value: 3.4E-17
score: 61.6
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..52
score: 17.605
IPR036879Transcription factor, MADS-box superfamilyGENE3DG3DSA:3.40.1810.10coord: 13..96
e-value: 1.1E-13
score: 53.0
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILYSSF55455SRF-likecoord: 2..95
IPR033897MADS SRF-likeCDDcd00266MADS_SRF_likecoord: 2..85
e-value: 9.12191E-21
score: 82.3079

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G017300CSPI01G16080Wild cucumber (PI 183967)cpicucB001
CsaV3_1G017300Cp4.1LG09g06630Cucurbita pepo (Zucchini)cpecucB0021
CsaV3_1G017300CsGy1G015720Cucumber (Gy14) v2cgybcucB002
CsaV3_1G017300MELO3C021692Melon (DHL92) v3.5.1cucmeB017
CsaV3_1G017300Lsi02G010970Bottle gourd (USVL1VR-Ls)cuclsiB033
CsaV3_1G017300MELO3C021692.2Melon (DHL92) v3.6.1cucmedB014
CsaV3_1G017300Bhi08G000684Wax gourdcucwgoB063
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G017300Silver-seed gourdcarcucB1083
CsaV3_1G017300Cucurbita maxima (Rimu)cmacucB0241
CsaV3_1G017300Cucurbita moschata (Rifu)cmocucB0228
CsaV3_1G017300Cucurbita pepo (Zucchini)cpecucB0640
CsaV3_1G017300Watermelon (Charleston Gray)cucwcgB024
CsaV3_1G017300Watermelon (97103) v1cucwmB057
CsaV3_1G017300Watermelon (97103) v2cucwmbB008
CsaV3_1G017300Wax gourdcucwgoB039