CsaV3_1G017300.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G017300.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	agamous-like MADS-box protein AGL80
Location	chr1 : 11853581 .. 11854313 (+)
Sequence length	642

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCAGTTGCATGCGATGACAAGAAAGAAGGTGAAACTTGCATACATTACAAATGATGCATCAAGAAAAGCCACATTCAAGAAAAGGAAAAAGGGTTTACTGAAGAAGCTGGCTGAGCTTACCACTCTATGTGGCATTGAGGCATGTGCTATAATCTTCAATCCCTCCAATTCACAACCTGACCTTTGGCCCTCCACTCTAGGCCTCCAAAAGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAATGTAAGAAGATGGTCAACCAAGAGACCTTCCTTCGTGATCGTATTGCAAAGGCTGCTGACCAACTCAAGAAGCTACAAAGGGAGAATCGTGAGAAGGAGATCACTCGAGTCATGTTTCAAAGCCTCGTTGCTGGAGCAACTCCGCCGCTAGATCTCAATGTCATCGATTTGAATGACCTTGGTTGGTTGGTTGATCAAAAGATGGCTGATATTGGTAAGAGAATGGAGTTGCTTACAGTAAATCGATCGTCACGTGTGGCGACAAATGAGCCGTCGTGGTTTATGGAGATGGTGAATCAAGGAGCTAATGATGAAGATCATATGGGATTCAATATTGGAGATGATGTGATTCAACTTCCTAGCTTTGGGGAGGATGATAATCATGGTACTTTTTGGTCAAATAATAATGTCATTTTCCCTTGAAAGGTTTGGGATGGTTTGTCATTAATTTCTCAAACTAGATTCCTCAATTAATGTTTAG

mRNA sequence

ATGACAAGAAAGAAGGTGAAACTTGCATACATTACAAATGATGCATCAAGAAAAGCCACATTCAAGAAAAGGAAAAAGGGTTTACTGAAGAAGCTGGCTGAGCTTACCACTCTATGTGGCATTGAGGCATGTGCTATAATCTTCAATCCCTCCAATTCACAACCTGACCTTTGGCCCTCCACTCTAGGCCTCCAAAAGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAATGTAAGAAGATGGTCAACCAAGAGACCTTCCTTCGTGATCGTATTGCAAAGGCTGCTGACCAACTCAAGAAGCTACAAAGGGAGAATCGTGAGAAGGAGATCACTCGAGTCATGTTTCAAAGCCTCGTTGCTGGAGCAACTCCGCCGCTAGATCTCAATGTCATCGATTTGAATGACCTTGGTTGGTTGGTTGATCAAAAGATGGCTGATATTGGTAAGAGAATGGAGTTGCTTACAGTAAATCGATCGTCACGTGTGGCGACAAATGAGCCGTCGTGGTTTATGGAGATGGTGAATCAAGGAGCTAATGATGAAGATCATATGGGATTCAATATTGGAGATGATGTGATTCAACTTCCTAGCTTTGGGGAGGATGATAATCATGATTCCTCAATTAATGTTTAG

Coding sequence (CDS)

ATGACAAGAAAGAAGGTGAAACTTGCATACATTACAAATGATGCATCAAGAAAAGCCACATTCAAGAAAAGGAAAAAGGGTTTACTGAAGAAGCTGGCTGAGCTTACCACTCTATGTGGCATTGAGGCATGTGCTATAATCTTCAATCCCTCCAATTCACAACCTGACCTTTGGCCCTCCACTCTAGGCCTCCAAAAGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAATGTAAGAAGATGGTCAACCAAGAGACCTTCCTTCGTGATCGTATTGCAAAGGCTGCTGACCAACTCAAGAAGCTACAAAGGGAGAATCGTGAGAAGGAGATCACTCGAGTCATGTTTCAAAGCCTCGTTGCTGGAGCAACTCCGCCGCTAGATCTCAATGTCATCGATTTGAATGACCTTGGTTGGTTGGTTGATCAAAAGATGGCTGATATTGGTAAGAGAATGGAGTTGCTTACAGTAAATCGATCGTCACGTGTGGCGACAAATGAGCCGTCGTGGTTTATGGAGATGGTGAATCAAGGAGCTAATGATGAAGATCATATGGGATTCAATATTGGAGATGATGTGATTCAACTTCCTAGCTTTGGGGAGGATGATAATCATGATTCCTCAATTAATGTTTAG

Protein sequence

MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQGANDEDHMGFNIGDDVIQLPSFGEDDNHDSSINV

Homology

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BLAST of CsaV3_1G017300.1 vs. NCBI nr
Match: XP_004139619.1 (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus] >KGN65069.1 hypothetical protein Csa_1G191680 [Cucumis sativus])

HSP 1 Score: 409.5 bits (1051), Expect = 7.2e-111
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
           TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180
           LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG
Sbjct: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180

Query: 181 ANDEDHMGFNIGDDVIQLPSFGEDDNH 208
           ANDEDHMGFNIGDDVIQLPSFGEDDNH
Sbjct: 181 ANDEDHMGFNIGDDVIQLPSFGEDDNH 207

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BLAST of CsaV3_1G017300.1 vs. NCBI nr
Match: XP_008458956.1 (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo])

HSP 1 Score: 391.7 bits (1005), Expect = 1.6e-105
Identity = 201/208 (96.63%), Postives = 202/208 (97.12%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
           TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITR+MFQS
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRLMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNR-SSRVATNEPSWFMEMVNQ 180
           LVAGATPP DLNVIDLNDLGWLVDQKMADIGKRME LTVNR SS VATNEPSWFMEMVNQ
Sbjct: 121 LVAGATPPPDLNVIDLNDLGWLVDQKMADIGKRMESLTVNRSSSHVATNEPSWFMEMVNQ 180

Query: 181 GANDEDHMGFNIGDDVIQLPSFGEDDNH 208
           G NDEDHMGFNIGDDVIQLPSFGE DNH
Sbjct: 181 GGNDEDHMGFNIGDDVIQLPSFGEYDNH 208

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BLAST of CsaV3_1G017300.1 vs. NCBI nr
Match: XP_022931807.1 (agamous-like MADS-box protein AGL80 [Cucurbita moschata])

HSP 1 Score: 307.0 bits (785), Expect = 5.1e-80
Identity = 162/210 (77.14%), Postives = 177/210 (84.29%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKL +ITNDA+RKATFKKRKKG LKKL ELTTLCGI+ACAIIF+P NS PDLWPS
Sbjct: 1   MTRKKVKLTFITNDAARKATFKKRKKGFLKKLTELTTLCGIDACAIIFSPFNSYPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
            +G+Q+V+S FK+LPEMEQCKKMVNQETFLR RIAKAADQLKKLQRENREKEI  VMFQS
Sbjct: 61  LVGVQRVISHFKALPEMEQCKKMVNQETFLRHRIAKAADQLKKLQRENREKEIAHVMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELL------TVNRSSRVATNEPSWFM 180
           LVAG  P   LNVIDLNDLGWLVDQKMADI KR+ELL        N+   VAT EPSWF+
Sbjct: 121 LVAGGAPRPSLNVIDLNDLGWLVDQKMADICKRIELLRSAVAVEENQPPCVATVEPSWFI 180

Query: 181 EMVNQGANDEDHMGFNIGDDVIQLPSFGED 205
           EMVNQ  +D+  M FNIGDDVIQLP+FGED
Sbjct: 181 EMVNQECDDQ--MRFNIGDDVIQLPTFGED 208

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BLAST of CsaV3_1G017300.1 vs. NCBI nr
Match: XP_023520234.1 (agamous-like MADS-box protein AGL80 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.4 bits (781), Expect = 1.5e-79
Identity = 160/209 (76.56%), Postives = 178/209 (85.17%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKL YITNDA+RKATFKKRKKGL+KKL ELTTLCGIEACAIIF+P NSQPDLWPS
Sbjct: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
            +GL++VL+KFKSL EMEQC KMVNQETFLRDRIAKA DQLKKLQRENREKEITR+MF+S
Sbjct: 61  IVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSR--VATNEPSWFMEMVN 180
           LVAGATPP DLN+IDL DL WLVD+ M D+ KR+ELLT   +    V+  EPSWFMEM++
Sbjct: 121 LVAGATPPRDLNIIDLYDLVWLVDETMTDVCKRIELLTTTMTEPPVVSAVEPSWFMEMMS 180

Query: 181 QGANDEDHMGFNIGDDVIQLPSFGEDDNH 208
            GA D D MGF I DDVIQLP+   DDNH
Sbjct: 181 HGAYD-DQMGFKIWDDVIQLPN---DDNH 205

[Close]

BLAST of CsaV3_1G017300.1 vs. NCBI nr
Match: XP_022927107.1 (agamous-like MADS-box protein AGL80 [Cucurbita moschata])

HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78
Identity = 158/209 (75.60%), Postives = 176/209 (84.21%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKL YITNDA+RKATFKKRKKGL+KKL ELTTLCGIEACAIIF+P NSQPDLWPS
Sbjct: 1   MTRKKVKLTYITNDAARKATFKKRKKGLMKKLTELTTLCGIEACAIIFSPFNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
            +GL++VL+KFKSL EMEQC KMVNQETFLRDRIAKA DQLKKLQRENREKEITR+MF+S
Sbjct: 61  VVGLERVLAKFKSLSEMEQCNKMVNQETFLRDRIAKATDQLKKLQRENREKEITRLMFES 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATN--EPSWFMEMVN 180
           LVAGATPP DLN+IDL DL W VD+ M D+ KR+ELLT   +     +  EPSWFMEM++
Sbjct: 121 LVAGATPPRDLNIIDLYDLVWFVDETMTDVCKRIELLTTTMTEPPVGSAVEPSWFMEMMS 180

Query: 181 QGANDEDHMGFNIGDDVIQLPSFGEDDNH 208
            GA D D MGF I DDVIQLP+   DDNH
Sbjct: 181 HGAYD-DQMGFKIWDDVIQLPN---DDNH 205

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BLAST of CsaV3_1G017300.1 vs. TAIR10
Match: AT5G48670.1 (AGAMOUS-like 80)

HSP 1 Score: 192.6 bits (488), Expect = 2.5e-49
Identity = 96/171 (56.14%), Postives = 137/171 (80.12%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYI+ND+SRKATFKKRKKGL+KK+ EL+TLCGI ACAII++P ++ P++WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
             G+Q+V+S+F++LPEM+Q KKMV+QE FL+ RIAKA + L++ ++++RE E+T VMFQ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELL-----TVNRSSRVA 167
           L+ G      LN++DLNDLG++++Q + D+ +R+E+L      +  SS VA
Sbjct: 121 LI-GNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILRNSGTEIGESSSVA 170

[Close]

BLAST of CsaV3_1G017300.1 vs. TAIR10
Match: AT5G26630.1 (MADS-box transcription factor family protein)

HSP 1 Score: 147.9 bits (372), Expect = 7.1e-36
Identity = 76/171 (44.44%), Postives = 116/171 (67.84%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTR+KVK+ +I N+ +RK+TFKKRKKGLLKK  EL  LCG+   A++ +P    P++WPS
Sbjct: 1   MTRQKVKMTFIENETARKSTFKKRKKGLLKKAQELGILCGVPIFAVVNSPYELNPEVWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
                +V+S++K++  M++ KKMVNQETFL+ RI KA +  KKL++EN+E E+  +MF  
Sbjct: 61  REAANQVVSQWKTMSVMDKTKKMVNQETFLQQRITKATESWKKLRKENKELEMKNIMFDC 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPS 172
           L +G T    +   +L D G++++Q++ D+ +R+E+L  N       NEPS
Sbjct: 121 L-SGKTLVSSIEKTELRDFGYVIEQQLKDVNRRIEILKRN-------NEPS 163

[Close]

BLAST of CsaV3_1G017300.1 vs. TAIR10
Match: AT1G65300.1 (AGAMOUS-like 38)

HSP 1 Score: 145.6 bits (366), Expect = 3.5e-35
Identity = 76/161 (47.20%), Postives = 109/161 (67.70%), Query Frame = 0


Query: 3   RKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTL 62
           ++K+KL+ I N  SRK TF KRKKG+ KKL EL TLCG+EACA++++P NS P+ WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLV 122
           G++ V+SKF  L  +++ KKMV+QETF+  RIAK  +QL+KL+ EN   +I  +MF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCL- 121

Query: 123 AGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSS 164
            G T   +L+  DL DL   +D+ +  + +R+E+L  N  S
Sbjct: 122 KGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGES 161

[Close]

BLAST of CsaV3_1G017300.1 vs. TAIR10
Match: AT1G65330.1 (MADS-box transcription factor family protein)

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-32
Identity = 76/168 (45.24%), Postives = 110/168 (65.48%), Query Frame = 0


Query: 3   RKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTL 62
           R K+KL++I ND+ RK TF KRKKG+LKK  EL TLCG++ACA+I +P NS  + WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLV 122
           G+++V+SKF     +++ KKMV+QETFLR RIAK  ++L+KL+ ENR  +I  +MF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCL- 121

Query: 123 AGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEP 171
            G      L+  DL DL   +++ +  + +R+E+L  N  S  +   P
Sbjct: 122 KGEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESSSSVPPP 168

[Close]

BLAST of CsaV3_1G017300.1 vs. TAIR10
Match: AT3G05860.1 (MADS-box transcription factor family protein)

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-31
Identity = 69/150 (46.00%), Postives = 102/150 (68.00%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKK+ L+YITN++ RKATF KRKKGL+KK+ EL+ LCGIEACA+I++P NS P++WPS
Sbjct: 1   MTRKKLNLSYITNESMRKATFNKRKKGLVKKIHELSVLCGIEACAVIYSPFNSNPEVWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
              ++ V+  F+ L ++EQ KKMV+ E F+R  I+K  +   K   +N E+ +   MFQ 
Sbjct: 61  NSEVKNVMENFEMLTKLEQEKKMVSHEGFIRQNISKTMESNNKKMIDNAERTMKEAMFQ- 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADI 151
           L++G    L+L   +  DL   +DQ + ++
Sbjct: 121 LLSGKGEKLNLTDRNREDLCKYIDQYLKEL 149

[Close]

BLAST of CsaV3_1G017300.1 vs. Swiss-Prot
Match: sp|Q9FJK3|AGL80_ARATH (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.5e-48
Identity = 96/171 (56.14%), Postives = 137/171 (80.12%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYI+ND+SRKATFKKRKKGL+KK+ EL+TLCGI ACAII++P ++ P++WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
             G+Q+V+S+F++LPEM+Q KKMV+QE FL+ RIAKA + L++ ++++RE E+T VMFQ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELL-----TVNRSSRVA 167
           L+ G      LN++DLNDLG++++Q + D+ +R+E+L      +  SS VA
Sbjct: 121 LI-GNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILRNSGTEIGESSSVA 170

[Close]

BLAST of CsaV3_1G017300.1 vs. Swiss-Prot
Match: sp|Q7XJK8|PHE2_ARATH (MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana OX=3702 GN=PHE2 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.4e-34
Identity = 76/161 (47.20%), Postives = 109/161 (67.70%), Query Frame = 0


Query: 3   RKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTL 62
           ++K+KL+ I N  SRK TF KRKKG+ KKL EL TLCG+EACA++++P NS P+ WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLV 122
           G++ V+SKF  L  +++ KKMV+QETF+  RIAK  +QL+KL+ EN   +I  +MF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCL- 121

Query: 123 AGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSS 164
            G T   +L+  DL DL   +D+ +  + +R+E+L  N  S
Sbjct: 122 KGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGES 161

[Close]

BLAST of CsaV3_1G017300.1 vs. Swiss-Prot
Match: sp|O80805|PHE1_ARATH (MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana OX=3702 GN=PHE1 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.0e-31
Identity = 76/168 (45.24%), Postives = 110/168 (65.48%), Query Frame = 0


Query: 3   RKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTL 62
           R K+KL++I ND+ RK TF KRKKG+LKK  EL TLCG++ACA+I +P NS  + WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLV 122
           G+++V+SKF     +++ KKMV+QETFLR RIAK  ++L+KL+ ENR  +I  +MF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCL- 121

Query: 123 AGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEP 171
            G      L+  DL DL   +++ +  + +R+E+L  N  S  +   P
Sbjct: 122 KGEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESSSSVPPP 168

[Close]

BLAST of CsaV3_1G017300.1 vs. Swiss-Prot
Match: sp|Q7XJK6|AGL36_ARATH (Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana OX=3702 GN=AGL36 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.3e-30
Identity = 72/167 (43.11%), Postives = 104/167 (62.28%), Query Frame = 0


Query: 4   KKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTLG 63
           KKVKL+ I N+ SRK +F KRK G+ KKL EL+TLCG++ACA+I++P    P+ WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  LQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLVA 123
            +KV S+F  +P   + KKM++QET+L +RI KA +QLK L  ENRE ++ R MF   V 
Sbjct: 62  AKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMF-DCVE 121

Query: 124 GATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEP 171
           G       +  DL DL   ++  +  +  R+E +  N  S +++  P
Sbjct: 122 GKMSQYHYDAKDLQDLQSCINLYLDQLNGRIESIKENGESLLSSVSP 167

[Close]

BLAST of CsaV3_1G017300.1 vs. Swiss-Prot
Match: sp|Q7XJK5|AGL90_ARATH (Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana OX=3702 GN=AGL90 PE=1 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 2.8e-29
Identity = 72/167 (43.11%), Postives = 103/167 (61.68%), Query Frame = 0


Query: 4   KKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTLG 63
           KKVKL+ I N+ SRK +F KRK G+ KKL EL+TLCG++ACA+I++P    P+ WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  LQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQSLVA 123
            +KV SKF  +P   + +KM++QET L +RI KA +QLK L  ENRE ++ R MF   V 
Sbjct: 62  AKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMF-DCVE 121

Query: 124 GATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEP 171
           G       +  DL DL   ++  +  +  R+E +  N  S +++  P
Sbjct: 122 GKMSQYRYDAKDLQDLLSCMNLYLDQLNGRIESIKENGESLLSSVSP 167

[Close]

BLAST of CsaV3_1G017300.1 vs. TrEMBL
Match: tr|A0A0A0LVU5|A0A0A0LVU5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G191680 PE=4 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 4.8e-111
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
           TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180
           LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG
Sbjct: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNRSSRVATNEPSWFMEMVNQG 180

Query: 181 ANDEDHMGFNIGDDVIQLPSFGEDDNH 208
           ANDEDHMGFNIGDDVIQLPSFGEDDNH
Sbjct: 181 ANDEDHMGFNIGDDVIQLPSFGEDDNH 207

[Close]

BLAST of CsaV3_1G017300.1 vs. TrEMBL
Match: tr|A0A1S3C968|A0A1S3C968_CUCME (agamous-like MADS-box protein AGL80 OS=Cucumis melo OX=3656 GN=LOC103498216 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.0e-105
Identity = 201/208 (96.63%), Postives = 202/208 (97.12%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS
Sbjct: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
           TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITR+MFQS
Sbjct: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRLMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTVNR-SSRVATNEPSWFMEMVNQ 180
           LVAGATPP DLNVIDLNDLGWLVDQKMADIGKRME LTVNR SS VATNEPSWFMEMVNQ
Sbjct: 121 LVAGATPPPDLNVIDLNDLGWLVDQKMADIGKRMESLTVNRSSSHVATNEPSWFMEMVNQ 180

Query: 181 GANDEDHMGFNIGDDVIQLPSFGEDDNH 208
           G NDEDHMGFNIGDDVIQLPSFGE DNH
Sbjct: 181 GGNDEDHMGFNIGDDVIQLPSFGEYDNH 208

[Close]

BLAST of CsaV3_1G017300.1 vs. TrEMBL
Match: tr|W9R845|W9R845_9ROSA (Agamous-like MADS-box protein AGL80 OS=Morus notabilis OX=981085 GN=L484_022655 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.7e-58
Identity = 120/235 (51.06%), Postives = 167/235 (71.06%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYITND++RKATFKKRKKGL+KK+ EL+TLC I+AC II++P ++QP+++PS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLIKKITELSTLCDIDACVIIYSPYDAQPEVYPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
            LGLQ+VL++FK +PEMEQ KKMVNQE FLR RIAKA +QLKK +++NREKEITR+MFQS
Sbjct: 61  PLGLQQVLARFKKMPEMEQSKKMVNQECFLRQRIAKANEQLKKQRKDNREKEITRLMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRME---------------LLTVNRSSRV 180
           L  GA     L+++DLNDLGWL++Q + +I ++ME               +L ++ + + 
Sbjct: 121 L-TGAKGLQGLSILDLNDLGWLIEQNLKEINRKMERIGGRQMHESKPRPGILAMHAAEKK 180

Query: 181 ATNE--------------PSWFMEMVNQGANDEDHMGFNIGDDVIQLPSFGEDDN 207
           A ++              P WFM+++NQ    + H+GF  G + + LP FG+ +N
Sbjct: 181 ARSDVEAEIRAPPGFEAKPQWFMDLMNQAHEQQQHVGFGAGGEELMLPHFGDQNN 234

[Close]

BLAST of CsaV3_1G017300.1 vs. TrEMBL
Match: tr|A0A1S3BPF2|A0A1S3BPF2_CUCME (agamous-like MADS-box protein AGL80 OS=Cucumis melo OX=3656 GN=LOC103492094 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.0e-57
Identity = 127/223 (56.95%), Postives = 168/223 (75.34%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYI ND++RKAT+KKRK+GL+KK++EL+TLCGIEACAIIF+P +SQP+LWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
            +G+Q+VLS+FK +PEMEQ KKMVNQETFLR RIAKA +QLKK++++NREKEITR+MFQS
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELL---------TVNRSSRVATNEP- 180
           L A A     LN++DLNDLGWL+DQ + DI  R++ L                  T +P 
Sbjct: 121 LTA-AKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKKPSLPQXXXXXXXXXXXTTQPQ 180

Query: 181 --SWFMEMVNQGANDEDHMGFNIGDDVIQLPSFGEDDNHDSSI 212
             +W ME+V    + +D MGF +GDD++ LP   +  NH++++
Sbjct: 181 TAAWLMELV----SPQDQMGF-VGDDML-LPFGDQTYNHNNAM 216

[Close]

BLAST of CsaV3_1G017300.1 vs. TrEMBL
Match: tr|A0A0A0LVS3|A0A0A0LVS3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560740 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 125/225 (55.56%), Postives = 166/225 (73.78%), Query Frame = 0


Query: 1   MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPS 60
           MTRKKVKLAYI ND++RKAT+KKRK+GL+KK++EL+TLCGIEACAIIF+P +SQP+LWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  TLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRVMFQS 120
            +G+Q+VLS+FK +PEMEQ KKMVNQETFLR RIAKA +QLKK++++NREKEITR+MFQS
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LVAGATPPLDLNVIDLNDLGWLVDQKMADIGKRMELLTV--------------NRSSRVA 180
           L A A     LN++DLNDLGWL+DQ + DI  R++ L +                     
Sbjct: 121 LTA-AKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 TNEPSWFMEMVNQGANDEDHMGFNIGDDVIQLPSFGEDDNHDSSI 212
               +W ME+V    + +D MGF +GDD++ LP   +  NH++++
Sbjct: 181 PQTAAWLMELV----SPQDQMGF-VGDDML-LPFGDQTYNHNNAM 218

The following BLAST results are available for this feature:

BLAST of CsaV3_1G017300.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139619.1	7.2e-111	100.00	PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus] >KGN65069.1 hyp...	[more]
XP_008458956.1	1.6e-105	96.63	PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo]	[more]
XP_022931807.1	5.1e-80	77.14	agamous-like MADS-box protein AGL80 [Cucurbita moschata]	[more]
XP_023520234.1	1.5e-79	76.56	agamous-like MADS-box protein AGL80 [Cucurbita pepo subsp. pepo]	[more]
XP_022927107.1	1.2e-78	75.60	agamous-like MADS-box protein AGL80 [Cucurbita moschata]	[more]

BLAST of CsaV3_1G017300.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48670.1	2.5e-49	56.14	AGAMOUS-like 80	[more]
AT5G26630.1	7.1e-36	44.44	MADS-box transcription factor family protein	[more]
AT1G65300.1	3.5e-35	47.20	AGAMOUS-like 38	[more]
AT1G65330.1	1.6e-32	45.24	MADS-box transcription factor family protein	[more]
AT3G05860.1	1.8e-31	46.00	MADS-box transcription factor family protein	[more]

BLAST of CsaV3_1G017300.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FJK3\|AGL80_ARATH	4.5e-48	56.14	Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=...	[more]
sp\|Q7XJK8\|PHE2_ARATH	6.4e-34	47.20	MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana OX=3702 GN=PHE2 P...	[more]
sp\|O80805\|PHE1_ARATH	3.0e-31	45.24	MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana OX=3702 GN=PHE1 P...	[more]
sp\|Q7XJK6\|AGL36_ARATH	7.3e-30	43.11	Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana OX=3702 GN=AGL36 PE=...	[more]
sp\|Q7XJK5\|AGL90_ARATH	2.8e-29	43.11	Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana OX=3702 GN=AGL90 PE=...	[more]

BLAST of CsaV3_1G017300.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LVU5\|A0A0A0LVU5_CUCSA	4.8e-111	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G191680 PE=4 SV=1	[more]
tr\|A0A1S3C968\|A0A1S3C968_CUCME	1.0e-105	96.63	agamous-like MADS-box protein AGL80 OS=Cucumis melo OX=3656 GN=LOC103498216 PE=4...	[more]
tr\|W9R845\|W9R845_9ROSA	4.7e-58	51.06	Agamous-like MADS-box protein AGL80 OS=Morus notabilis OX=981085 GN=L484_022655 ...	[more]
tr\|A0A1S3BPF2\|A0A1S3BPF2_CUCME	4.0e-57	56.95	agamous-like MADS-box protein AGL80 OS=Cucumis melo OX=3656 GN=LOC103492094 PE=4...	[more]
tr\|A0A0A0LVS3\|A0A0A0LVS3_CUCSA	1.2e-56	55.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560740 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000982	transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0000987	core promoter proximal region sequence-specific DNA binding
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0045944	positive regulation of transcription from RNA polymerase II promoter

Vocabulary: **INTERPRO**
Term	Definition
IPR033897	MADS_SRF-like
IPR036879	TF_MADSbox_sf
IPR002100	TF_MADSbox

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000987	core promoter proximal region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000982	transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_1G017300	CsaV3_1G017300	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G017300.1.exon1	CsaV3_1G017300.1.exon1	exon
CsaV3_1G017300.1.exon2	CsaV3_1G017300.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G017300.1.cds1	CsaV3_1G017300.1.cds1	CDS
CsaV3_1G017300.1.cds2	CsaV3_1G017300.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G017300.1	CsaV3_1G017300.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 87..114
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 1..167
None	No IPR available	PANTHER	PTHR11945:SF355	AGAMOUS-LIKE MADS-BOX PROTEIN AGL36-RELATED	coord: 1..167
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 60.12 coord: 3..23 score: 40.11 coord: 38..59 score: 24.94
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 7.7E-24 score: 95.2
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..52 e-value: 3.4E-17 score: 61.6
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..52 score: 17.605
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	G3DSA:3.40.1810.10		coord: 13..96 e-value: 1.1E-13 score: 53.0
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	SSF55455	SRF-like	coord: 2..95
IPR033897	MADS SRF-like	CDD	cd00266	MADS_SRF_like	coord: 2..85 e-value: 9.12191E-21 score: 82.3079