CsaV3_1G017250 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G017250
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 11786799 .. 11789437 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGGATAATGTATGGTATAAAAAGAGGAATTTAATTGTGAATCATGGAAGCCCCATCCTCATGTTATTGATCTGCCCAAACAAACAACTCAAAAGAAAAAAAGATATCATATACTCAATCTCCTTTCATTTTTATAAACTTTATAAACTTTATAATATATAGTTTTTTAACCCATTAATAATTGATAAAGGCAAAACATTTACAACTGGACAAAGACTGATGTCCTTGCACTTGTGGCACTCAATTGAGGTGTCCTATTTTGCATAAGATTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTAAATTATATTTTTCCATTCTTCACTCTCTCATATCTACTCTATATATACCCTTTCTCACATTCTTATTTTCTTCATCATCTCTATATCTCTTTAATTTCCTAATTCCTAATTTCTTCTGAATTCACATCCTCTCCAATGGCCACTGAGGTAACCCTTTTCTTTCTCTCTCTCTCTTCAAAAATCACTACATCAATTTTTGCTTTAAACAACTAAAACGTAATCAGATCGTCGATCGCAAGCTTAATTTCCACTACCACGGGGTCCTGTTATGTTAACACATCTAATTCATCTGAGGCTTCATGGAGTACTCACAATTTTTCATATCATAACCATAACCTTGACTTTAAGTTTTATGCTTTATTTTTTCCTAATATTGGAAATTATTTCTTTTAATGTTCTTCTTCTTCTTTATTATTATTATTATTTTGGGATAATTTGCCATCTTCTTTCTCTTCATGGCACATGCAAGTCAAGAATTCCAATTTTTTTTCCTTTAGAAAATGAGATGAGGTTCATTCACATATTTGACAATCATGATAAATATTGTCATTGTTATGTTAGTTGAGTTATGTTGATATTGATCATACACTGCAACGCATCTGATTTTGTAGGTTGAATCAGCTGCATCATTGCCAGAAACGGTGGAGGTGGTGAAGGTTGAGAAAAAATCCTCTGAAGAACAGCCGGTCATCGAGGCAGATCCAGAGGTTGAGCCAGCCAACTTAGAAGAACCCAAACCTGAAGCTCTAGAGCCAGATCAGGTAGAGTTAATAAGAAATGAAAAGGAATAAAGCCTAAAAGTTTCTTTGATAAAAGTTATAGGATTGAAAAAGAGATTATAGTGATATGAAAAGTGAGAGTAAGTAGAAAATAATTTGGTTCTTCTAAGTAAAATTATGTACGTAATGGTTTCATCCCTGCAGGTAGAGGAATCCACGGAGGCTCCTGTAGAGGAATCCAAAGTTGAAGAGGGTCAAGAAAAGAAGGAAGAAACAGTAGTGGCAACTGAATCAGAAGAAAAAGAAGAAGCGGTGCCCGAAGCCGAAGAAAGTGCAAAGGTTGAGGAGTCTCCAGCAGCCGAGGTCGAGGCGGAGGCCAAACCTCAGGTGGAAGAAGAGAAAGCAATTGAAGAAGAGAAACCGACTGAGGTAGCAGAAGAGAAGAGCCAAGAATAGAGATCACATGAAAAGAGTTACTATGGAAGAGTGGTGGGGTGCAATATTAATTTATGATCTCAGCTTTGTGGGACAACTAGTTTAATTTAATTATGTGCTGTTTTTTTCCTATTTCTAAAATAGAAACTTGATTTTCTATTGGTTTATTGAGTGAAAATATTTGAATTATATTATGAAAGTTAATGATGTATTATGGAGTATAGTTGAAGGATTTGAACTACTATATATATGGGAGGTGAAGAAGATGTTTGATCTCAACTTAGAATTTGATAAATATTGGTGTGTGAAGAGTGCTCTACCTCAAGTTTTTCTAGTGGAATTTATGCAGTTTATTATTTGTTTTCTATGTACTAATTATTAGGATTTCTAAAGTTAAAATATTGTAACATTGGAATGAGAGAAAATTTATTGGATATTGAAAAATGAATTGTTCTCAAGTATTGTGACAACAAAATAACATGTATGGGAAGATGACCTTGAGATGTGATCAAGTACACCGAGTGTGCTAAATGAATTATTTTATGGTTACTAAACTTCTATTCTTTAGGAAGGAAGAGGAAGACATATTATATGTAAGAGATCGGCACTCCTCTTTAGGGATTTAAGTGGGTGTGTTAGATAAGGACCACATTAACTCATCTCTTCTAAGCAAGAAATATGAGACCGATCATGTACTCCCTCAAGAGATGTTTAAGAAGAATAAAAAAGAAGGTAAATATGATTTACTTGTCTTAGAAACATGTTTAGTGAAAAATAACCAAAATGCTTGGATAATTGATTCAAGAGCCATTAACCATGTTTTCTCTTCTTTATAGGAAACTAGTTCCTTTAAGCGGCTCAAGGAGGATGAGATGACACTCAAGGTTGAAACGAAAGATGTCATTCCAGCTCGTGCAGTGAGAGATGCTAAGTTGTCTTTCAAAAATATATTCATGTTTTTAGAAAACTCGTATATAGTTCCTAAGATTAAAAGAAATCTTATATCTATTTCTTATCTTATTGAACAATCATATAATGTAACATTTTCTTTAAATGAAGCATTCAATTCTAAGAATGGTGTACATATTTGGTCAGCTAAACTTGAAGACAACTTGTATGTATTAAGATCTAACGAAGCGAAAG

mRNA sequence

ATGGCCACTGAGGTTGAATCAGCTGCATCATTGCCAGAAACGGTGGAGGTGGTGAAGGTTGAGAAAAAATCCTCTGAAGAACAGCCGGTCATCGAGGCAGATCCAGAGGTTGAGCCAGCCAACTTAGAAGAACCCAAACCTGAAGCTCTAGAGCCAGATCAGGTAGAGGAATCCACGGAGGCTCCTGTAGAGGAATCCAAAGTTGAAGAGGGTCAAGAAAAGAAGGAAGAAACAGTAGTGGCAACTGAATCAGAAGAAAAAGAAGAAGCGGTGCCCGAAGCCGAAGAAAGTGCAAAGGTTGAGGAGTCTCCAGCAGCCGAGGTCGAGGCGGAGGCCAAACCTCAGGTGGAAGAAGAGAAAGCAATTGAAGAAGAGAAACCGACTGAGGTAGCAGAAGAGAAGAGCCAAGAATAG

Coding sequence (CDS)

ATGGCCACTGAGGTTGAATCAGCTGCATCATTGCCAGAAACGGTGGAGGTGGTGAAGGTTGAGAAAAAATCCTCTGAAGAACAGCCGGTCATCGAGGCAGATCCAGAGGTTGAGCCAGCCAACTTAGAAGAACCCAAACCTGAAGCTCTAGAGCCAGATCAGGTAGAGGAATCCACGGAGGCTCCTGTAGAGGAATCCAAAGTTGAAGAGGGTCAAGAAAAGAAGGAAGAAACAGTAGTGGCAACTGAATCAGAAGAAAAAGAAGAAGCGGTGCCCGAAGCCGAAGAAAGTGCAAAGGTTGAGGAGTCTCCAGCAGCCGAGGTCGAGGCGGAGGCCAAACCTCAGGTGGAAGAAGAGAAAGCAATTGAAGAAGAGAAACCGACTGAGGTAGCAGAAGAGAAGAGCCAAGAATAG

Protein sequence

MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPEALEPDQVEESTEAPVEESKVEEGQEKKEETVVATESEEKEEAVPEAEESAKVEESPAAEVEAEAKPQVEEEKAIEEEKPTEVAEEKSQE
Homology
[Close]
BLAST of CsaV3_1G017250 vs. NCBI nr
Match: XP_004139547.1 (PREDICTED: protein TsetseEP-like [Cucumis sativus] >KGN65063.1 hypothetical protein Csa_1G187170 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0 

Query: 1  MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPE 49
          MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPE
Sbjct: 1  MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPE 48

[Close]
BLAST of CsaV3_1G017250 vs. TrEMBL
Match: tr|A0A0A0LTG9|A0A0A0LTG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G187170 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.8e-14
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0 

Query: 1  MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPE 49
          MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPE
Sbjct: 1  MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPE 48

The following BLAST results are available for this feature:
BLAST of CsaV3_1G017250 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139547.11.2e-13100.00PREDICTED: protein TsetseEP-like [Cucumis sativus] >KGN65063.1 hypothetical prot... [more]
BLAST of CsaV3_1G017250 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G017250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G017250 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LTG9|A0A0A0LTG9_CUCSA7.8e-14100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G187170 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G017250.1CsaV3_1G017250.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..137

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G017250CSPI01G16030Wild cucumber (PI 183967)cpicucB001
CsaV3_1G017250Cucsa.002270Cucumber (Gy14) v1cgycucB000
CsaV3_1G017250CsGy1G015660Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G017250Silver-seed gourdcarcucB1083
CsaV3_1G017250Cucurbita maxima (Rimu)cmacucB0241
CsaV3_1G017250Cucurbita moschata (Rifu)cmocucB0228
CsaV3_1G017250Cucurbita pepo (Zucchini)cpecucB0021
CsaV3_1G017250Cucurbita pepo (Zucchini)cpecucB0640
CsaV3_1G017250Bottle gourd (USVL1VR-Ls)cuclsiB033
CsaV3_1G017250Melon (DHL92) v3.5.1cucmeB017
CsaV3_1G017250Melon (DHL92) v3.6.1cucmedB014
CsaV3_1G017250Watermelon (Charleston Gray)cucwcgB024
CsaV3_1G017250Watermelon (97103) v1cucwmB057
CsaV3_1G017250Watermelon (97103) v2cucwmbB008
CsaV3_1G017250Wax gourdcucwgoB039
CsaV3_1G017250Wax gourdcucwgoB063