CsGy1G015660 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G015660
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 11592282 .. 11594642 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACTGGACAAAGACTGATGTCCTTGCACTTGTGGCACTCAATTGAGGTGTCCTATTTTGCATAAGATTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTAAATTATATTTTTCCATTCTTCACTCTCTCATATCTACTCTATATATACCCTTTCTCACATTCTTATTTTCTTCATCATCTCTATATCTCTTTAATTTCCTAATTCCTAATTTCTTCTGAATTCACATCCTCTCCAATGGCCACTGAGGTAACCCTTTTCTTTCTCTCTCTCTCTTCAAAAATCACTACATCAATTTTTGCTTTAAACAACTAAAACGTAATCAGATCGTCGATCGCAAGCTTAATTTCCACTACCACGGGGTCCTGTTATGTTAACACATCTAATTCATCTGAGGCTTCATGGAGTACTCACAATTTTTCATATCATAACCATAACCTTGACTTTAAGTTTTATGCTTTATTTTTTCCTAATATTGGAAATTATTTCTTTTAATGTTCTTCTTCTTCTTTATTATTATTATTATTTTGGGATAATTTGCCATCTTCTTTCTCTTCATGGCACATGCAAGTCAAGAATTCCAATTTTTTTTCCTTTAGAAAATGAGATGAGGTTCATTCACATATTTGACAATCATGATAAATATTGTCATTGTTATGTTAGTTGAGTTATGTTGATATTGATCATACACTGCAACGCATCTGATTTTGTAGGTTGAATCAGCTGCATCATTGCCAGAAACGGTGGAGGTGGTGAAGGTTGAGAAAAAATCCTCTGAAGAACAGCCGGTCATCGAGGCAGATCCAGAGGTTGAGCCAGCCAACTTAGAAGAACCCAAACCTGAAGCTCTAGAGCCAGATCAGGTAGAGTTAATAAGAAATGAAAAGGAATAAAGCCTAAAAGTTTCTTTGATAAAAGTTATAGGATTGAAAAAGAGATTATAGTGATATGAAAAGTGAGAGTAAGTAGAAAATAATTTGGTTCTTCTAAGTAAAATTATGTACGTAATGGTTTCATCCCTGCAGGTAGAGGAATCCACGGAGGCTCCTGTAGAGGAATCCAAAGTTGAAGAGGGTCAAGAAAAGAAGGAAGAAACAGTAGTGGCAACTGAATCAGAAGAAAAAGAAGAAGCGGTGCCCGAAGCCGAAGAAAGTGCAAAGGTTGAGGAGTCTCCAGCAGCCGAGGTCGAGGCGGAGGCCAAACCTCAGGTGGAAGAAGAGAAAGCAATTGAAGAAGAGAAACCGACTGAGGTAGCAGAAGAGAAGAGCCAAGAATAGAGATCACATGAAAAGAGTTACTATGGAAGAGTGGTGGGGTGCAATATTAATTTATGATCTCAGCTTTGTGGGACAACTAGTTTAATTTAATTATGTGCTGTTTTTTTCCTATTTCTAAAATAGAAACTTGATTTTCTATTGGTTTATTGAGTGAAAATATTTGAATTATATTATGAAAGTTAATGATGTATTATGGAGTATAGTTGAAGGATTTGAACTACTATATATATGGGAGGTGAAGAAGATGTTTGATCTCAACTTAGAATTTGATAAATATTGGTGTGTGAAGAGTGCTCTACCTCAAGTTTTTCTAGTGGAATTTATGCAGTTTATTATTTGTTTTCTATGTACTAATTATTAGGATTTCTAAAGTTAAAATATTGTAACATTGGAATGAGAGAAAATTTATTGGATATTGAAAAATGAATTGTTCTCAAGTATTGTGACAACAAAATAACATGTATGGGAAGATGACCTTGAGATGTGATCAAGTACACCGAGTGTGCTAAATGAATTATTTTATGGTTACTAAACTTCTATTCTTTAGGAAGGAAGAGGAAGACATATTATATGTAAGAGATCGGCACTCCTCTTTAGGGATTTAAGTGGGTGTGTTAGATAAGGACCACATTAACTCATCTCTTCTAAGCAAGAAATATGAGACCGATCATGTACTCCCTCAAGAGATGTTTAAGAAGAATAAAAAAGAAGGTAAATATGATTTACTTGTCTTAGAAACATGTTTAGTGAAAAATAACCAAAATGCTTGGATAATTGATTCAAGAGCCACTAACCATGTTTTCTCTTCTTTATAGGAAACTAGTTCCTTTAAGCGGCTCAAGGAGGATGAGATGACACTCAAGGTTGAAACGAAAGATGTCATTCCAGCTCGTGCAGTGAGAGATGCTAAGTTGTCTTTCAAAAATATATTCATGTTTTTAGAAAACTCGTATATAGTTCCTAAGATTAAAAGAAATCTTATATCTATTTCTTATCTTATTGAACAATCATATAATGTAACATTTTCTTTAAATGAAGCATTCAAT

mRNA sequence

CAACTGGACAAAGACTGATGTCCTTGCACTTGTGGCACTCAATTGAGGTGTCCTATTTTGCATAAGATTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTAAATTATATTTTTCCATTCTTCACTCTCTCATATCTACTCTATATATACCCTTTCTCACATTCTTATTTTCTTCATCATCTCTATATCTCTTTAATTTCCTAATTCCTAATTTCTTCTGAATTCACATCCTCTCCAATGGCCACTGAGGTTGAATCAGCTGCATCATTGCCAGAAACGGTGGAGGTGGTGAAGGTTGAGAAAAAATCCTCTGAAGAACAGCCGGTCATCGAGGCAGATCCAGAGGTTGAGCCAGCCAACTTAGAAGAACCCAAACCTGAAGCTCTAGAGCCAGATCAGGTAGAGGAATCCACGGAGGCTCCTGTAGAGGAATCCAAAGTTGAAGAGGGTCAAGAAAAGAAGGAAGAAACAGTAGTGGCAACTGAATCAGAAGAAAAAGAAGAAGCGGTGCCCGAAGCCGAAGAAAGTGCAAAGGTTGAGGAGTCTCCAGCAGCCGAGGTCGAGGCGGAGGCCAAACCTCAGGTGGAAGAAGAGAAAGCAATTGAAGAAGAGAAACCGACTGAGGTAGCAGAAGAGAAGAGCCAAGAATAGAGATCACATGAAAAGAGTTACTATGGAAGAGTGGTGGGGTGCAATATTAATTTATGATCTCAGCTTTGTGGGACAACTAGTTTAATTTAATTATGTGCTGTTTTTTTCCTATTTCTAAAATAGAAACTTGATTTTCTATTGGTTTATTGAGTGAAAATATTTGAATTATATTATGAAAGTTAATGATGTATTATGGAGTATAGTTGAAGGATTTGAACTACTATATATATGGGAGGTGAAGAAGATGTTTGATCTCAACTTAGAATTTGATAAATATTGGTGTGTGAAGAGTGCTCTACCTCAAGTTTTTCTAGTGGAATTTATGCAGTTTATTATTTGTTTTCTATGTACTAATTATTAGGATTTCTAAAGTTAAAATATTGTAACATTGGAATGAGAGAAAATTTATTGGATATTGAAAAATGAATTGTTCTCAAGTATTGTGACAACAAAATAACATGTATGGGAAGATGACCTTGAGATGTGATCAAGTACACCGAGTGTGCTAAATGAATTATTTTATGGTTACTAAACTTCTATTCTTTAGGAAGGAAGAGGAAGACATATTATATGTAAGAGATCGGCACTCCTCTTTAGGGATTTAAGTGGGTGTGTTAGATAAGGACCACATTAACTCATCTCTTCTAAGCAAGAAATATGAGACCGATCATGTACTCCCTCAAGAGATGTTTAAGAAGAATAAAAAAGAAGGAAACTAGTTCCTTTAAGCGGCTCAAGGAGGATGAGATGACACTCAAGGTTGAAACGAAAGATGTCATTCCAGCTCGTGCAGTGAGAGATGCTAAGTTGTCTTTCAAAAATATATTCATGTTTTTAGAAAACTCGTATATAGTTCCTAAGATTAAAAGAAATCTTATATCTATTTCTTATCTTATTGAACAATCATATAATGTAACATTTTCTTTAAATGAAGCATTCAAT

Coding sequence (CDS)

ATGGCCACTGAGGTTGAATCAGCTGCATCATTGCCAGAAACGGTGGAGGTGGTGAAGGTTGAGAAAAAATCCTCTGAAGAACAGCCGGTCATCGAGGCAGATCCAGAGGTTGAGCCAGCCAACTTAGAAGAACCCAAACCTGAAGCTCTAGAGCCAGATCAGGTAGAGGAATCCACGGAGGCTCCTGTAGAGGAATCCAAAGTTGAAGAGGGTCAAGAAAAGAAGGAAGAAACAGTAGTGGCAACTGAATCAGAAGAAAAAGAAGAAGCGGTGCCCGAAGCCGAAGAAAGTGCAAAGGTTGAGGAGTCTCCAGCAGCCGAGGTCGAGGCGGAGGCCAAACCTCAGGTGGAAGAAGAGAAAGCAATTGAAGAAGAGAAACCGACTGAGGTAGCAGAAGAGAAGAGCCAAGAATAG

Protein sequence

MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPEALEPDQVEESTEAPVEESKVEEGQEKKEETVVATESEEKEEAVPEAEESAKVEESPAAEVEAEAKPQVEEEKAIEEEKPTEVAEEKSQE

Homology

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BLAST of CsGy1G015660 vs. NCBI nr
Match: XP_004139547.1 (PREDICTED: protein TsetseEP-like [Cucumis sativus] >KGN65063.1 hypothetical protein Csa_1G187170 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPE 49
          MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPE
Sbjct: 1  MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPE 48

[Close]

BLAST of CsGy1G015660 vs. TrEMBL
Match: tr|A0A0A0LTG9|A0A0A0LTG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G187170 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.8e-14
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPE 49
          MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPE
Sbjct: 1  MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPE 48

The following BLAST results are available for this feature:

BLAST of CsGy1G015660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139547.1	1.2e-13	100.00	PREDICTED: protein TsetseEP-like [Cucumis sativus] >KGN65063.1 hypothetical prot...	[more]

BLAST of CsGy1G015660 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G015660 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G015660 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTG9\|A0A0A0LTG9_CUCSA	7.8e-14	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G187170 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G015660.1	CsGy1G015660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..30

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G015660	Csa1G187170	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G015660	CSPI01G16030	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G015660	CsaV3_1G017250	Cucumber (Chinese Long) v3	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G015660	Wax gourd	cgybwgoB032
CsGy1G015660	Wax gourd	cgybwgoB042
CsGy1G015660	Wax gourd	cgybwgoB056
CsGy1G015660	Cucumber (Gy14) v2	cgybcgybB036
CsGy1G015660	Cucurbita maxima (Rimu)	cgybcmaB068
CsGy1G015660	Cucurbita maxima (Rimu)	cgybcmaB095
CsGy1G015660	Cucurbita maxima (Rimu)	cgybcmaB128
CsGy1G015660	Cucurbita moschata (Rifu)	cgybcmoB065
CsGy1G015660	Cucurbita moschata (Rifu)	cgybcmoB084
CsGy1G015660	Cucurbita moschata (Rifu)	cgybcmoB118
CsGy1G015660	Cucurbita pepo (Zucchini)	cgybcpeB007
CsGy1G015660	Cucurbita pepo (Zucchini)	cgybcpeB024
CsGy1G015660	Cucurbita pepo (Zucchini)	cgybcpeB087
CsGy1G015660	Cucumber (Chinese Long) v2	cgybcuB041
CsGy1G015660	Bottle gourd (USVL1VR-Ls)	cgyblsiB016
CsGy1G015660	Bottle gourd (USVL1VR-Ls)	cgyblsiB029
CsGy1G015660	Melon (DHL92) v3.5.1	cgybmeB017
CsGy1G015660	Melon (DHL92) v3.6.1	cgybmedB014
CsGy1G015660	Watermelon (97103) v1	cgybwmB051
CsGy1G015660	Watermelon (Charleston Gray)	cgybwcgB018
CsGy1G015660	Watermelon (Charleston Gray)	cgybwcgB021
CsGy1G015660	Watermelon (97103) v1	cgybwmB048
CsGy1G015660	Wild cucumber (PI 183967)	cgybcpiB038
CsGy1G015660	Silver-seed gourd	carcgybB0408
CsGy1G015660	Silver-seed gourd	carcgybB1020
CsGy1G015660	Cucumber (Chinese Long) v3	cgybcucB046
CsGy1G015660	Watermelon (97103) v2	cgybwmbB006
CsGy1G015660	Watermelon (97103) v2	cgybwmbB009