CsGy1G015660.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy1G015660.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 11592282 .. 11594642 (-)
Sequence length1631
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACTGGACAAAGACTGATGTCCTTGCACTTGTGGCACTCAATTGAGGTGTCCTATTTTGCATAAGATTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTAAATTATATTTTTCCATTCTTCACTCTCTCATATCTACTCTATATATACCCTTTCTCACATTCTTATTTTCTTCATCATCTCTATATCTCTTTAATTTCCTAATTCCTAATTTCTTCTGAATTCACATCCTCTCCAATGGCCACTGAGGTAACCCTTTTCTTTCTCTCTCTCTCTTCAAAAATCACTACATCAATTTTTGCTTTAAACAACTAAAACGTAATCAGATCGTCGATCGCAAGCTTAATTTCCACTACCACGGGGTCCTGTTATGTTAACACATCTAATTCATCTGAGGCTTCATGGAGTACTCACAATTTTTCATATCATAACCATAACCTTGACTTTAAGTTTTATGCTTTATTTTTTCCTAATATTGGAAATTATTTCTTTTAATGTTCTTCTTCTTCTTTATTATTATTATTATTTTGGGATAATTTGCCATCTTCTTTCTCTTCATGGCACATGCAAGTCAAGAATTCCAATTTTTTTTCCTTTAGAAAATGAGATGAGGTTCATTCACATATTTGACAATCATGATAAATATTGTCATTGTTATGTTAGTTGAGTTATGTTGATATTGATCATACACTGCAACGCATCTGATTTTGTAGGTTGAATCAGCTGCATCATTGCCAGAAACGGTGGAGGTGGTGAAGGTTGAGAAAAAATCCTCTGAAGAACAGCCGGTCATCGAGGCAGATCCAGAGGTTGAGCCAGCCAACTTAGAAGAACCCAAACCTGAAGCTCTAGAGCCAGATCAGGTAGAGTTAATAAGAAATGAAAAGGAATAAAGCCTAAAAGTTTCTTTGATAAAAGTTATAGGATTGAAAAAGAGATTATAGTGATATGAAAAGTGAGAGTAAGTAGAAAATAATTTGGTTCTTCTAAGTAAAATTATGTACGTAATGGTTTCATCCCTGCAGGTAGAGGAATCCACGGAGGCTCCTGTAGAGGAATCCAAAGTTGAAGAGGGTCAAGAAAAGAAGGAAGAAACAGTAGTGGCAACTGAATCAGAAGAAAAAGAAGAAGCGGTGCCCGAAGCCGAAGAAAGTGCAAAGGTTGAGGAGTCTCCAGCAGCCGAGGTCGAGGCGGAGGCCAAACCTCAGGTGGAAGAAGAGAAAGCAATTGAAGAAGAGAAACCGACTGAGGTAGCAGAAGAGAAGAGCCAAGAATAGAGATCACATGAAAAGAGTTACTATGGAAGAGTGGTGGGGTGCAATATTAATTTATGATCTCAGCTTTGTGGGACAACTAGTTTAATTTAATTATGTGCTGTTTTTTTCCTATTTCTAAAATAGAAACTTGATTTTCTATTGGTTTATTGAGTGAAAATATTTGAATTATATTATGAAAGTTAATGATGTATTATGGAGTATAGTTGAAGGATTTGAACTACTATATATATGGGAGGTGAAGAAGATGTTTGATCTCAACTTAGAATTTGATAAATATTGGTGTGTGAAGAGTGCTCTACCTCAAGTTTTTCTAGTGGAATTTATGCAGTTTATTATTTGTTTTCTATGTACTAATTATTAGGATTTCTAAAGTTAAAATATTGTAACATTGGAATGAGAGAAAATTTATTGGATATTGAAAAATGAATTGTTCTCAAGTATTGTGACAACAAAATAACATGTATGGGAAGATGACCTTGAGATGTGATCAAGTACACCGAGTGTGCTAAATGAATTATTTTATGGTTACTAAACTTCTATTCTTTAGGAAGGAAGAGGAAGACATATTATATGTAAGAGATCGGCACTCCTCTTTAGGGATTTAAGTGGGTGTGTTAGATAAGGACCACATTAACTCATCTCTTCTAAGCAAGAAATATGAGACCGATCATGTACTCCCTCAAGAGATGTTTAAGAAGAATAAAAAAGAAGGTAAATATGATTTACTTGTCTTAGAAACATGTTTAGTGAAAAATAACCAAAATGCTTGGATAATTGATTCAAGAGCCACTAACCATGTTTTCTCTTCTTTATAGGAAACTAGTTCCTTTAAGCGGCTCAAGGAGGATGAGATGACACTCAAGGTTGAAACGAAAGATGTCATTCCAGCTCGTGCAGTGAGAGATGCTAAGTTGTCTTTCAAAAATATATTCATGTTTTTAGAAAACTCGTATATAGTTCCTAAGATTAAAAGAAATCTTATATCTATTTCTTATCTTATTGAACAATCATATAATGTAACATTTTCTTTAAATGAAGCATTCAAT

mRNA sequence

CAACTGGACAAAGACTGATGTCCTTGCACTTGTGGCACTCAATTGAGGTGTCCTATTTTGCATAAGATTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTAAATTATATTTTTCCATTCTTCACTCTCTCATATCTACTCTATATATACCCTTTCTCACATTCTTATTTTCTTCATCATCTCTATATCTCTTTAATTTCCTAATTCCTAATTTCTTCTGAATTCACATCCTCTCCAATGGCCACTGAGGTTGAATCAGCTGCATCATTGCCAGAAACGGTGGAGGTGGTGAAGGTTGAGAAAAAATCCTCTGAAGAACAGCCGGTCATCGAGGCAGATCCAGAGGTTGAGCCAGCCAACTTAGAAGAACCCAAACCTGAAGCTCTAGAGCCAGATCAGGTAGAGGAATCCACGGAGGCTCCTGTAGAGGAATCCAAAGTTGAAGAGGGTCAAGAAAAGAAGGAAGAAACAGTAGTGGCAACTGAATCAGAAGAAAAAGAAGAAGCGGTGCCCGAAGCCGAAGAAAGTGCAAAGGTTGAGGAGTCTCCAGCAGCCGAGGTCGAGGCGGAGGCCAAACCTCAGGTGGAAGAAGAGAAAGCAATTGAAGAAGAGAAACCGACTGAGGTAGCAGAAGAGAAGAGCCAAGAATAGAGATCACATGAAAAGAGTTACTATGGAAGAGTGGTGGGGTGCAATATTAATTTATGATCTCAGCTTTGTGGGACAACTAGTTTAATTTAATTATGTGCTGTTTTTTTCCTATTTCTAAAATAGAAACTTGATTTTCTATTGGTTTATTGAGTGAAAATATTTGAATTATATTATGAAAGTTAATGATGTATTATGGAGTATAGTTGAAGGATTTGAACTACTATATATATGGGAGGTGAAGAAGATGTTTGATCTCAACTTAGAATTTGATAAATATTGGTGTGTGAAGAGTGCTCTACCTCAAGTTTTTCTAGTGGAATTTATGCAGTTTATTATTTGTTTTCTATGTACTAATTATTAGGATTTCTAAAGTTAAAATATTGTAACATTGGAATGAGAGAAAATTTATTGGATATTGAAAAATGAATTGTTCTCAAGTATTGTGACAACAAAATAACATGTATGGGAAGATGACCTTGAGATGTGATCAAGTACACCGAGTGTGCTAAATGAATTATTTTATGGTTACTAAACTTCTATTCTTTAGGAAGGAAGAGGAAGACATATTATATGTAAGAGATCGGCACTCCTCTTTAGGGATTTAAGTGGGTGTGTTAGATAAGGACCACATTAACTCATCTCTTCTAAGCAAGAAATATGAGACCGATCATGTACTCCCTCAAGAGATGTTTAAGAAGAATAAAAAAGAAGGAAACTAGTTCCTTTAAGCGGCTCAAGGAGGATGAGATGACACTCAAGGTTGAAACGAAAGATGTCATTCCAGCTCGTGCAGTGAGAGATGCTAAGTTGTCTTTCAAAAATATATTCATGTTTTTAGAAAACTCGTATATAGTTCCTAAGATTAAAAGAAATCTTATATCTATTTCTTATCTTATTGAACAATCATATAATGTAACATTTTCTTTAAATGAAGCATTCAAT

Coding sequence (CDS)

ATGGCCACTGAGGTTGAATCAGCTGCATCATTGCCAGAAACGGTGGAGGTGGTGAAGGTTGAGAAAAAATCCTCTGAAGAACAGCCGGTCATCGAGGCAGATCCAGAGGTTGAGCCAGCCAACTTAGAAGAACCCAAACCTGAAGCTCTAGAGCCAGATCAGGTAGAGGAATCCACGGAGGCTCCTGTAGAGGAATCCAAAGTTGAAGAGGGTCAAGAAAAGAAGGAAGAAACAGTAGTGGCAACTGAATCAGAAGAAAAAGAAGAAGCGGTGCCCGAAGCCGAAGAAAGTGCAAAGGTTGAGGAGTCTCCAGCAGCCGAGGTCGAGGCGGAGGCCAAACCTCAGGTGGAAGAAGAGAAAGCAATTGAAGAAGAGAAACCGACTGAGGTAGCAGAAGAGAAGAGCCAAGAATAG

Protein sequence

MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPEALEPDQVEESTEAPVEESKVEEGQEKKEETVVATESEEKEEAVPEAEESAKVEESPAAEVEAEAKPQVEEEKAIEEEKPTEVAEEKSQE
Homology
[Close]
BLAST of CsGy1G015660.1 vs. NCBI nr
Match: XP_004139547.1 (PREDICTED: protein TsetseEP-like [Cucumis sativus] >KGN65063.1 hypothetical protein Csa_1G187170 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0 

Query: 1  MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPE 49
          MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPE
Sbjct: 1  MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPE 48

[Close]
BLAST of CsGy1G015660.1 vs. TrEMBL
Match: tr|A0A0A0LTG9|A0A0A0LTG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G187170 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.8e-14
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0 

Query: 1  MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPE 49
          MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPE
Sbjct: 1  MATEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPE 48

The following BLAST results are available for this feature:
BLAST of CsGy1G015660.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139547.11.2e-13100.00PREDICTED: protein TsetseEP-like [Cucumis sativus] >KGN65063.1 hypothetical prot... [more]
BLAST of CsGy1G015660.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G015660.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G015660.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LTG9|A0A0A0LTG9_CUCSA7.8e-14100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G187170 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy1G015660CsGy1G015660gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy1G015660.1CsGy1G015660.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G015660.1.five_prime_UTR.1CsGy1G015660.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G015660.1.exon.4CsGy1G015660.1.exon.4exon
CsGy1G015660.1.exon.3CsGy1G015660.1.exon.3exon
CsGy1G015660.1.exon.2CsGy1G015660.1.exon.2exon
CsGy1G015660.1.exon.1CsGy1G015660.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G015660.1.CDS.3CsGy1G015660.1.CDS.3CDS
CsGy1G015660.1.CDS.2CsGy1G015660.1.CDS.2CDS
CsGy1G015660.1.CDS.1CsGy1G015660.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G015660.1.three_prime_UTR.2CsGy1G015660.1.three_prime_UTR.2three_prime_UTR
CsGy1G015660.1.three_prime_UTR.1CsGy1G015660.1.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..30