CsaV3_1G015490 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G015490
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat-containing protein
Location	chr1 : 11050065 .. 11052179 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTCCAGCTCTGCTATTCGCCGCCCACCTTCTTTACCGAACACCATTTCCTTTCCAATTCTCTCACTCCTCAACGTAAAACAACTCTGTCCAACTCCTCTCCTCTTTTCAAGCTCAGTCCCATTCCTCGTCACTCAAAACCGTTCCTCCAAATTACCAATGTCTCGCTACAGGAACACGCTCCTCAAGATACCCAAAATACAATTCCCTCTGCTGATGAAATCTCCAAATACCCAGATTCGAAATCCGGTTCCTCCTCGAACAGCTCCGTTTGGGTCAATCCTAGAAGCCCCAGAGCTTCCAAACTTCGGAAGCAGTCGTACGAAGCAAGATATGCTTCTCTTATTAGAGTATCGGAGTCTTTAGACTCTTCTAATCCATGTGAGGTAGATGTTGCTGATGTCTTGAAGGTGATAGGTAATAACATTTTAGAACGGGACGCTATTTTAGTGCTGAATAACATGTCAAATTCCCAAACTGCGTTGCTTGCTCTTCGCTACTTCCAGGATATGCTGAAATCAAGTAAACAGACAATTTTTTATAACGTGACACTGAAGGTGTTTAGGAAGTGCAGAGATATGGAGGGTGCAGAGAAACTGTTCGAAGAAATGATTAACAGAGGAGTTAAGCCTGATAATGTGACATTTTCTACAATTATTAGTTGTGCTAGGTTGTGTTCTTTACCAAGTAAGGCTGTTGAGTGGTTTGAGAAGATGCCAAGTTTTGACTGTAATCCTGATGATGTTACTTACTCTACGATGATTGATGCCTATGGACGTGCTGGTAATGTTGACATGGCTTTCAGTTTGTATGACCGTGCAAGAACGGAAAACTGGCGAATTGATCCTGCGACATTCTCGACAATGATCAAAATTCATGGAGTGGCTGGGAACTATGATGGGTGCTTGAATGTTTATGAAGAAATGAAGGCTATAGGCATCAAGCCAAACTTGGTTATATATAACTGCTTGTTGGATGCTATGGGTAGGGCTAAAAGACCTTGGCAGATCAAAACCATTTACAAAGAGATGATTAAAAATGGATTTTCACCAAGTTGGGCAACTTATGCTTCTCTTTTACGTGCCTATGGAAGAGCCAGGTATGGTGAGGATGCTCTCATTGTTTACAAGGAGATGAAGGAAAAGGGACTGCAGTTAAACGTAATTCTCTACAATACGCTTTTAGCTATGTGTGCTGATGTTGGCTATGTTAATGAGGCTGTTGAAATTTTTCAAGATATGAAGAGTTCTGGCACTTGCTCACCTGACAGTTGGACATTTTCTTCCATGATCACCATATATTCCTGCGGTGGAAAAGTATCAGAGGCTGAAGAAATGTTGAACGATATGGTGGAAGCTGGTTTTGACCCTAATATCTTTGTCTTAACATCACTAATCCAGTGCTATGGGAAAGCTAAACGTGTTGATGATGTAGTGAGGACATTCAATCAATTGATAGAGTTAGGATTAACTCCAGACGATCGATTCTGTGGCTGCCTTCTCAATGTGATTACCCAGACACCAAAAGGGGAACTTGGTAAGCTGATTGATTGTGTTGTGAGAGCTAATCCAAAACTCGGGTTTGTGGTTGAACTCTTGCTAGGGGAGCAAGACAAGGAAGGAAATTTCAGAACTGAAGCCTCAGAACTCTTTAGTGTTGTCAGTGCTGATGTGAGAAAAGCTTACTGCAATTGCTTAATTGATCTCTGTGTAAATTTAGATCTTTTGGATAAGGCATGTGAACTACTGGATTTGGGGCTTACACTTCAGATATATAAAGATTTGCAGTCCAGGTCTCCAACTCAGTGGTCTCTTTATCTTAAGGGTCTTTCTCTTGGGGCTGCTCTCACTGCATTACACGTTTGGATAAAGGACTTAACAAAGGTACTTGAATCTGGGGAGGAACTTCCACCATTACTTGGAATAAATACTGGACATGGAAAACACAAGTATTCAGATAAGGGTTTGGCAAGCGTCTTTGAATCACATTTAAAGGAATTAAATGCTCCATTCCATGAGGCTCCAGAAAAGGTCGGATGGTTTTTGACAACTAAAGTGGCAGCAAAATCATGGTTGGAGTCTAGAAGTTCCCCTGAATTGGTTGCAGCATAG

mRNA sequence

ATGGCGTTCCAGCTCTGCTATTCGCCGCCCACCTTCTTTACCGAACACCATTTCCTTTCCAATTCTCTCACTCCTCAACGTAAAACAACTCTGTCCAACTCCTCTCCTCTTTTCAAGCTCAGTCCCATTCCTCGTCACTCAAAACCGTTCCTCCAAATTACCAATGTCTCGCTACAGGAACACGCTCCTCAAGATACCCAAAATACAATTCCCTCTGCTGATGAAATCTCCAAATACCCAGATTCGAAATCCGGTTCCTCCTCGAACAGCTCCGTTTGGGTCAATCCTAGAAGCCCCAGAGCTTCCAAACTTCGGAAGCAGTCGTACGAAGCAAGATATGCTTCTCTTATTAGAGTATCGGAGTCTTTAGACTCTTCTAATCCATGTGAGGTAGATGTTGCTGATGTCTTGAAGGTGATAGGTAATAACATTTTAGAACGGGACGCTATTTTAGTGCTGAATAACATGTCAAATTCCCAAACTGCGTTGCTTGCTCTTCGCTACTTCCAGGATATGCTGAAATCAAGTAAACAGACAATTTTTTATAACGTGACACTGAAGGTGTTTAGGAAGTGCAGAGATATGGAGGGTGCAGAGAAACTGTTCGAAGAAATGATTAACAGAGGAGTTAAGCCTGATAATGTGACATTTTCTACAATTATTAGTTGTGCTAGGTTGTGTTCTTTACCAAGTAAGGCTGTTGAGTGGTTTGAGAAGATGCCAAGTTTTGACTGTAATCCTGATGATGTTACTTACTCTACGATGATTGATGCCTATGGACGTGCTGGTAATGTTGACATGGCTTTCAGTTTGTATGACCGTGCAAGAACGGAAAACTGGCGAATTGATCCTGCGACATTCTCGACAATGATCAAAATTCATGGAGTGGCTGGGAACTATGATGGGTGCTTGAATGTTTATGAAGAAATGAAGGCTATAGGCATCAAGCCAAACTTGGTTATATATAACTGCTTGTTGGATGCTATGGGTAGGGCTAAAAGACCTTGGCAGATCAAAACCATTTACAAAGAGATGATTAAAAATGGATTTTCACCAAGTTGGGCAACTTATGCTTCTCTTTTACGTGCCTATGGAAGAGCCAGGTATGGTGAGGATGCTCTCATTGTTTACAAGGAGATGAAGGAAAAGGGACTGCAGTTAAACGTAATTCTCTACAATACGCTTTTAGCTATGTGTGCTGATGTTGGCTATGTTAATGAGGCTGTTGAAATTTTTCAAGATATGAAGAGTTCTGGCACTTGCTCACCTGACAGTTGGACATTTTCTTCCATGATCACCATATATTCCTGCGGTGGAAAAGTATCAGAGGCTGAAGAAATGTTGAACGATATGGTGGAAGCTGGTTTTGACCCTAATATCTTTGTCTTAACATCACTAATCCAGTGCTATGGGAAAGCTAAACGTGTTGATGATGTAGTGAGGACATTCAATCAATTGATAGAGTTAGGATTAACTCCAGACGATCGATTCTGTGGCTGCCTTCTCAATGTGATTACCCAGACACCAAAAGGGGAACTTGGTAAGCTGATTGATTGTGTTGTGAGAGCTAATCCAAAACTCGGGTTTGTGGTTGAACTCTTGCTAGGGGAGCAAGACAAGGAAGGAAATTTCAGAACTGAAGCCTCAGAACTCTTTAGTGTTGTCAGTGCTGATGTGAGAAAAGCTTACTGCAATTGCTTAATTGATCTCTGTGTAAATTTAGATCTTTTGGATAAGGCATGTGAACTACTGGATTTGGGGCTTACACTTCAGATATATAAAGATTTGCAGTCCAGGTCTCCAACTCAGTGGTCTCTTTATCTTAAGGGTCTTTCTCTTGGGGCTGCTCTCACTGCATTACACGTTTGGATAAAGGACTTAACAAAGGTACTTGAATCTGGGGAGGAACTTCCACCATTACTTGGAATAAATACTGGACATGGAAAACACAAGTATTCAGATAAGGGTTTGGCAAGCGTCTTTGAATCACATTTAAAGGAATTAAATGCTCCATTCCATGAGGCTCCAGAAAAGGTCGGATGGTTTTTGACAACTAAAGTGGCAGCAAAATCATGGTTGGAGTCTAGAAGTTCCCCTGAATTGGTTGCAGCATAG

Coding sequence (CDS)

ATGGCGTTCCAGCTCTGCTATTCGCCGCCCACCTTCTTTACCGAACACCATTTCCTTTCCAATTCTCTCACTCCTCAACGTAAAACAACTCTGTCCAACTCCTCTCCTCTTTTCAAGCTCAGTCCCATTCCTCGTCACTCAAAACCGTTCCTCCAAATTACCAATGTCTCGCTACAGGAACACGCTCCTCAAGATACCCAAAATACAATTCCCTCTGCTGATGAAATCTCCAAATACCCAGATTCGAAATCCGGTTCCTCCTCGAACAGCTCCGTTTGGGTCAATCCTAGAAGCCCCAGAGCTTCCAAACTTCGGAAGCAGTCGTACGAAGCAAGATATGCTTCTCTTATTAGAGTATCGGAGTCTTTAGACTCTTCTAATCCATGTGAGGTAGATGTTGCTGATGTCTTGAAGGTGATAGGTAATAACATTTTAGAACGGGACGCTATTTTAGTGCTGAATAACATGTCAAATTCCCAAACTGCGTTGCTTGCTCTTCGCTACTTCCAGGATATGCTGAAATCAAGTAAACAGACAATTTTTTATAACGTGACACTGAAGGTGTTTAGGAAGTGCAGAGATATGGAGGGTGCAGAGAAACTGTTCGAAGAAATGATTAACAGAGGAGTTAAGCCTGATAATGTGACATTTTCTACAATTATTAGTTGTGCTAGGTTGTGTTCTTTACCAAGTAAGGCTGTTGAGTGGTTTGAGAAGATGCCAAGTTTTGACTGTAATCCTGATGATGTTACTTACTCTACGATGATTGATGCCTATGGACGTGCTGGTAATGTTGACATGGCTTTCAGTTTGTATGACCGTGCAAGAACGGAAAACTGGCGAATTGATCCTGCGACATTCTCGACAATGATCAAAATTCATGGAGTGGCTGGGAACTATGATGGGTGCTTGAATGTTTATGAAGAAATGAAGGCTATAGGCATCAAGCCAAACTTGGTTATATATAACTGCTTGTTGGATGCTATGGGTAGGGCTAAAAGACCTTGGCAGATCAAAACCATTTACAAAGAGATGATTAAAAATGGATTTTCACCAAGTTGGGCAACTTATGCTTCTCTTTTACGTGCCTATGGAAGAGCCAGGTATGGTGAGGATGCTCTCATTGTTTACAAGGAGATGAAGGAAAAGGGACTGCAGTTAAACGTAATTCTCTACAATACGCTTTTAGCTATGTGTGCTGATGTTGGCTATGTTAATGAGGCTGTTGAAATTTTTCAAGATATGAAGAGTTCTGGCACTTGCTCACCTGACAGTTGGACATTTTCTTCCATGATCACCATATATTCCTGCGGTGGAAAAGTATCAGAGGCTGAAGAAATGTTGAACGATATGGTGGAAGCTGGTTTTGACCCTAATATCTTTGTCTTAACATCACTAATCCAGTGCTATGGGAAAGCTAAACGTGTTGATGATGTAGTGAGGACATTCAATCAATTGATAGAGTTAGGATTAACTCCAGACGATCGATTCTGTGGCTGCCTTCTCAATGTGATTACCCAGACACCAAAAGGGGAACTTGGTAAGCTGATTGATTGTGTTGTGAGAGCTAATCCAAAACTCGGGTTTGTGGTTGAACTCTTGCTAGGGGAGCAAGACAAGGAAGGAAATTTCAGAACTGAAGCCTCAGAACTCTTTAGTGTTGTCAGTGCTGATGTGAGAAAAGCTTACTGCAATTGCTTAATTGATCTCTGTGTAAATTTAGATCTTTTGGATAAGGCATGTGAACTACTGGATTTGGGGCTTACACTTCAGATATATAAAGATTTGCAGTCCAGGTCTCCAACTCAGTGGTCTCTTTATCTTAAGGGTCTTTCTCTTGGGGCTGCTCTCACTGCATTACACGTTTGGATAAAGGACTTAACAAAGGTACTTGAATCTGGGGAGGAACTTCCACCATTACTTGGAATAAATACTGGACATGGAAAACACAAGTATTCAGATAAGGGTTTGGCAAGCGTCTTTGAATCACATTTAAAGGAATTAAATGCTCCATTCCATGAGGCTCCAGAAAAGGTCGGATGGTTTTTGACAACTAAAGTGGCAGCAAAATCATGGTTGGAGTCTAGAAGTTCCCCTGAATTGGTTGCAGCATAG

Protein sequence

MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTLSNSSPLFKLSPIPRHSKPFLQITNVSLQEHAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRVSESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQTIFYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFSTIISCARLCSLPSKAVEWFEKMPSFDCNPDDVTYSTMIDAYGRAGNVDMAFSLYDRARTENWRIDPATFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKPNLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRARYGEDALIVYKEMKEKGLQLNVILYNTLLAMCADVGYVNEAVEIFQDMKSSGTCSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFNQLIELGLTPDDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQDKEGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRSPTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA

Homology

[Close]

BLAST of CsaV3_1G015490 vs. NCBI nr
Match: XP_004139516.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Cucumis sativus] >KGN64994.1 hypothetical protein Csa_1G173140 [Cucumis sativus])

HSP 1 Score: 824.3 bits (2128), Expect = 3.1e-235
Identity = 704/704 (100.00%), Postives = 704/704 (100.00%), Query Frame = 0


Query: 1   MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTLSNSSPLFKLSPIPRHSKPFLQITNVSLQE 60
           MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTLSNSSPLFKLSPIPRHSKPFLQITNVSLQE
Sbjct: 1   MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTLSNSSPLFKLSPIPRHSKPFLQITNVSLQE 60

Query: 61  HAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRVS 120
           HAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRVS
Sbjct: 61  HAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRVS 120

Query: 121 ESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQTI 180
           ESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQTI
Sbjct: 121 ESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQTI 180

Query: 181 FYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFXXXXXXXXXXXXXXXXXXXXXXX 240
           FYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 FYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 CSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXXX 480
           CSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 421 CSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQDK 540
           XXXXXXXXXXXXXXDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQDK
Sbjct: 481 XXXXXXXXXXXXXXDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQDK 540

Query: 541 EGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRS 600
           EGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRS
Sbjct: 541 EGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRS 600

Query: 601 PTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV 660
           PTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV
Sbjct: 601 PTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV 660

Query: 661 FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 705
           FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA
Sbjct: 661 FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 704

[Close]

BLAST of CsaV3_1G015490 vs. NCBI nr
Match: XP_008464281.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Cucumis melo])

HSP 1 Score: 776.2 bits (2003), Expect = 9.7e-221
Identity = 674/704 (95.74%), Postives = 689/704 (97.87%), Query Frame = 0


Query: 1   MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTLSNSSPLFKLSPIPRHSKPFLQITNVSLQE 60
           MAFQLC+SPPTFFT HH LSNSLTPQRKTTLSNSSPLFKL+PIPRHS PFLQITN+SLQE
Sbjct: 1   MAFQLCHSPPTFFTYHHSLSNSLTPQRKTTLSNSSPLFKLNPIPRHSTPFLQITNISLQE 60

Query: 61  HAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRVS 120
           H+PQ+T NTIPS DEISKY D+KSGSSS SSVWVNPRSPRASKLRKQSYEARYASL+R+S
Sbjct: 61  HSPQETHNTIPSDDEISKYSDAKSGSSSKSSVWVNPRSPRASKLRKQSYEARYASLVRIS 120

Query: 121 ESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQTI 180
           ESLDS NPCEVDVADVLKVIGNNILE+DA++VLNNMSNSQTALLALRYFQDMLKSSKQTI
Sbjct: 121 ESLDSCNPCEVDVADVLKVIGNNILEQDAVVVLNNMSNSQTALLALRYFQDMLKSSKQTI 180

Query: 181 FYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFXXXXXXXXXXXXXXXXXXXXXXX 240
           FYNVTLKVFRKCRDMEGAE+LFEEM+NRGVKPDNVT XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 FYNVTLKVFRKCRDMEGAEELFEEMLNRGVKPDNVTXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT 420

Query: 421 CSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXXX 480
           CSPDSWTFSSMITIYSC GKVSEAEEMLNDMVEAGF XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 421 CSPDSWTFSSMITIYSCSGKVSEAEEMLNDMVEAGFDXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQDK 540
           XXXXXXXXXXXXXXDRFCGCLLNVITQTPK E+ KLIDCVVRANPKLGFVVELLLGEQDK
Sbjct: 481 XXXXXXXXXXXXXXDRFCGCLLNVITQTPKEEISKLIDCVVRANPKLGFVVELLLGEQDK 540

Query: 541 EGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRS 600
           EGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELL+LGLTLQIYKDLQSRS
Sbjct: 541 EGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLNLGLTLQIYKDLQSRS 600

Query: 601 PTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV 660
           PTQWSLYLKGLSLGAALTALHVWI DLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV
Sbjct: 601 PTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV 660

Query: 661 FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 705
           FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA
Sbjct: 661 FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 704

[Close]

BLAST of CsaV3_1G015490 vs. NCBI nr
Match: XP_023520706.1 (pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 677.2 bits (1746), Expect = 6.1e-191
Identity = 587/705 (83.26%), Postives = 615/705 (87.23%), Query Frame = 0


Query: 1   MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTL-SNSSPLFKLSPIPRHSKPFLQITNVSLQ 60
           MAFQL + P TFFT+H    NSLT   KTTL  +SS +FKL+PIP HSKPFLQITNVS Q
Sbjct: 1   MAFQLSHFPSTFFTDH----NSLTFHYKTTLCKSSSRVFKLNPIPYHSKPFLQITNVSPQ 60

Query: 61  EHAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRV 120
           E+APQ+T+N+ PS DEISK+PD KSGSSS +SVWVNP SPRASKLRKQSYEARYASL ++
Sbjct: 61  EYAPQETRNSSPSDDEISKFPDGKSGSSSKTSVWVNPSSPRASKLRKQSYEARYASLKKI 120

Query: 121 SESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQT 180
           SESLDS NPCE DVADVLK I + ILE+DAI VLNNMSNSQTALL LRYFQD+LKSSKQ 
Sbjct: 121 SESLDSCNPCEDDVADVLKRIDSKILEQDAIGVLNNMSNSQTALLVLRYFQDVLKSSKQA 180

Query: 181 IFYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFXXXXXXXXXXXXXXXXXXXXXX 240
           +FYNVTLKVFRKCRD EGAEKLF+EM+ RGVKPDNVTF         XXXXXXXXXXXXX
Sbjct: 181 VFYNVTLKVFRKCRDFEGAEKLFDEMLERGVKPDNVTFSTIISCARFXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XCSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXX 480
            CSPDSWTFSSMITIYSC G VSEAEEMLN+M+EAGF                       
Sbjct: 421 TCSPDSWTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDV 480

Query: 481 XXXXXXXXXXXXXXXDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQD 540
                          DRFCGCLLNVITQTPK EL KLIDCV RANPKLGFVV+LLLGE+D
Sbjct: 481 VRTFDRLLELGLTPDDRFCGCLLNVITQTPKHELSKLIDCVERANPKLGFVVKLLLGEKD 540

Query: 541 KEGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSR 600
            EG+FRTEASELFSVVS DVRKAYCNCLIDLCVNLDLLDKACELLDLGL++QIY DLQSR
Sbjct: 541 MEGDFRTEASELFSVVSDDVRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSR 600

Query: 601 SPTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLAS 660
           SPTQWSLYLKGLSLGAALTALHVWI DLTK L+SGEELPPLLGINTGHGKHKYSDKGL+S
Sbjct: 601 SPTQWSLYLKGLSLGAALTALHVWINDLTKELKSGEELPPLLGINTGHGKHKYSDKGLSS 660

Query: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 705
           VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESR SPELVAA
Sbjct: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRGSPELVAA 701

[Close]

BLAST of CsaV3_1G015490 vs. NCBI nr
Match: XP_022927501.1 (pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Cucurbita moschata])

HSP 1 Score: 676.0 bits (1743), Expect = 1.4e-190
Identity = 592/705 (83.97%), Postives = 618/705 (87.66%), Query Frame = 0


Query: 1   MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTLSNS-SPLFKLSPIPRHSKPFLQITNVSLQ 60
           MAFQL + P TFFT+H    NSLT   KTTL  S S +FKL+PIP HSKPFLQITNVS Q
Sbjct: 1   MAFQLSHFPSTFFTDH----NSLTFHYKTTLCKSFSRVFKLNPIPYHSKPFLQITNVSQQ 60

Query: 61  EHAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRV 120
           E+APQ+T+N  PS DEISK+PD KSGSSS +SVWVNP SPRASKLRKQSYEARYASL ++
Sbjct: 61  EYAPQETRNPSPSDDEISKFPDGKSGSSSKTSVWVNPSSPRASKLRKQSYEARYASLKKI 120

Query: 121 SESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQT 180
           SESLDS NPCEVDVADVLK I + ILE+DAI VLNNMSNSQTALL  RYFQD+LKSSKQ 
Sbjct: 121 SESLDSCNPCEVDVADVLKRIDSKILEQDAIGVLNNMSNSQTALLVHRYFQDVLKSSKQA 180

Query: 181 IFYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFXXXXXXXXXXXXXXXXXXXXXX 240
           +FYNVTLKVFRKCRD EGAEKLF+EM+ RGVKPDNVTF    XXXXXXXXXXXXXXXXXX
Sbjct: 181 VFYNVTLKVFRKCRDFEGAEKLFDEMLERGVKPDNVTFSTIIXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XCSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXX 480
            CSPDSWTFSSMITIYSC G VSEAEEMLN+M+EAGF                       
Sbjct: 421 TCSPDSWTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDV 480

Query: 481 XXXXXXXXXXXXXXXDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQD 540
                          DRFCGCLLNVITQTPK EL KLIDCV RANPKLGFVV+LLLGE+D
Sbjct: 481 VRTFDRLLELGLTPDDRFCGCLLNVITQTPKHELSKLIDCVERANPKLGFVVKLLLGEKD 540

Query: 541 KEGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSR 600
            EG+FRTEASELFSVVS DVRKAYCNCLIDLCVNLDLLDKACELLDLGL++QIY DLQSR
Sbjct: 541 MEGDFRTEASELFSVVSDDVRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSR 600

Query: 601 SPTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLAS 660
           SPTQWSLYLKGLSLGAALTALHVWI DLTK L+SGEELPPLLGINTGHGKHKYSDKGL+S
Sbjct: 601 SPTQWSLYLKGLSLGAALTALHVWINDLTKELKSGEELPPLLGINTGHGKHKYSDKGLSS 660

Query: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 705
           VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESR SPELVAA
Sbjct: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRGSPELVAA 701

[Close]

BLAST of CsaV3_1G015490 vs. NCBI nr
Match: XP_022973114.1 (pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Cucurbita maxima])

HSP 1 Score: 670.6 bits (1729), Expect = 5.7e-189
Identity = 591/705 (83.83%), Postives = 619/705 (87.80%), Query Frame = 0


Query: 1   MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTL-SNSSPLFKLSPIPRHSKPFLQITNVSLQ 60
           MAFQL + P TFFT+H    NSLT   KTTL  +SS +FKL+PIP HSKPFLQITNVS Q
Sbjct: 1   MAFQLSHFPYTFFTDH----NSLTFHSKTTLCKSSSRVFKLNPIPYHSKPFLQITNVSQQ 60

Query: 61  EHAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRV 120
           E+APQ+T+N  PS DEISK+PD KSGSSS +SVWVNP SPRASKLRKQSYEARYASL ++
Sbjct: 61  EYAPQETRNPSPSDDEISKFPDGKSGSSSKTSVWVNPSSPRASKLRKQSYEARYASLKKI 120

Query: 121 SESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQT 180
           SESLDS NPCE DVADVLK I   ILE+DAI VLNNMSNSQTALL LRYFQD+LKSSKQ 
Sbjct: 121 SESLDSCNPCEDDVADVLKRIDRKILEQDAIGVLNNMSNSQTALLVLRYFQDVLKSSKQA 180

Query: 181 IFYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFXXXXXXXXXXXXXXXXXXXXXX 240
           +FYNVTLKVFRKC+D EGAEKLF+EM+ RGVKPDNVTF  XXXXXXXXXXXXXXXXXXXX
Sbjct: 181 VFYNVTLKVFRKCKDFEGAEKLFDEMLKRGVKPDNVTFSTXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XCSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXX 480
            CSPDSWTFSSMITIYSC G VSEAEEMLN+M+EAGF                       
Sbjct: 421 TCSPDSWTFSSMITIYSCSGNVSEAEEMLNEMMEAGFDPNIFVLTSLIQCYGKAKRVDDV 480

Query: 481 XXXXXXXXXXXXXXXDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQD 540
                          DRFCGCLLNVITQTPK EL KLIDCV RANPKLGF+V LL+GE+D
Sbjct: 481 VRTFDRLLELGLTPDDRFCGCLLNVITQTPKHELSKLIDCVERANPKLGFMVRLLVGEKD 540

Query: 541 KEGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSR 600
            EG+FRTEASELFSVVS DVRKAYCNCLIDLCVNLDLLDKACELLDLGL++QIY DLQSR
Sbjct: 541 MEGDFRTEASELFSVVSDDVRKAYCNCLIDLCVNLDLLDKACELLDLGLSVQIYTDLQSR 600

Query: 601 SPTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLAS 660
           S TQWSLYLKGLSLGAALTALHVWI DLTK L+SGEELPPLLGINTGHGKHKYSDKGL+S
Sbjct: 601 STTQWSLYLKGLSLGAALTALHVWINDLTKELKSGEELPPLLGINTGHGKHKYSDKGLSS 660

Query: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 705
           VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA
Sbjct: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 701

[Close]

BLAST of CsaV3_1G015490 vs. TAIR10
Match: AT4G16390.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 436.0 bits (1120), Expect = 4.3e-122
Identity = 460/702 (65.53%), Postives = 533/702 (75.93%), Query Frame = 0


Query: 5   LCYSPPTFFTEHHFLSNSLTPQRKTTLSNSSPLFKLSPIPRHSKPFLQITNVSLQEHAPQ 64
           LC SP +   +   L N L+   K+T  +    +  +    HS+  LQ T+VS+QE  PQ
Sbjct: 6   LCSSPSSLLHDPLPLCNLLSVYPKSTPRSFLSSYNPNSSHFHSRNLLQATHVSVQEAIPQ 65

Query: 65  DTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRVSESLD 124
             ++ +   D     P     ++S S VWVNP+SPRAS+LR++SY++RY+SLI+++ESLD
Sbjct: 66  SEKSKLVDVDLPIPEP-----TASKSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLD 125

Query: 125 SSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQTIFYNV 184
           +  P E DV DV+   G  + E+DA++ LNNM+N +TA L L    + +K S++ I YNV
Sbjct: 126 ACKPNEADVCDVITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNV 185

Query: 185 TLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFXXXXXXXXXXXXXXXXXXXXXXXXXXX 244
           T+KVFRK +D+E +EKLF+EM+ RG+KPDN TF             XXXXXXXXXXXXXX
Sbjct: 186 TMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPXXXXXXXXXXXXXX 245

Query: 245 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 304
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 246 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 305

Query: 305 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 364
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 306 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 365

Query: 365 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSPD 424
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   C PD
Sbjct: 366 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCETCDPD 425

Query: 425 SWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXXXXXXX 484
           SWTFSS+IT+Y+C G+VSEAE  L  M EAGF                            
Sbjct: 426 SWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFD 485

Query: 485 XXXXXXXXXXDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQD-KEGN 544
                     DRFCGCLLNV+TQTP  E+GKLI CV +A PKLG VV++L+ EQ+ +EG 
Sbjct: 486 QVLELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGV 545

Query: 545 FRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRSPTQ 604
           F+ EASEL   + +DV+KAY NCLIDLCVNL+ L++ACE+L LGL   IY  LQS+S TQ
Sbjct: 546 FKKEASELIDSIGSDVKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQ 605

Query: 605 WSLYLKGLSLGAALTALHVWIKDLTK-VLESGEELPPLLGINTGHGKHKYSDKGLASVFE 664
           WSL+LK LSLGAALTALHVW+ DL++  LESGEE PPLLGINTGHGKHKYSDKGLA+VFE
Sbjct: 606 WSLHLKSLSLGAALTALHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFE 665

Query: 665 SHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 705
           SHLKELNAPFHEAP+KVGWFLTT VAAK+WLESR S   V+A
Sbjct: 666 SHLKELNAPFHEAPDKVGWFLTTSVAAKAWLESRRSAGGVSA 702

[Close]

BLAST of CsaV3_1G015490 vs. TAIR10
Match: AT5G46580.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 144.1 bits (362), Expect = 3.4e-34
Identity = 114/280 (40.71%), Postives = 169/280 (60.36%), Query Frame = 0


Query: 421 CSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXXX 480
           C PD++++++M+ IY  GGK  +A E+  +M++AG          XXXXXXXXXXXXXXX
Sbjct: 428 CRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCXXXXXXXXXXXXXXX 487

Query: 481 XXXXXXXXXXXXXXDRFCGCLLNVITQTPKGE-LGKLIDCVVRANPKLGFVVELLLGEQD 540
           XXXXXXXXXXXXXX                 E   K++ C+ RAN KL   V L++ E+ 
Sbjct: 488 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSEDAEKVMACLERANKKLVTFVNLIVDEKT 547

Query: 541 KEGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSR 600
           +    + E   + +    + R+ +CNCLID+C   +  ++A ELL LG    +Y  L ++
Sbjct: 548 EYETVKEEFKLVINATQVEARRPFCNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNK 607

Query: 601 SPTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLAS 660
           +  +WSL ++ LS+GAA TAL  W++ L  +++  EELP L    TG G H++S +GLA+
Sbjct: 608 TIKEWSLDVRSLSVGAAETALEEWMRTLANIIKRQEELPELFLAQTGTGTHRFS-QGLAN 667

Query: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSP 700
            F  HL++L+APF ++ ++ G F+ TK    SWLES+  P
Sbjct: 668 SFALHLQQLSAPFRQS-DRPGIFVATKEDLVSWLESKFPP 705

[Close]

BLAST of CsaV3_1G015490 vs. TAIR10
Match: AT2G31400.1 (genomes uncoupled 1)

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-11
Identity = 54/185 (29.19%), Postives = 91/185 (49.19%), Query Frame = 0


Query: 524 NPKLGFVVELLLGEQDKEGNFRTEASELFSVVS---ADVRKAYCNCLIDLCVNLDLLDKA 583
           N   G V  LL+G+++   N   +A  LF  V+        A+ N L D+  +     + 
Sbjct: 706 NKVYGVVHGLLMGQRE---NVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFG-QKRG 765

Query: 584 CELLDL-GLTLQIYKDLQSRSPTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPP 643
            EL+ L G + Q+++++ S S     L L  +S GAA   +H W+ ++  ++  G ELP 
Sbjct: 766 AELVALEGRSRQVWENVWSDS----CLDLHLMSSGAARAMVHAWLLNIRSIVYEGHELPK 825

Query: 644 LLGINTGHGKHK--YSDKGLASVFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRS 703
           +L I TG GKH     D  L    E  L+ ++APFH +   +G F ++     +WL   +
Sbjct: 826 VLSILTGWGKHSKVVGDGALRRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATWLRESA 882

[Close]

BLAST of CsaV3_1G015490 vs. Swiss-Prot
Match: sp|Q8GWE0|PP314_ARATH (Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=P67 PE=1 SV=3)

HSP 1 Score: 436.0 bits (1120), Expect = 7.8e-121
Identity = 460/702 (65.53%), Postives = 533/702 (75.93%), Query Frame = 0


Query: 5   LCYSPPTFFTEHHFLSNSLTPQRKTTLSNSSPLFKLSPIPRHSKPFLQITNVSLQEHAPQ 64
           LC SP +   +   L N L+   K+T  +    +  +    HS+  LQ T+VS+QE  PQ
Sbjct: 6   LCSSPSSLLHDPLPLCNLLSVYPKSTPRSFLSSYNPNSSHFHSRNLLQATHVSVQEAIPQ 65

Query: 65  DTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRVSESLD 124
             ++ +   D     P     ++S S VWVNP+SPRAS+LR++SY++RY+SLI+++ESLD
Sbjct: 66  SEKSKLVDVDLPIPEP-----TASKSYVWVNPKSPRASQLRRKSYDSRYSSLIKLAESLD 125

Query: 125 SSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQTIFYNV 184
           +  P E DV DV+   G  + E+DA++ LNNM+N +TA L L    + +K S++ I YNV
Sbjct: 126 ACKPNEADVCDVITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNV 185

Query: 185 TLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFXXXXXXXXXXXXXXXXXXXXXXXXXXX 244
           T+KVFRK +D+E +EKLF+EM+ RG+KPDN TF             XXXXXXXXXXXXXX
Sbjct: 186 TMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPXXXXXXXXXXXXXX 245

Query: 245 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 304
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 246 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 305

Query: 305 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 364
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 306 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 365

Query: 365 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSPD 424
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   C PD
Sbjct: 366 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCETCDPD 425

Query: 425 SWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXXXXXXX 484
           SWTFSS+IT+Y+C G+VSEAE  L  M EAGF                            
Sbjct: 426 SWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFD 485

Query: 485 XXXXXXXXXXDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQD-KEGN 544
                     DRFCGCLLNV+TQTP  E+GKLI CV +A PKLG VV++L+ EQ+ +EG 
Sbjct: 486 QVLELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGV 545

Query: 545 FRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRSPTQ 604
           F+ EASEL   + +DV+KAY NCLIDLCVNL+ L++ACE+L LGL   IY  LQS+S TQ
Sbjct: 546 FKKEASELIDSIGSDVKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQ 605

Query: 605 WSLYLKGLSLGAALTALHVWIKDLTK-VLESGEELPPLLGINTGHGKHKYSDKGLASVFE 664
           WSL+LK LSLGAALTALHVW+ DL++  LESGEE PPLLGINTGHGKHKYSDKGLA+VFE
Sbjct: 606 WSLHLKSLSLGAALTALHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFE 665

Query: 665 SHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 705
           SHLKELNAPFHEAP+KVGWFLTT VAAK+WLESR S   V+A
Sbjct: 666 SHLKELNAPFHEAPDKVGWFLTTSVAAKAWLESRRSAGGVSA 702

[Close]

BLAST of CsaV3_1G015490 vs. Swiss-Prot
Match: sp|Q10PZ4|ATP4_ORYSJ (Pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0215900 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 9.6e-79
Identity = 149/281 (53.02%), Postives = 185/281 (65.84%), Query Frame = 0


Query: 423 PDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXXXXX 482
           PDSW++SSM+T+YSC G V+ AE +LN+MVEAGF                          
Sbjct: 395 PDSWSYSSMVTLYSCTGNVAGAEGILNEMVEAGFKPNIFILTSLIRCYGKAGRTDDVVRS 454

Query: 483 XXXXXXXXXXXXDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQDKEG 542
                       DRFCGCLL V   TP  ELGK+I C+ R++ +LG VV LL+       
Sbjct: 455 FAMLEDLGITPDDRFCGCLLTVAAGTPADELGKVIGCIDRSSAQLGAVVRLLVDAAAPSE 514

Query: 543 NFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRSPT 602
             R  A EL       VR  YCNCL+DL VNL  ++KAC LLD+ L L IY ++Q+R+ T
Sbjct: 515 PLREAAGELLGGARGVVRMPYCNCLMDLAVNLSQMEKACALLDVALRLGIYSNVQTRTQT 574

Query: 603 QWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASVFE 662
           QWSL+L+GLS+GAALT LHVW+ DL   L++G+ELPPLLGI+TG GK+ YS KGLA+VFE
Sbjct: 575 QWSLHLRGLSVGAALTTLHVWMSDLYAALQAGDELPPLLGIHTGQGKNTYSYKGLATVFE 634

Query: 663 SHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVA 704
           SHLKEL+APFHEAP+K GWFLTT VAA+ WLE++ S ELVA
Sbjct: 635 SHLKELDAPFHEAPDKAGWFLTTSVAARHWLETKKSAELVA 675

[Close]

BLAST of CsaV3_1G015490 vs. Swiss-Prot
Match: sp|B4F8Z1|ATP4_MAIZE (Pentatricopeptide repeat-containing protein ATP4, chloroplastic OS=Zea mays OX=4577 GN=ATP4 PE=2 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.2e-76
Identity = 147/281 (52.31%), Postives = 187/281 (66.55%), Query Frame = 0


Query: 423 PDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXXXXX 482
           PDSW++SSM+T+YS    V  AE +LN+MVEAGF                          
Sbjct: 410 PDSWSYSSMVTLYSSTANVLSAEGILNEMVEAGFKPNIFVLTSLIRCYGKVGRTDDVVRS 469

Query: 483 XXXXXXXXXXXXDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQDKEG 542
                       DRFCGCLL+V   TP  ELGK+I C+ R+N +LG VV+LL+     E 
Sbjct: 470 FGMLQDLGIIPDDRFCGCLLSVAANTPAEELGKVISCIERSNVQLGAVVKLLVDRSSSE- 529

Query: 543 NFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRSPT 602
           +FR  A EL       V+  YCNCL+DLCVNL+ ++KAC LLD    L IY ++Q+R+ T
Sbjct: 530 SFREAARELLRSSRGVVKMPYCNCLMDLCVNLNQMEKACALLDAAQQLGIYANIQTRTQT 589

Query: 603 QWSLYLKGLSLGAALTALHVWIKDLTKVLESGEE-LPPLLGINTGHGKHKYSDKGLASVF 662
           QWSL+L+GLS+GAALT LHVW+ DL   L++G E LPPLLGI+TG GK+ YSD+GLA++F
Sbjct: 590 QWSLHLRGLSVGAALTTLHVWMNDLYTSLQTGNEGLPPLLGIHTGQGKNTYSDRGLAAMF 649

Query: 663 ESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELV 703
           E+HLKEL+APFHEAP+K GWFLTT VAAK WLES+++ ELV
Sbjct: 650 EAHLKELDAPFHEAPDKAGWFLTTNVAAKQWLESKAASELV 689

[Close]

BLAST of CsaV3_1G015490 vs. Swiss-Prot
Match: sp|Q9LS25|PP420_ARATH (Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g46580 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 6.1e-33
Identity = 114/280 (40.71%), Postives = 169/280 (60.36%), Query Frame = 0


Query: 421 CSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXXX 480
           C PD++++++M+ IY  GGK  +A E+  +M++AG          XXXXXXXXXXXXXXX
Sbjct: 428 CRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCXXXXXXXXXXXXXXX 487

Query: 481 XXXXXXXXXXXXXXDRFCGCLLNVITQTPKGE-LGKLIDCVVRANPKLGFVVELLLGEQD 540
           XXXXXXXXXXXXXX                 E   K++ C+ RAN KL   V L++ E+ 
Sbjct: 488 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSEDAEKVMACLERANKKLVTFVNLIVDEKT 547

Query: 541 KEGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSR 600
           +    + E   + +    + R+ +CNCLID+C   +  ++A ELL LG    +Y  L ++
Sbjct: 548 EYETVKEEFKLVINATQVEARRPFCNCLIDICRGNNRHERAHELLYLGTLFGLYPGLHNK 607

Query: 601 SPTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLAS 660
           +  +WSL ++ LS+GAA TAL  W++ L  +++  EELP L    TG G H++S +GLA+
Sbjct: 608 TIKEWSLDVRSLSVGAAETALEEWMRTLANIIKRQEELPELFLAQTGTGTHRFS-QGLAN 667

Query: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSP 700
            F  HL++L+APF ++ ++ G F+ TK    SWLES+  P
Sbjct: 668 SFALHLQQLSAPFRQS-DRPGIFVATKEDLVSWLESKFPP 705

[Close]

BLAST of CsaV3_1G015490 vs. Swiss-Prot
Match: sp|Q9SIC9|PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-10
Identity = 54/185 (29.19%), Postives = 91/185 (49.19%), Query Frame = 0


Query: 524 NPKLGFVVELLLGEQDKEGNFRTEASELFSVVS---ADVRKAYCNCLIDLCVNLDLLDKA 583
           N   G V  LL+G+++   N   +A  LF  V+        A+ N L D+  +     + 
Sbjct: 706 NKVYGVVHGLLMGQRE---NVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFG-QKRG 765

Query: 584 CELLDL-GLTLQIYKDLQSRSPTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPP 643
            EL+ L G + Q+++++ S S     L L  +S GAA   +H W+ ++  ++  G ELP 
Sbjct: 766 AELVALEGRSRQVWENVWSDS----CLDLHLMSSGAARAMVHAWLLNIRSIVYEGHELPK 825

Query: 644 LLGINTGHGKHK--YSDKGLASVFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRS 703
           +L I TG GKH     D  L    E  L+ ++APFH +   +G F ++     +WL   +
Sbjct: 826 VLSILTGWGKHSKVVGDGALRRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATWLRESA 882

[Close]

BLAST of CsaV3_1G015490 vs. TrEMBL
Match: tr|A0A0A0LVP1|A0A0A0LVP1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173140 PE=4 SV=1)

HSP 1 Score: 824.3 bits (2128), Expect = 2.1e-235
Identity = 704/704 (100.00%), Postives = 704/704 (100.00%), Query Frame = 0


Query: 1   MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTLSNSSPLFKLSPIPRHSKPFLQITNVSLQE 60
           MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTLSNSSPLFKLSPIPRHSKPFLQITNVSLQE
Sbjct: 1   MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTLSNSSPLFKLSPIPRHSKPFLQITNVSLQE 60

Query: 61  HAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRVS 120
           HAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRVS
Sbjct: 61  HAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRVS 120

Query: 121 ESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQTI 180
           ESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQTI
Sbjct: 121 ESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQTI 180

Query: 181 FYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFXXXXXXXXXXXXXXXXXXXXXXX 240
           FYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 FYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 CSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXXX 480
           CSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 421 CSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQDK 540
           XXXXXXXXXXXXXXDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQDK
Sbjct: 481 XXXXXXXXXXXXXXDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQDK 540

Query: 541 EGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRS 600
           EGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRS
Sbjct: 541 EGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRS 600

Query: 601 PTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV 660
           PTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV
Sbjct: 601 PTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV 660

Query: 661 FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 705
           FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA
Sbjct: 661 FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 704

[Close]

BLAST of CsaV3_1G015490 vs. TrEMBL
Match: tr|A0A1S3CL39|A0A1S3CL39_CUCME (pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502208 PE=4 SV=1)

HSP 1 Score: 776.2 bits (2003), Expect = 6.4e-221
Identity = 674/704 (95.74%), Postives = 689/704 (97.87%), Query Frame = 0


Query: 1   MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTLSNSSPLFKLSPIPRHSKPFLQITNVSLQE 60
           MAFQLC+SPPTFFT HH LSNSLTPQRKTTLSNSSPLFKL+PIPRHS PFLQITN+SLQE
Sbjct: 1   MAFQLCHSPPTFFTYHHSLSNSLTPQRKTTLSNSSPLFKLNPIPRHSTPFLQITNISLQE 60

Query: 61  HAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRVS 120
           H+PQ+T NTIPS DEISKY D+KSGSSS SSVWVNPRSPRASKLRKQSYEARYASL+R+S
Sbjct: 61  HSPQETHNTIPSDDEISKYSDAKSGSSSKSSVWVNPRSPRASKLRKQSYEARYASLVRIS 120

Query: 121 ESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQTI 180
           ESLDS NPCEVDVADVLKVIGNNILE+DA++VLNNMSNSQTALLALRYFQDMLKSSKQTI
Sbjct: 121 ESLDSCNPCEVDVADVLKVIGNNILEQDAVVVLNNMSNSQTALLALRYFQDMLKSSKQTI 180

Query: 181 FYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFXXXXXXXXXXXXXXXXXXXXXXX 240
           FYNVTLKVFRKCRDMEGAE+LFEEM+NRGVKPDNVT XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 FYNVTLKVFRKCRDMEGAEELFEEMLNRGVKPDNVTXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT 420

Query: 421 CSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXXX 480
           CSPDSWTFSSMITIYSC GKVSEAEEMLNDMVEAGF XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 421 CSPDSWTFSSMITIYSCSGKVSEAEEMLNDMVEAGFDXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQDK 540
           XXXXXXXXXXXXXXDRFCGCLLNVITQTPK E+ KLIDCVVRANPKLGFVVELLLGEQDK
Sbjct: 481 XXXXXXXXXXXXXXDRFCGCLLNVITQTPKEEISKLIDCVVRANPKLGFVVELLLGEQDK 540

Query: 541 EGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSRS 600
           EGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELL+LGLTLQIYKDLQSRS
Sbjct: 541 EGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLNLGLTLQIYKDLQSRS 600

Query: 601 PTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV 660
           PTQWSLYLKGLSLGAALTALHVWI DLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV
Sbjct: 601 PTQWSLYLKGLSLGAALTALHVWINDLTKVLESGEELPPLLGINTGHGKHKYSDKGLASV 660

Query: 661 FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 705
           FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA
Sbjct: 661 FESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVAA 704

[Close]

BLAST of CsaV3_1G015490 vs. TrEMBL
Match: tr|A0A2I4DEQ4|A0A2I4DEQ4_9ROSI (pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC108979404 PE=4 SV=1)

HSP 1 Score: 553.1 bits (1424), Expect = 8.8e-154
Identity = 523/704 (74.29%), Postives = 585/704 (83.10%), Query Frame = 0


Query: 1   MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTLSNSSPLFKLSPIPRHSKPFLQITNV-SLQ 60
           MA+ LC SP + F +     +SL+  RK  L + +  FK SP+    K   QI +V S+Q
Sbjct: 1   MAYHLCSSPSSLFNDRQPFGSSLSSSRKPILRSLTFFFKPSPLQPQPKTLFQIRHVSSIQ 60

Query: 61  EHAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRV 120
           +  PQ+TQ   PS D  +KYPD KSGSSS S VWVNP+SP+AS+LR+ SY+ARYASL +V
Sbjct: 61  DPIPQETQKASPSEDSNTKYPDGKSGSSSRSYVWVNPKSPKASRLRQHSYDARYASLAKV 120

Query: 121 SESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQT 180
           +ESL+S NP E DVA+VL  +G+ ILE+DA++VLNN  N  TALLALRYFQ  LK +++ 
Sbjct: 121 AESLNSCNPNEEDVAEVLAALGDRILEQDAVIVLNNAMNPDTALLALRYFQQRLKPNREV 180

Query: 181 IFYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFXXXXXXXXXXXXXXXXXXXXXX 240
           + YNVT+KVFRKCRD+ GAEKLF+EM+ RG+KPDNVTFXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 VLYNVTIKVFRKCRDLVGAEKLFDEMLERGLKPDNVTFXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XCSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXX 480
            C PDSW+FSS+ITI+SC GKVSEAE MLN+M+E GF                       
Sbjct: 421 TCKPDSWSFSSLITIHSCSGKVSEAEAMLNEMLEGGFEPNIFVLTSLIQCYGKAQRTDDV 480

Query: 481 XXXXXXXXXXXXXXXDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQD 540
                          +RFCGCLLNV+TQTPK EL KL DCV +AN KLG VV+LLL EQD
Sbjct: 481 VRTFHQLLELGITPDERFCGCLLNVMTQTPKEELNKLTDCVKKANSKLGHVVKLLLEEQD 540

Query: 541 KEGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSR 600
            +G F+ +ASELF  VS DVRKAYCNCLIDL VNL+LL++ACELL+LGLTL+IY D+QSR
Sbjct: 541 SDGEFKKQASELFDSVSLDVRKAYCNCLIDLSVNLNLLERACELLELGLTLEIYTDIQSR 600

Query: 601 SPTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLAS 660
           SPTQWSL+LKGLSLGAALTALHVWI DL+K ++ GEELPPLLGINTGHGKHKYSDKGLA+
Sbjct: 601 SPTQWSLHLKGLSLGAALTALHVWINDLSKAVKCGEELPPLLGINTGHGKHKYSDKGLAT 660

Query: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVA 704
           VFE+HLKELNAPFHEAP+KVGWFLTTKVAA+SWLESRSSPELVA
Sbjct: 661 VFETHLKELNAPFHEAPDKVGWFLTTKVAAQSWLESRSSPELVA 704

[Close]

BLAST of CsaV3_1G015490 vs. TrEMBL
Match: tr|F6HCW3|F6HCW3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0194g00270 PE=4 SV=1)

HSP 1 Score: 545.8 bits (1405), Expect = 1.4e-151
Identity = 509/704 (72.30%), Postives = 575/704 (81.68%), Query Frame = 0


Query: 1   MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTL-SNSSPLFKLSPIPRHSKPFLQITNVSLQ 60
           MA+ LC SP +   +HH+L NSL+  RK+ L S +S  FK + +  HS+ FLQIT+VSL+
Sbjct: 1   MAYHLCSSPSSLCHDHHYLHNSLSFSRKSRLRSFNSFSFKPNSLSLHSRTFLQITHVSLE 60

Query: 61  EHAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRV 120
           +  PQ+TQ    S    S+ PD K    + S +WVNPRSPRASKLR+ SY+ARYASL+++
Sbjct: 61  DPIPQETQKADASNPPNSQDPDRK----TKSYIWVNPRSPRASKLRQHSYDARYASLVKI 120

Query: 121 SESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQT 180
           +ESLDS    E DV+ VL+ +G+ ILE+DA++VLNNM+N +TALLA  +F+  LK S++ 
Sbjct: 121 AESLDSCEATEEDVSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLKPSREV 180

Query: 181 IFYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFXXXXXXXXXXXXXXXXXXXXXX 240
           I YNVTLKVFRKCR+++ AEKLF+EM+ RGVKPDN+TF             XXXXXXXXX
Sbjct: 181 ILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XCSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXX 480
            C PDSWTFSS+ITIYSC GKVSEAE MLN M+EAGF                       
Sbjct: 421 NCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEV 480

Query: 481 XXXXXXXXXXXXXXXDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQD 540
                          DRFCGC+LNV+TQ+PK ELGKLIDC+ +ANPKLG VV+LLL EQ+
Sbjct: 481 VRTFDRLLELDITPDDRFCGCMLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLLEEQN 540

Query: 541 KEGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSR 600
            EG FR EASELF  +SADV+KAYCNCLIDLCVNL+LL+KACEL DLGLTL+IY D+QS+
Sbjct: 541 GEGTFRKEASELFDSISADVKKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQSK 600

Query: 601 SPTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLAS 660
           SPTQWSL+LK LSLGAALTALH+W+ DL+K +E GEELP +LGINTGHGKHKYSDKGLAS
Sbjct: 601 SPTQWSLHLKSLSLGAALTALHIWMNDLSKAVEVGEELPAVLGINTGHGKHKYSDKGLAS 660

Query: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVA 704
           VFESHLKELNAPFHEAP+KVGWFLTTKVAA SWLESRS+PELVA
Sbjct: 661 VFESHLKELNAPFHEAPDKVGWFLTTKVAATSWLESRSAPELVA 700

[Close]

BLAST of CsaV3_1G015490 vs. TrEMBL
Match: tr|A5B4A6|A5B4A6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_001456 PE=4 SV=1)

HSP 1 Score: 542.3 bits (1396), Expect = 1.6e-150
Identity = 507/704 (72.02%), Postives = 572/704 (81.25%), Query Frame = 0


Query: 1   MAFQLCYSPPTFFTEHHFLSNSLTPQRKTTL-SNSSPLFKLSPIPRHSKPFLQITNVSLQ 60
           MA+ LC SP +   +HH+L NSL+  RK+ L S +S  FK + +  HS+ FLQIT+VSL+
Sbjct: 1   MAYHLCSSPSSLCHDHHYLHNSLSFSRKSRLRSFNSFSFKPNSLSLHSRTFLQITHVSLE 60

Query: 61  EHAPQDTQNTIPSADEISKYPDSKSGSSSNSSVWVNPRSPRASKLRKQSYEARYASLIRV 120
           +  PQ+TQ    S    S+ PD K    + S +WVNPRSPRASKLR+ SY+ARYASL+++
Sbjct: 61  DPIPQETQKADASNPPNSQDPDRK----TKSYIWVNPRSPRASKLRQHSYDARYASLVKI 120

Query: 121 SESLDSSNPCEVDVADVLKVIGNNILERDAILVLNNMSNSQTALLALRYFQDMLKSSKQT 180
           +ESLDS    E DV+ VL+ +G+ ILE+DA++VLNNM+N +TALLA  +F+  LK S++ 
Sbjct: 121 AESLDSCEATEEDVSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLKPSREV 180

Query: 181 IFYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPDNVTFXXXXXXXXXXXXXXXXXXXXXX 240
           I YNVTLKVFRKCR+++ AEKLF+EM+ RGVKPDN+TF              XXXXXXXX
Sbjct: 181 ILYNVTLKVFRKCRNLDXAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 XCSPDSWTFSSMITIYSCGGKVSEAEEMLNDMVEAGFXXXXXXXXXXXXXXXXXXXXXXX 480
            C PDSWTFSS+ITIYSC GKVSEAE MLN M+EAGF                       
Sbjct: 421 NCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEV 480

Query: 481 XXXXXXXXXXXXXXXDRFCGCLLNVITQTPKGELGKLIDCVVRANPKLGFVVELLLGEQD 540
                          DRFCGC+LNV+TQ+PK ELGKLIDC+ +ANPKLG VV+LLL EQ+
Sbjct: 481 VRTFDRLLELDITPDDRFCGCMLNVMTQSPKEELGKLIDCIDKANPKLGNVVKLLLEEQN 540

Query: 541 KEGNFRTEASELFSVVSADVRKAYCNCLIDLCVNLDLLDKACELLDLGLTLQIYKDLQSR 600
            EG FR EASELF  +SADV KAYCNCLIDLCVNL+LL+KACEL DLGLTL+IY D+QS+
Sbjct: 541 GEGTFRKEASELFDSISADVXKAYCNCLIDLCVNLNLLEKACELFDLGLTLEIYIDIQSK 600

Query: 601 SPTQWSLYLKGLSLGAALTALHVWIKDLTKVLESGEELPPLLGINTGHGKHKYSDKGLAS 660
           SPTQWSL+LK LSLGAALTALH+W+ DL+K +E GEELP +LGINTGHGKHKYSDKGLAS
Sbjct: 601 SPTQWSLHLKSLSLGAALTALHIWMNDLSKAVEVGEELPAVLGINTGHGKHKYSDKGLAS 660

Query: 661 VFESHLKELNAPFHEAPEKVGWFLTTKVAAKSWLESRSSPELVA 704
           VFESHLKELNAPFHEAP+KV WFLTTKVAA SWLESRS+PELVA
Sbjct: 661 VFESHLKELNAPFHEAPDKVXWFLTTKVAATSWLESRSAPELVA 700

The following BLAST results are available for this feature:

BLAST of CsaV3_1G015490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139516.1	3.1e-235	100.00	PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic ...	[more]
XP_008464281.1	9.7e-221	95.74	PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic ...	[more]
XP_023520706.1	6.1e-191	83.26	pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Cucurbita ...	[more]
XP_022927501.1	1.4e-190	83.97	pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Cucurbita ...	[more]
XP_022973114.1	5.7e-189	83.83	pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Cucurbita ...	[more]

BLAST of CsaV3_1G015490 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16390.1	4.3e-122	65.53	pentatricopeptide (PPR) repeat-containing protein	[more]
AT5G46580.1	3.4e-34	40.71	pentatricopeptide (PPR) repeat-containing protein	[more]
AT2G31400.1	2.4e-11	29.19	genomes uncoupled 1	[more]

BLAST of CsaV3_1G015490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GWE0\|PP314_ARATH	7.8e-121	65.53	Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidop...	[more]
sp\|Q10PZ4\|ATP4_ORYSJ	9.6e-79	53.02	Pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic OS=Oryza...	[more]
sp\|B4F8Z1\|ATP4_MAIZE	1.2e-76	52.31	Pentatricopeptide repeat-containing protein ATP4, chloroplastic OS=Zea mays OX=4...	[more]
sp\|Q9LS25\|PP420_ARATH	6.1e-33	40.71	Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidop...	[more]
sp\|Q9SIC9\|PP178_ARATH	4.3e-10	29.19	Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidop...	[more]

BLAST of CsaV3_1G015490 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LVP1\|A0A0A0LVP1_CUCSA	2.1e-235	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173140 PE=4 SV=1	[more]
tr\|A0A1S3CL39\|A0A1S3CL39_CUCME	6.4e-221	95.74	pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Cucumis ...	[more]
tr\|A0A2I4DEQ4\|A0A2I4DEQ4_9ROSI	8.8e-154	74.29	pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like OS=Jug...	[more]
tr\|F6HCW3\|F6HCW3_VITVI	1.4e-151	72.30	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0194g00270 PE=4 SV=...	[more]
tr\|A5B4A6\|A5B4A6_VITVI	1.6e-150	72.02	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_001456 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR033443	PPR_long
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat
IPR002625	Smr_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0031425	chloroplast RNA processing
biological_process	GO:0045727	positive regulation of translation
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G015490.1	CsaV3_1G015490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002625	Smr domain	SMART	SM00463	SMR_2	coord: 603..693 e-value: 2.8E-14 score: 63.4
IPR002625	Smr domain	PROSITE	PS50828	SMR	coord: 606..690 score: 16.564
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 179..222 e-value: 3.4E-11 score: 43.0 coord: 247..292 e-value: 6.3E-10 score: 39.0
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 286..318 e-value: 4.2E-5 score: 21.4 coord: 320..354 e-value: 1.4E-5 score: 23.0 coord: 182..213 e-value: 1.7E-5 score: 22.7 coord: 391..424 e-value: 6.2E-6 score: 24.1 coord: 463..494 e-value: 5.8E-6 score: 24.2 coord: 215..248 e-value: 0.0014 score: 16.6 coord: 250..283 e-value: 6.9E-8 score: 30.2 coord: 356..388 e-value: 7.2E-6 score: 23.9 coord: 427..459 e-value: 1.0E-6 score: 26.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 308..365 e-value: 1.5E-9 score: 37.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 178..212 score: 10.786
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 459..493 score: 10.424
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 248..282 score: 11.016
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 424..458 score: 11.422
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 318..352 score: 10.764
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 388..422 score: 10.687
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 213..247 score: 8.605
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 353..387 score: 10.49
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 283..317 score: 10.961
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 313..399 e-value: 1.8E-23 score: 84.8 coord: 400..513 e-value: 1.0E-26 score: 95.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 152..312 e-value: 5.2E-38 score: 133.1
IPR033443	Pentacotripeptide-repeat region of PRORP	PFAM	PF17177	PPR_long	coord: 372..508 e-value: 9.9E-12 score: 44.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..97
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 23..703
None	No IPR available	PANTHER	PTHR24015:SF437	SUBFAMILY NOT NAMED	coord: 23..703
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 293..492

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G015490	CSPI01G15330	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G015490	Cucsa.319380	Cucumber (Gy14) v1	cgycucB496
CsaV3_1G015490	CmaCh18G006130	Cucurbita maxima (Rimu)	cmacucB0468
CsaV3_1G015490	CsGy1G015090	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G015490	Cla010975	Watermelon (97103) v1	cucwmB049
CsaV3_1G015490	MELO3C026075	Melon (DHL92) v3.5.1	cucmeB016
CsaV3_1G015490	ClCG01G010980	Watermelon (Charleston Gray)	cucwcgB024
CsaV3_1G015490	Lsi02G011550	Bottle gourd (USVL1VR-Ls)	cuclsiB027
CsaV3_1G015490	MELO3C026075.2	Melon (DHL92) v3.6.1	cucmedB015
CsaV3_1G015490	Cla97C01G010710	Watermelon (97103) v2	cucwmbB008

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G015490	Cucumber (Chinese Long) v3	cuccucB053
CsaV3_1G015490	Silver-seed gourd	carcucB0054
CsaV3_1G015490	Silver-seed gourd	carcucB0056
CsaV3_1G015490	Cucurbita maxima (Rimu)	cmacucB0246
CsaV3_1G015490	Cucurbita maxima (Rimu)	cmacucB0476
CsaV3_1G015490	Cucurbita maxima (Rimu)	cmacucB1004
CsaV3_1G015490	Cucurbita moschata (Rifu)	cmocucB0459
CsaV3_1G015490	Cucurbita pepo (Zucchini)	cpecucB0021
CsaV3_1G015490	Wild cucumber (PI 183967)	cpicucB318
CsaV3_1G015490	Bottle gourd (USVL1VR-Ls)	cuclsiB017
CsaV3_1G015490	Bottle gourd (USVL1VR-Ls)	cuclsiB033
CsaV3_1G015490	Bottle gourd (USVL1VR-Ls)	cuclsiB044
CsaV3_1G015490	Melon (DHL92) v3.5.1	cucmeB029
CsaV3_1G015490	Melon (DHL92) v3.6.1	cucmedB025
CsaV3_1G015490	Watermelon (Charleston Gray)	cucwcgB021
CsaV3_1G015490	Watermelon (Charleston Gray)	cucwcgB029
CsaV3_1G015490	Watermelon (97103) v1	cucwmB064
CsaV3_1G015490	Watermelon (97103) v1	cucwmB067
CsaV3_1G015490	Wax gourd	cucwgoB039