CsaV3_1G014010 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G014010
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	ubiquitin-like protein 5
Location	chr1 : 9469692 .. 9470464 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGAGGTCGTGCTCAACGATCGTCTAGGCAAGAAGGTCCGTGTGAAGTGCAACGAGGATGATACGATTGGAGACTTGAAGAAGCTTGTCGCCGCTCAGACCGGAACCCGGACTGAGAAAATCAGGATCCAGAAGTGGTATAATATCTATAAGGATCATATCACTCTTAAGGATTACGAGATTCATGACGGCATGGGGCTGGAACTCTATTACAATTGATTACGTATCGCTGTGAGTTTTTACGGCTTTTCTTAATCTTGATGGGTTATGCTCGCGTGTTGGTTCTTTTATGATTTATCTACTGTTATTTTGTTGTTGGATTCAATTTGTAGAACGTCTTGTTTAGTTTTTATTGGATTTTAGGGTTCCGTTTGATGCGATTAAGATGGATCGAAGCGCGTGTTTTTAGACGTTATGTCAATTAATTTTCGATGGATGTGGAACGAGGTTATGTCTGTGGTAACGGTGGATATGAAGCGTCAAACCGCACTGCAGACACTTTCTGACATAAGGATCCTGTTCTCTTTCCTTTTTATATTTTGGAGATTTATGTATTCCATTGAAATATGAACTCGGTTACTAGTTTTGAAGTCAAGGTATTTCCTCTGATGAATGGGTGTTTTCTCTCTCCGAGGTTTGGAAATCCTTTGGAAGATGCAGGCCTTGTAATCTTTGGTCTGCTTAACGAACGCTACGCTCAATGTTTTGATGTCCATAAACTGTTTTTTTGTGGAATTAGCAACCCTGTGGATGACAACGCGTTCTTTTGA

mRNA sequence

ATGATCGAGGTCGTGCTCAACGATCGTCTAGGCAAGAAGGTCCGTGTGAAGTGCAACGAGGATGATACGATTGGAGACTTGAAGAAGCTTGTCGCCGCTCAGACCGGAACCCGGACTGAGAAAATCAGGATCCAGAAGTGTTTTGAAGTCAAGGTATTTCCTCTGATGAATGGGTGTTTTCTCTCTCCGAGGTTTGGAAATCCTTTGGAAGATGCAGGCCTTGTAATCTTTGGTCTGCTTAACGAACGCTACGCTCAATGTTTTGATGTCCATAAACTGTTTTTTTGTGGAATTAGCAACCCTGTGGATGACAACGCGTTCTTTTGA

Coding sequence (CDS)

ATGATCGAGGTCGTGCTCAACGATCGTCTAGGCAAGAAGGTCCGTGTGAAGTGCAACGAGGATGATACGATTGGAGACTTGAAGAAGCTTGTCGCCGCTCAGACCGGAACCCGGACTGAGAAAATCAGGATCCAGAAGTGTTTTGAAGTCAAGGTATTTCCTCTGATGAATGGGTGTTTTCTCTCTCCGAGGTTTGGAAATCCTTTGGAAGATGCAGGCCTTGTAATCTTTGGTCTGCTTAACGAACGCTACGCTCAATGTTTTGATGTCCATAAACTGTTTTTTTGTGGAATTAGCAACCCTGTGGATGACAACGCGTTCTTTTGA

Protein sequence

MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKCFEVKVFPLMNGCFLSPRFGNPLEDAGLVIFGLLNERYAQCFDVHKLFFCGISNPVDDNAFF

Homology

[Close]

BLAST of CsaV3_1G014010 vs. NCBI nr
Match: KGN64842.1 (hypothetical protein Csa_1G126040 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 3.7e-18
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 65  FGNPLEDAGLVIFGLLNERYAQCFDVHKLFFCGISNPVDDNAFF 109
           FGNPLEDAGLVIFGLLNERYAQCFDVHKLFFCGISNPVDDNAFF
Sbjct: 29  FGNPLEDAGLVIFGLLNERYAQCFDVHKLFFCGISNPVDDNAFF 72

[Close]

BLAST of CsaV3_1G014010 vs. NCBI nr
Match: XP_004139444.1 (PREDICTED: ubiquitin-like protein 5 [Cucumis sativus] >XP_004139445.1 PREDICTED: ubiquitin-like protein 5 [Cucumis sativus] >XP_011653994.1 PREDICTED: ubiquitin-like protein 5 [Cucumis sativus] >KGN64843.1 hypothetical protein Csa_1G126050 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 3.4e-16
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKCFEV 51
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQK + +
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNI 50

[Close]

BLAST of CsaV3_1G014010 vs. NCBI nr
Match: KHG24331.1 (Ubiquitin-like protein 5 [Gossypium arboreum])

HSP 1 Score: 92.8 bits (229), Expect = 7.6e-16
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKCFE 50
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR +KIRIQK FE
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWFE 49

[Close]

BLAST of CsaV3_1G014010 vs. NCBI nr
Match: XP_002863802.1 (ubiquitin-like protein 5 [Arabidopsis lyrata subsp. lyrata] >XP_006281412.1 ubiquitin-like protein 5 [Capsella rubella] >XP_008462656.1 PREDICTED: ubiquitin-like protein 5 [Cucumis melo] >XP_008462662.1 PREDICTED: ubiquitin-like protein 5 [Cucumis melo] >XP_008462668.1 PREDICTED: ubiquitin-like protein 5 [Cucumis melo] >XP_008456484.1 PREDICTED: ubiquitin-like protein 5 [Cucumis melo] >XP_009108927.1 PREDICTED: ubiquitin-like protein 5 [Brassica rapa] >XP_013618092.1 PREDICTED: ubiquitin-like protein 5 [Brassica oleracea var. oleracea] >XP_013751522.1 ubiquitin-like protein 5 [Brassica napus] >XP_013729902.1 ubiquitin-like protein 5 [Brassica napus] >XP_016902862.1 PREDICTED: ubiquitin-like protein 5 [Cucumis melo] >XP_016902865.1 PREDICTED: ubiquitin-like protein 5 [Cucumis melo] >XP_016902868.1 PREDICTED: ubiquitin-like protein 5 [Cucumis melo] >XP_016902869.1 PREDICTED: ubiquitin-like protein 5 [Cucumis melo] >XP_018434387.1 PREDICTED: ubiquitin-like protein 5 [Raphanus sativus] >XP_019088200.1 PREDICTED: ubiquitin-like protein 5 [Camelina sativa] >XP_019095922.1 PREDICTED: ubiquitin-like protein 5 [Camelina sativa] >XP_019097853.1 PREDICTED: ubiquitin-like protein 5 [Camelina sativa] >XP_019579052.1 PREDICTED: ubiquitin-like protein 5 [Rhinolophus sinicus] >XP_022134421.1 ubiquitin-like protein 5 [Momordica charantia] >XP_022134422.1 ubiquitin-like protein 5 [Momordica charantia] >XP_022152891.1 ubiquitin-like protein 5 [Momordica charantia] >XP_022152892.1 ubiquitin-like protein 5 [Momordica charantia] >XP_022152893.1 ubiquitin-like protein 5 [Momordica charantia] >XP_022937457.1 ubiquitin-like protein 5 [Cucurbita moschata] >XP_022937458.1 ubiquitin-like protein 5 [Cucurbita moschata] >XP_022939919.1 ubiquitin-like protein 5 [Cucurbita moschata] >XP_022939920.1 ubiquitin-like protein 5 [Cucurbita moschata] >XP_022993515.1 ubiquitin-like protein 5 [Cucurbita maxima] >XP_022993517.1 ubiquitin-like protein 5 [Cucurbita maxima] >XP_022969698.1 ubiquitin-like protein 5 [Cucurbita maxima] >XP_022969699.1 ubiquitin-like protein 5 [Cucurbita maxima] >XP_023537479.1 ubiquitin-like protein 5 [Cucurbita pepo subsp. pepo] >XP_023537480.1 ubiquitin-like protein 5 [Cucurbita pepo subsp. pepo] >XP_023537481.1 ubiquitin-like protein 5 [Cucurbita pepo subsp. pepo] >XP_023549555.1 ubiquitin-like protein 5 [Cucurbita pepo subsp. pepo] >XP_023549556.1 ubiquitin-like protein 5 [Cucurbita pepo subsp. pepo] >EFH40061.1 ubiquitin family protein [Arabidopsis lyrata subsp. lyrata] >EOA14310.1 hypothetical protein CARUB_v10027479mg [Capsella rubella] >CDY46327.1 BnaC01g31610D [Brassica napus] >CDY34256.1 BnaA01g24730D [Brassica napus])

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKCFEV 51
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQK + +
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNI 50

[Close]

BLAST of CsaV3_1G014010 vs. NCBI nr
Match: XP_021836868.1 (ubiquitin-like protein 5 [Spinacia oleracea] >KNA15100.1 hypothetical protein SOVF_101260 [Spinacia oleracea])

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKCFEV 51
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR+EKIRIQK + +
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRSEKIRIQKWYTI 50

[Close]

BLAST of CsaV3_1G014010 vs. TAIR10
Match: AT5G42300.1 (ubiquitin-like protein 5)

HSP 1 Score: 90.9 bits (224), Expect = 5.3e-19
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKCFEV 51
          MIEVVLNDRLGKKVRVKCN+DDTIGDLKKLVAAQTGTR EKIRIQK + +
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNI 50

[Close]

BLAST of CsaV3_1G014010 vs. TAIR10
Match: AT3G45180.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 90.1 bits (222), Expect = 9.0e-19
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKCFEV 51
          MIEVVLNDRLGKKVRVKCNE+DTIGDLKKLVAAQTGTR EKIRIQK + +
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEEDTIGDLKKLVAAQTGTRPEKIRIQKWYNI 50

[Close]

BLAST of CsaV3_1G014010 vs. Swiss-Prot
Match: sp|Q9FGZ9|UBL5_ARATH (Ubiquitin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=UBL5 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 9.5e-18
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKCFEV 51
          MIEVVLNDRLGKKVRVKCN+DDTIGDLKKLVAAQTGTR EKIRIQK + +
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNI 50

[Close]

BLAST of CsaV3_1G014010 vs. Swiss-Prot
Match: sp|Q7SXF2|UBL5_DANRE (Ubiquitin-like protein 5 OS=Danio rerio OX=7955 GN=ubl5 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-14
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKCFEV 51
          MIEVV NDRLGKKVRVKCN++DTIGDLKKL+AAQTGTR EKI ++K + +
Sbjct: 1  MIEVVCNDRLGKKVRVKCNQEDTIGDLKKLIAAQTGTRWEKIVLKKWYTI 50

[Close]

BLAST of CsaV3_1G014010 vs. Swiss-Prot
Match: sp|Q3T0Z3|UBL5_BOVIN (Ubiquitin-like protein 5 OS=Bos taurus OX=9913 GN=UBL5 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.7e-14
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKCFEV 51
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++K + +
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTI 50

[Close]

BLAST of CsaV3_1G014010 vs. Swiss-Prot
Match: sp|Q9BZL1|UBL5_HUMAN (Ubiquitin-like protein 5 OS=Homo sapiens OX=9606 GN=UBL5 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.7e-14
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKCFEV 51
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++K + +
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTI 50

[Close]

BLAST of CsaV3_1G014010 vs. Swiss-Prot
Match: sp|Q6EGX7|UBL5_MESAU (Ubiquitin-like protein 5 OS=Mesocricetus auratus OX=10036 GN=UBL5 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.7e-14
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKCFEV 51
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++K + +
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTI 50

[Close]

BLAST of CsaV3_1G014010 vs. TrEMBL
Match: tr|A0A0A0LVI3|A0A0A0LVI3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126040 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.4e-18
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 65  FGNPLEDAGLVIFGLLNERYAQCFDVHKLFFCGISNPVDDNAFF 109
           FGNPLEDAGLVIFGLLNERYAQCFDVHKLFFCGISNPVDDNAFF
Sbjct: 29  FGNPLEDAGLVIFGLLNERYAQCFDVHKLFFCGISNPVDDNAFF 72

[Close]

BLAST of CsaV3_1G014010 vs. TrEMBL
Match: tr|A0A0A0LSS0|A0A0A0LSS0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126050 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.3e-16
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKCFEV 51
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQK + +
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKWYNI 50

[Close]

BLAST of CsaV3_1G014010 vs. TrEMBL
Match: tr|A0A0B0PLQ5|A0A0B0PLQ5_GOSAR (Ubiquitin-like protein 5 OS=Gossypium arboreum OX=29729 GN=F383_04851 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.1e-16
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKCFE 50
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR +KIRIQK FE
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWFE 49

[Close]

BLAST of CsaV3_1G014010 vs. TrEMBL
Match: tr|A0A078H902|A0A078H902_BRANA (BnaA01g24730D protein OS=Brassica napus OX=3708 GN=BnaA01g24730D PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.6e-16
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKCFEV 51
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQK + +
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNI 50

[Close]

BLAST of CsaV3_1G014010 vs. TrEMBL
Match: tr|Q6K220|Q6K220_ORYSJ (Os02g0628800 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0628800 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.6e-16
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRTEKIRIQKCFEV 51
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTR EKIRIQK + +
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNI 50

The following BLAST results are available for this feature:

BLAST of CsaV3_1G014010 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64842.1	3.7e-18	100.00	hypothetical protein Csa_1G126040 [Cucumis sativus]	[more]
XP_004139444.1	3.4e-16	92.00	PREDICTED: ubiquitin-like protein 5 [Cucumis sativus] >XP_004139445.1 PREDICTED:...	[more]
KHG24331.1	7.6e-16	93.88	Ubiquitin-like protein 5 [Gossypium arboreum]	[more]
XP_002863802.1	1.3e-15	90.00	ubiquitin-like protein 5 [Arabidopsis lyrata subsp. lyrata] >XP_006281412.1 ubiq...	[more]
XP_021836868.1	1.3e-15	90.00	ubiquitin-like protein 5 [Spinacia oleracea] >KNA15100.1 hypothetical protein SO...	[more]

BLAST of CsaV3_1G014010 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42300.1	5.3e-19	88.00	ubiquitin-like protein 5	[more]
AT3G45180.1	9.0e-19	88.00	Ubiquitin-like superfamily protein	[more]

BLAST of CsaV3_1G014010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FGZ9\|UBL5_ARATH	9.5e-18	88.00	Ubiquitin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=UBL5 PE=3 SV=1	[more]
sp\|Q7SXF2\|UBL5_DANRE	1.3e-14	76.00	Ubiquitin-like protein 5 OS=Danio rerio OX=7955 GN=ubl5 PE=3 SV=1	[more]
sp\|Q3T0Z3\|UBL5_BOVIN	3.7e-14	76.00	Ubiquitin-like protein 5 OS=Bos taurus OX=9913 GN=UBL5 PE=3 SV=1	[more]
sp\|Q9BZL1\|UBL5_HUMAN	3.7e-14	76.00	Ubiquitin-like protein 5 OS=Homo sapiens OX=9606 GN=UBL5 PE=1 SV=1	[more]
sp\|Q6EGX7\|UBL5_MESAU	3.7e-14	76.00	Ubiquitin-like protein 5 OS=Mesocricetus auratus OX=10036 GN=UBL5 PE=3 SV=1	[more]

BLAST of CsaV3_1G014010 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LVI3\|A0A0A0LVI3_CUCSA	2.4e-18	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126040 PE=4 SV=1	[more]
tr\|A0A0A0LSS0\|A0A0A0LSS0_CUCSA	2.3e-16	92.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126050 PE=4 SV=1	[more]
tr\|A0A0B0PLQ5\|A0A0B0PLQ5_GOSAR	5.1e-16	93.88	Ubiquitin-like protein 5 OS=Gossypium arboreum OX=29729 GN=F383_04851 PE=4 SV=1	[more]
tr\|A0A078H902\|A0A078H902_BRANA	8.6e-16	90.00	BnaA01g24730D protein OS=Brassica napus OX=3708 GN=BnaA01g24730D PE=4 SV=1	[more]
tr\|Q6K220\|Q6K220_ORYSJ	8.6e-16	90.00	Os02g0628800 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0628800 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR029071	Ubiquitin-like_domsf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0031386	protein tag

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G014010.1	CsaV3_1G014010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 1..53 e-value: 4.3E-14 score: 54.1
None	No IPR available	PANTHER	PTHR13042	FAMILY NOT NAMED	coord: 1..50
None	No IPR available	PANTHER	PTHR13042:SF4	SUBFAMILY NOT NAMED	coord: 1..50
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	SSF54236	Ubiquitin-like	coord: 1..45

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G014010	CSPI01G13810	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G014010	Cucsa.206810	Cucumber (Gy14) v1	cgycucB331
CsaV3_1G014010	CmaCh12G008230	Cucurbita maxima (Rimu)	cmacucB0188
CsaV3_1G014010	CmoCh12G008300	Cucurbita moschata (Rifu)	cmocucB0172
CsaV3_1G014010	Cp4.1LG07g06670	Cucurbita pepo (Zucchini)	cpecucB0996
CsaV3_1G014010	CsGy1G013830	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G014010	Cla003422	Watermelon (97103) v1	cucwmB060
CsaV3_1G014010	MELO3C004892	Melon (DHL92) v3.5.1	cucmeB010
CsaV3_1G014010	ClCG01G013620	Watermelon (Charleston Gray)	cucwcgB016
CsaV3_1G014010	Lsi03G000430	Bottle gourd (USVL1VR-Ls)	cuclsiB048
CsaV3_1G014010	MELO3C035361.2	Melon (DHL92) v3.6.1	cucmedB009
CsaV3_1G014010	Cla97C01G012650	Watermelon (97103) v2	cucwmbB002
CsaV3_1G014010	Bhi04G001098	Wax gourd	cucwgoB017
CsaV3_1G014010	Bhi08G000158	Wax gourd	cucwgoB051

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G014010	Silver-seed gourd	carcucB0192
CsaV3_1G014010	Silver-seed gourd	carcucB0363
CsaV3_1G014010	Cucurbita maxima (Rimu)	cmacucB0234
CsaV3_1G014010	Cucurbita moschata (Rifu)	cmocucB0221
CsaV3_1G014010	Cucurbita pepo (Zucchini)	cpecucB0635