CmoCh12G008300 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G008300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ubiquitin family protein
Location	Cmo_Chr12 : 7535650 .. 7535871 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAGGTGGTTCTCAACGATCGTCTAGGGAAGAAGGTCCGGGTGAAGTGCAACGAGGACGACACGATCGGCGACTTGAAGAAGCTCGTTGCCGCTCAGACCGGAACCAGGGCCGAGAAGATCAGGATCCAGAAGTGGTACAATATCTACAAGGATCACATCACCCTCAAGGATTACGAGATCCATGATGGCATGGGTCTCGAGCTCTATTACAACTGA

mRNA sequence

ATGATTGAGGTGGTTCTCAACGATCGTCTAGGGAAGAAGGTCCGGGTGAAGTGCAACGAGGACGACACGATCGGCGACTTGAAGAAGCTCGTTGCCGCTCAGACCGGAACCAGGGCCGAGAAGATCAGGATCCAGAAGTGGTACAATATCTACAAGGATCACATCACCCTCAAGGATTACGAGATCCATGATGGCATGGGTCTCGAGCTCTATTACAACTGA

Coding sequence (CDS)

ATGATTGAGGTGGTTCTCAACGATCGTCTAGGGAAGAAGGTCCGGGTGAAGTGCAACGAGGACGACACGATCGGCGACTTGAAGAAGCTCGTTGCCGCTCAGACCGGAACCAGGGCCGAGAAGATCAGGATCCAGAAGTGGTACAATATCTACAAGGATCACATCACCCTCAAGGATTACGAGATCCATGATGGCATGGGTCTCGAGCTCTATTACAACTGA

Homology

[Close]

BLAST of CmoCh12G008300 vs. Swiss-Prot
Match: UBL5_ARATH (Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.9e-36
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCN+DDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of CmoCh12G008300 vs. Swiss-Prot
Match: UBL5_PSAOB (Ubiquitin-like protein 5 OS=Psammomys obesus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.9e-28
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EIHDGMGLELYY 73
          EIHDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72

[Close]

BLAST of CmoCh12G008300 vs. Swiss-Prot
Match: UBL5_MOUSE (Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.9e-28
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EIHDGMGLELYY 73
          EIHDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72

[Close]

BLAST of CmoCh12G008300 vs. Swiss-Prot
Match: UBL5_MESAU (Ubiquitin-like protein 5 OS=Mesocricetus auratus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.9e-28
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EIHDGMGLELYY 73
          EIHDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72

[Close]

BLAST of CmoCh12G008300 vs. Swiss-Prot
Match: UBL5_BOVIN (Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.9e-28
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVV NDRLGKKVRVKCN DDTIGDLKKL+AAQTGTR  KI ++KWY I+KDH++L DY
Sbjct: 1  MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY 60

Query: 61 EIHDGMGLELYY 73
          EIHDGM LELYY
Sbjct: 61 EIHDGMNLELYY 72

[Close]

BLAST of CmoCh12G008300 vs. TrEMBL
Match: R0GPM9_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10027479mg PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.0e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of CmoCh12G008300 vs. TrEMBL
Match: A0A078H902_BRANA (BnaA01g24730D protein OS=Brassica napus GN=BnaA01g24730D PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.0e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of CmoCh12G008300 vs. TrEMBL
Match: A0A0D3ABK7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=UBL5 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.0e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of CmoCh12G008300 vs. TrEMBL
Match: M4E4Y0_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.0e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of CmoCh12G008300 vs. TrEMBL
Match: D7MTG3_ARALL (Ubiquitin family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_917558 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.0e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of CmoCh12G008300 vs. TAIR10
Match: AT5G42300.1 (AT5G42300.1 ubiquitin-like protein 5)

HSP 1 Score: 151.4 bits (381), Expect = 2.2e-37
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCN+DDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of CmoCh12G008300 vs. TAIR10
Match: AT3G45180.1 (AT3G45180.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 146.7 bits (369), Expect = 5.4e-36
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNE+DTIGDLKKLVAAQTGTR EKIRIQKWYNIYKDHI LKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEEDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHIPLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of CmoCh12G008300 vs. NCBI nr
Match: gi|297791835|ref|XP_002863802.1| (ubiquitin family protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 152.5 bits (384), Expect = 2.8e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of CmoCh12G008300 vs. NCBI nr
Match: gi|629085023|gb|KCW51380.1| (hypothetical protein EUGRSUZ_J00924, partial [Eucalyptus grandis])

HSP 1 Score: 151.4 bits (381), Expect = 6.2e-34
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1   MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
           MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRA+KIRIQKWYNIYKDHITLKDY
Sbjct: 61  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDY 120

Query: 61  EIHDGMGLELYYN 74
           EIHDGMGLELYYN
Sbjct: 121 EIHDGMGLELYYN 133

[Close]

BLAST of CmoCh12G008300 vs. NCBI nr
Match: gi|595839341|ref|XP_007207822.1| (hypothetical protein PRUPE_ppa023849mg [Prunus persica])

HSP 1 Score: 151.4 bits (381), Expect = 6.2e-34
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1   MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
           MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRA+KIRIQKWYNIYKDHITLKDY
Sbjct: 36  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDY 95

Query: 61  EIHDGMGLELYYN 74
           EIHDGMGLELYYN
Sbjct: 96  EIHDGMGLELYYN 108

[Close]

BLAST of CmoCh12G008300 vs. NCBI nr
Match: gi|15238924|ref|NP_199045.1| (ubiquitin-like protein 5 [Arabidopsis thaliana])

HSP 1 Score: 151.4 bits (381), Expect = 6.2e-34
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCN+DDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

[Close]

BLAST of CmoCh12G008300 vs. NCBI nr
Match: gi|586677035|ref|XP_006838813.1| (PREDICTED: ubiquitin-like protein 5 [Amborella trichopoda])

HSP 1 Score: 151.4 bits (381), Expect = 6.2e-34
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDY 60
          MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRA+KIRIQKWYNIYKDHITLKDY
Sbjct: 1  MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDY 60

Query: 61 EIHDGMGLELYYN 74
          EIHDGMGLELYYN
Sbjct: 61 EIHDGMGLELYYN 73

The following BLAST results are available for this feature:

BLAST of CmoCh12G008300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UBL5_ARATH	3.9e-36	98.63	Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=3 SV=1	[more]
UBL5_PSAOB	3.9e-28	80.56	Ubiquitin-like protein 5 OS=Psammomys obesus GN=UBL5 PE=3 SV=1	[more]
UBL5_MOUSE	3.9e-28	80.56	Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 PE=1 SV=1	[more]
UBL5_MESAU	3.9e-28	80.56	Ubiquitin-like protein 5 OS=Mesocricetus auratus GN=UBL5 PE=3 SV=1	[more]
UBL5_BOVIN	3.9e-28	80.56	Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=3 SV=1	[more]

BLAST of CmoCh12G008300 vs. TrEMBL


Match Name	E-value	Identity	Description
R0GPM9_9BRAS	2.0e-34	100.00	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10027479mg PE=4 SV=1	[more]
A0A078H902_BRANA	2.0e-34	100.00	BnaA01g24730D protein OS=Brassica napus GN=BnaA01g24730D PE=4 SV=1	[more]
A0A0D3ABK7_BRAOL	2.0e-34	100.00	Uncharacterized protein OS=Brassica oleracea var. oleracea GN=UBL5 PE=4 SV=1	[more]
M4E4Y0_BRARP	2.0e-34	100.00	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
D7MTG3_ARALL	2.0e-34	100.00	Ubiquitin family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_91755...	[more]

BLAST of CmoCh12G008300 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42300.1	2.2e-37	98.63	ubiquitin-like protein 5	[more]
AT3G45180.1	5.4e-36	95.89	Ubiquitin-like superfamily protein	[more]

BLAST of CmoCh12G008300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|297791835\|ref\|XP_002863802.1\|	2.8e-34	100.00	ubiquitin family protein [Arabidopsis lyrata subsp. lyrata]	[more]
gi\|629085023\|gb\|KCW51380.1\|	6.2e-34	98.63	hypothetical protein EUGRSUZ_J00924, partial [Eucalyptus grandis]	[more]
gi\|595839341\|ref\|XP_007207822.1\|	6.2e-34	98.63	hypothetical protein PRUPE_ppa023849mg [Prunus persica]	[more]
gi\|15238924\|ref\|NP_199045.1\|	6.2e-34	98.63	ubiquitin-like protein 5 [Arabidopsis thaliana]	[more]
gi\|586677035\|ref\|XP_006838813.1\|	6.2e-34	98.63	PREDICTED: ubiquitin-like protein 5 [Amborella trichopoda]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0031386	protein tag

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G008300.1	CmoCh12G008300.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G008300	CmaCh12G008230	Cucurbita maxima (Rimu)	cmacmoB177
CmoCh12G008300	Cla003422	Watermelon (97103) v1	cmowmB151
CmoCh12G008300	MELO3C004892	Melon (DHL92) v3.5.1	cmomeB138
CmoCh12G008300	ClCG01G013620	Watermelon (Charleston Gray)	cmowcgB142
CmoCh12G008300	CSPI01G13810	Wild cucumber (PI 183967)	cmocpiB148
CmoCh12G008300	Lsi03G000430	Bottle gourd (USVL1VR-Ls)	cmolsiB158
CmoCh12G008300	Cp4.1LG07g06670	Cucurbita pepo (Zucchini)	cmocpeB179
CmoCh12G008300	CsaV3_1G014010	Cucumber (Chinese Long) v3	cmocucB0172
CmoCh12G008300	Cla97C01G012650	Watermelon (97103) v2	cmowmbB149
CmoCh12G008300	Bhi08G000158	Wax gourd	cmowgoB0214
CmoCh12G008300	CsGy1G013830	Cucumber (Gy14) v2	cgybcmoB054

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G008300	Cucurbita pepo (Zucchini)	cmocpeB175