CsaV3_1G013200 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G013200
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 8519444 .. 8522686 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATTATTTTCGCTATGGGCCTTAGAGGGATTCATTCAACCCTGATTTCATACTCAGTTCAACTATCATTCCCATTCCAAATGAAAGCAAAGCGTCTACCTCCGATTGCAGTCTAAAAGTACGATCTTGATGAAGCTCATTGCGTATCGTCGATGGCTGAGAACTCCCAATGTAGACGGAAGTAGATTCAGAAAGTTTTGTACACGGCGGAGGAACCTCGAACTGGACAATGAAAATGATTCGCATTTCGTTTATGTGCTTGAGCAAATAGTAAGAGGAAATCAGAGCTGGAAGATTGCCTTCAACAACTCATCGATTTCAGGTAATATAGAGCCCCATCACGTAGAAAAGGTTTTGATTCGAACTCTTGATGACTCCCGGTTGGCTTTGAGATTCTTCAATTTCTTGGGACTTCATAGAAATTTCCACCACTCCACTGCGTCATTTTGTATTTTAATTCATTCCCTCCTTCAGAACAATTTGTTTTGGCCTGCATCTTCGCTTTTGCAAACCCTTTTGCTCCGTGGTCTAAACCCACATCAGATTTTTGAGAATTTTTTTGAATCTTATAAGAAGTACAAATTTTCTTCGAGTTCAGGTTTTGATATGTTGATTCAGCATTATGTACAGAACAAGAGAGTAATGGATGGCGTTTTGGTTGTAAATCTCATGAGAGATTATGGGTTATTGCCTGAAGTTAGAACTTTAAGTGCTCTGTTAAATGCCCTAGCACGAATTAGGAAATTTCGTCAGGTATTGGAATTATTTGATACCCTTGTGAATGCAGGTGTTAAGCCCGATTGTTATATTTACACGGTAGTGGTTAAATGCTTGTGTGAATTGAAGGATTTTAACAAGGCCAAGGAAATAATTAATCAGGCTGAGGGAAATGGATGTAGTTTGAGTATTGTAACATATAACGTGTTTATCAATGGTCTCTGCAAGAGCAAGAGAGTTTGGGAGGCTGTTGAGGTCAAGAGATCGCTAGGTGAAAAGGGATTGAAAGCAGATTTAGTTACGTATTGCACGCTAGTGTTGGGATTGTGCAGAATCCAGGAGTTTGAAGTTGGGATGGAGATGATGGACGAAATGATTGAGCTGGGTTATGTTCCGAGCGAAGCTGCTGTTTCGGGACTCATAGAGGGGTTGATCAAAATGGGGAGTATTGAAGGTGCTTTTGAGTTGCTAAACAAAGTTGGGAAACTTGGAGTAGTGCCTAACCTATTTGTTTATAATTCAATGATCAATTCATTGTGCAAAACTGGGAAATTGGAAGAAGCCGAGTTGCTTTTTAGTGTAATGGCTGAAAGGGGTTTGAATCCAAATGATGTCACTTATACGATCTTGATTGATGGATTTGGAAGAAGGGCCAAACTGGATGTTGCGTTCTATTATTTCAATAAAATGATAGAGTGTGGCATAAGTGCAACTGTGTATTCGTACAATTCTATGATAAATTGTCAATGCAAGTTTGGGAAAATGAAAATGGCGGAGCTTCTCTTCAAGGAGATGGTCGACAAAGGATTGAAACCAACAGTGGCAACTTATACTTCATTGATTAGTGGATATTGCAAAGATGGGTTAGTGCCAAAAGCATTCAAGTTATATCATGAAATGACTGGAAAAGGCATTGCTCCAAATACTGTCACCTTTACTGCTCTTATTTGCGGTCTGTGCCAAATTAATAAAATGGCTGAGGCCAGTAAATTATTTGATGAAATGGTTGAACTGAAAATTCTTCCAAATGAGGTAACTTATAATGTTTTAATTGAGGGGCACTGTAGGGAAGGTAACACCACAAGAGCTTTTGAATTGCTGGATGAAATGATTAAGAAGGGCCTTTCACCCGACACATACACCTATAGGCCCCTAATTGCTGGTCTTTGTTCTACTGGTAGAGTTTCTGAAGCAAAGGAGTTCATTAACGACCTTCACCACAAGCATCAAAGGTTGGATGAGTTGTGTTATACTGCACTTCTGCAGGGTTTCTGCAAGGAAGGAAGAATTAAGGAAGCTTTAGTTGCTCGCCAAGAAATGGTAGGACGTGGACTGCAGATGGATCTAGTAAGTTATGCTGTGCTTATCAGTGGAGCTCTGAATCAGAATGATAGAATATTGTTTGAACTTCTAAGGGAAATGCATGGTAAAGGAATGCAACCGGATAATGTAATATACACCATTTTGATTGATGGGTTCATTAAATCAGGAAATCTCAAAAAGGCATTTGAATTTTGGTACATTATGATTGGTGAAGGATATGTTCCCAATAGTGTGACGTACACGGCATTGGTGAATGGATTATTCAAGGCAGGATATGTGAATGAAGCCAAACTGCTTTTCAAGCGTATGCTGGTTGGTGAGGCCATTCCCAATCATATAACTTATGGTTGTTTTTTGGATCACCTCACGAAAGAAGGAAACATGGAGAATGCTCTACAACTACACAATGCAATGCTCCAAGGGAGTTTTGCAAATACTGTCACCTATAATATACTTATCCGGGGTTATTGCCAGATAGGAAAATTTCAAGAGGCAGCCAAGCTTCTCGATGTAATGATTGGAATTGGTATGGTCCCAGATTGCATTACATATTCGACATTTATCTATGAATATTGTAAGAGGGGCAATGTGGATGCAGCTATGGACATGTGGGAGTGTATGTTGCAAAGAGGCTTGAAGCCTGATAGAGTAGTATTTAACTTTCTAATACATGCCTGTTGTCTCAATGGTGAACTGGACCGAGCTCTGCAGTTGCGCAATGACATGATGTTAAGGGGTTTGAAACCAACTCAATCGACCTATCATTCCCTGATGGTGCAACTTGCTCAACGAGCTAGGTTGACACAAGTTCAGTAGTTGATGAATTAATGACAATGCTTGAAGAAAACCACGCAGCGGACTTTTAATATCTACAGTTGCAAAGACTGGAGGCTCAACATTGTAGTTAATAATACCCCATGTAAAATAGAAGCAAAAATGATTGTTGTGCATTAGTGATAGATGATGAGCAAAACAAGGCGTACAAACTAACACAACTTTTGTACACAACATTAAATGCAAAGTGTTTAGGCTAGGCTGTCGTTAAATTGATTCATTTATAAAAGTTTACAATAAGGTGGGTGATTTCAAATGAAAAAAAAGGTTATAAATTGATACAGTTACCAGTGTAGAGTTAAAAATTTATTTAATTATTAGTTCAATTTTAAATTAATACAACCCCAAAAGTCTAAGAGTGTATAAAGG

mRNA sequence

ATGAAGCTCATTGCGTATCGTCGATGGCTGAGAACTCCCAATGTAGACGGAAGTAGATTCAGAAAGTTTTGTACACGGCGGAGGAACCTCGAACTGGACAATGAAAATGATTCGCATTTCGTTTATGTGCTTGAGCAAATAGTAAGAGGAAATCAGAGCTGGAAGATTGCCTTCAACAACTCATCGATTTCAGGTGTTAAGCCCGATTGTTATATTTACACGGTAGTGGTTAAATGCTTGTGTGAATTGAAGGATTTTAACAAGGCCAAGGAAATAATTAATCAGGCTGAGGGAAATGGATGTAGTTTGAGTATTGTAACATATAACGTGTTTATCAATGGTCTCTGCAAGAGCAAGAGAGTTTGGGAGGCTGTTGAGGTCAAGAGATCGCTAGGTGAAAAGGGATTGAAAGCAGATTTAGTTACGTATTGCACGCTAGTGTTGGGATTGTGCAGAATCCAGGAGTTTGAAGTTGGGATGGAGATGATGGACGAAATGATTGAGCTGGGTTATGTTCCGAGCGAAGCTGCTGTTTCGGGACTCATAGAGGGGTTGATCAAAATGGGGAGTATTGAAGGTGCTTTTGAGTTGCTAAACAAAGTTGGGAAACTTGGAGTAGTGCCTAACCTATTTGTTTATAATTCAATGATCAATTCATTGTGCAAAACTGGGAAATTGGAAGAAGCCGAGTTGCTTTTTAGTGTAATGGCTGAAAGGGGTTTGAATCCAAATGATGTCACTTATACGATCTTGATTGATGGATTTGGAAGAAGGGCCAAACTGGATGTTGCGTTCTATTATTTCAATAAAATGATAGAGTGTGGCATAAGTGCAACTGTGTATTCGTACAATTCTATGATAAATTGTCAATGCAAGTTTGGGAAAATGAAAATGGCGGAGCTTCTCTTCAAGGAGATGGTCGACAAAGGATTGAAACCAACAGTGGCAACTTATACTTCATTGATTAGTGGATATTGCAAAGATGGGTTAGTGCCAAAAGCATTCAAGTTATATCATGAAATGACTGGAAAAGGCATTGCTCCAAATACTGTCACCTTTACTGCTCTTATTTGCGGTCTGTGCCAAATTAATAAAATGGCTGAGGCCAGTAAATTATTTGATGAAATGGTTGAACTGAAAATTCTTCCAAATGAGGTAACTTATAATGTTTTAATTGAGGGGCACTGTAGGGAAGGTAACACCACAAGAGCTTTTGAATTGCTGGATGAAATGATTAAGAAGGGCCTTTCACCCGACACATACACCTATAGGCCCCTAATTGCTGGTCTTTGTTCTACTGGTAGAGTTTCTGAAGCAAAGGAGTTCATTAACGACCTTCACCACAAGCATCAAAGGTTGGATGAGTTGTGTTATACTGCACTTCTGCAGGGTTTCTGCAAGGAAGGAAGAATTAAGGAAGCTTTAGTTGCTCGCCAAGAAATGGTAGGACGTGGACTGCAGATGGATCTAGTAAGTTATGCTGTGCTTATCAGTGGAGCTCTGAATCAGAATGATAGAATATTGTTTGAACTTCTAAGGGAAATGCATGGTAAAGGAATGCAACCGGATAATGTAATATACACCATTTTGATTGATGGGTTCATTAAATCAGGAAATCTCAAAAAGGCATTTGAATTTTGGTACATTATGATTGGTGAAGGATATGTTCCCAATAGTGTGACGTACACGGCATTGGTGAATGGATTATTCAAGGCAGGATATGTGAATGAAGCCAAACTGCTTTTCAAGCGTATGCTGGTTGGTGAGGCCATTCCCAATCATATAACTTATGGTTGTTTTTTGGATCACCTCACGAAAGAAGGAAACATGGAGAATGCTCTACAACTACACAATGCAATGCTCCAAGGGAGTTTTGCAAATACTGTCACCTATAATATACTTATCCGGGGTTATTGCCAGATAGGAAAATTTCAAGAGGCAGCCAAGCTTCTCGATGTAATGATTGGAATTGGTATGGTCCCAGATTGCATTACATATTCGACATTTATCTATGAATATTGTAAGAGGGGCAATGTGGATGCAGCTATGGACATGTGGGAGTGTATGTTGCAAAGAGGCTTGAAGCCTGATAGAGTAGTATTTAACTTTCTAATACATGCCTGTTGTCTCAATGGTGAACTGGACCGAGCTCTGCAGTTGCGCAATGACATGATGTTAAGGGGTTTGAAACCAACTCAATCGACCTATCATTCCCTGATGGTGCAACTTGCTCAACGAGCTAGGTTGACACAAGTTCAGTAG

Coding sequence (CDS)

ATGAAGCTCATTGCGTATCGTCGATGGCTGAGAACTCCCAATGTAGACGGAAGTAGATTCAGAAAGTTTTGTACACGGCGGAGGAACCTCGAACTGGACAATGAAAATGATTCGCATTTCGTTTATGTGCTTGAGCAAATAGTAAGAGGAAATCAGAGCTGGAAGATTGCCTTCAACAACTCATCGATTTCAGGTGTTAAGCCCGATTGTTATATTTACACGGTAGTGGTTAAATGCTTGTGTGAATTGAAGGATTTTAACAAGGCCAAGGAAATAATTAATCAGGCTGAGGGAAATGGATGTAGTTTGAGTATTGTAACATATAACGTGTTTATCAATGGTCTCTGCAAGAGCAAGAGAGTTTGGGAGGCTGTTGAGGTCAAGAGATCGCTAGGTGAAAAGGGATTGAAAGCAGATTTAGTTACGTATTGCACGCTAGTGTTGGGATTGTGCAGAATCCAGGAGTTTGAAGTTGGGATGGAGATGATGGACGAAATGATTGAGCTGGGTTATGTTCCGAGCGAAGCTGCTGTTTCGGGACTCATAGAGGGGTTGATCAAAATGGGGAGTATTGAAGGTGCTTTTGAGTTGCTAAACAAAGTTGGGAAACTTGGAGTAGTGCCTAACCTATTTGTTTATAATTCAATGATCAATTCATTGTGCAAAACTGGGAAATTGGAAGAAGCCGAGTTGCTTTTTAGTGTAATGGCTGAAAGGGGTTTGAATCCAAATGATGTCACTTATACGATCTTGATTGATGGATTTGGAAGAAGGGCCAAACTGGATGTTGCGTTCTATTATTTCAATAAAATGATAGAGTGTGGCATAAGTGCAACTGTGTATTCGTACAATTCTATGATAAATTGTCAATGCAAGTTTGGGAAAATGAAAATGGCGGAGCTTCTCTTCAAGGAGATGGTCGACAAAGGATTGAAACCAACAGTGGCAACTTATACTTCATTGATTAGTGGATATTGCAAAGATGGGTTAGTGCCAAAAGCATTCAAGTTATATCATGAAATGACTGGAAAAGGCATTGCTCCAAATACTGTCACCTTTACTGCTCTTATTTGCGGTCTGTGCCAAATTAATAAAATGGCTGAGGCCAGTAAATTATTTGATGAAATGGTTGAACTGAAAATTCTTCCAAATGAGGTAACTTATAATGTTTTAATTGAGGGGCACTGTAGGGAAGGTAACACCACAAGAGCTTTTGAATTGCTGGATGAAATGATTAAGAAGGGCCTTTCACCCGACACATACACCTATAGGCCCCTAATTGCTGGTCTTTGTTCTACTGGTAGAGTTTCTGAAGCAAAGGAGTTCATTAACGACCTTCACCACAAGCATCAAAGGTTGGATGAGTTGTGTTATACTGCACTTCTGCAGGGTTTCTGCAAGGAAGGAAGAATTAAGGAAGCTTTAGTTGCTCGCCAAGAAATGGTAGGACGTGGACTGCAGATGGATCTAGTAAGTTATGCTGTGCTTATCAGTGGAGCTCTGAATCAGAATGATAGAATATTGTTTGAACTTCTAAGGGAAATGCATGGTAAAGGAATGCAACCGGATAATGTAATATACACCATTTTGATTGATGGGTTCATTAAATCAGGAAATCTCAAAAAGGCATTTGAATTTTGGTACATTATGATTGGTGAAGGATATGTTCCCAATAGTGTGACGTACACGGCATTGGTGAATGGATTATTCAAGGCAGGATATGTGAATGAAGCCAAACTGCTTTTCAAGCGTATGCTGGTTGGTGAGGCCATTCCCAATCATATAACTTATGGTTGTTTTTTGGATCACCTCACGAAAGAAGGAAACATGGAGAATGCTCTACAACTACACAATGCAATGCTCCAAGGGAGTTTTGCAAATACTGTCACCTATAATATACTTATCCGGGGTTATTGCCAGATAGGAAAATTTCAAGAGGCAGCCAAGCTTCTCGATGTAATGATTGGAATTGGTATGGTCCCAGATTGCATTACATATTCGACATTTATCTATGAATATTGTAAGAGGGGCAATGTGGATGCAGCTATGGACATGTGGGAGTGTATGTTGCAAAGAGGCTTGAAGCCTGATAGAGTAGTATTTAACTTTCTAATACATGCCTGTTGTCTCAATGGTGAACTGGACCGAGCTCTGCAGTTGCGCAATGACATGATGTTAAGGGGTTTGAAACCAACTCAATCGACCTATCATTCCCTGATGGTGCAACTTGCTCAACGAGCTAGGTTGACACAAGTTCAGTAG

Protein sequence

MKLIAYRRWLRTPNVDGSRFRKFCTRRRNLELDNENDSHFVYVLEQIVRGNQSWKIAFNNSSISGVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQNDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQLAQRARLTQVQ
Homology
[Close]
BLAST of CsaV3_1G013200 vs. NCBI nr
Match: XP_004147277.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucumis sativus] >KGN64772.1 hypothetical protein Csa_1G096070 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 4.9e-29
Identity = 67/80 (83.75%), Postives = 72/80 (90.00%), Query Frame = 0 

Query: 1  MKLIAYRRWLRTPNVDGSRFRKFCTRRRNLELDNENDSHFVYVLEQIVRGNQSWKIAFNN 60
          MKLIAYRRWLRTPNVDGSRFRKFCTRRRNLELDNENDSHFVYVLEQIVRGNQSWKIAFNN
Sbjct: 1  MKLIAYRRWLRTPNVDGSRFRKFCTRRRNLELDNENDSHFVYVLEQIVRGNQSWKIAFNN 60

Query: 61 SSISGVKPDCYIYTVVVKCL 81
          SSISG     ++  V+++ L
Sbjct: 61 SSISGNIEPHHVEKVLIRTL 80

[Close]
BLAST of CsaV3_1G013200 vs. NCBI nr
Match: XP_008463320.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-25
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 0 

Query: 1  MKLIAYRRWLRTPNVDGSRFRKFCTRRRNLELDNENDSHFVYVLEQIVRGNQSWKIAFNN 60
          MKL+ YRRWLRTPNVDG RFRKFCT RRNLE+DNEN+SHFVYVLEQIVRGNQSWKIAFNN
Sbjct: 1  MKLVGYRRWLRTPNVDGRRFRKFCTGRRNLEVDNENESHFVYVLEQIVRGNQSWKIAFNN 60

Query: 61 SSISG-VKPDCYIYTVVVKCL 81
          S ISG +KP  ++  V+++ L
Sbjct: 61 SLISGNIKPH-HVERVLIRTL 80

[Close]
BLAST of CsaV3_1G013200 vs. NCBI nr
Match: XP_023511929.1 (putative pentatricopeptide repeat-containing protein At5g59900 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-18
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0 

Query: 1  MKLIAYRRWLRTPNVDGSRFRKFCTRRRNLELDNENDSHFVYVLEQIVRGNQSWKIAFNN 60
          MKLI YRR LRTPNVDG RFRKFCT RRNLE +NENDS FVY +EQIVRG Q+W+IAFNN
Sbjct: 1  MKLIRYRRSLRTPNVDGRRFRKFCTWRRNLEENNENDSQFVYEIEQIVRGKQNWRIAFNN 60

Query: 61 SSIS-GVKP 69
          + IS  +KP
Sbjct: 61 ALISVNLKP 69

[Close]
BLAST of CsaV3_1G013200 vs. NCBI nr
Match: XP_022986767.1 (putative pentatricopeptide repeat-containing protein At5g59900 isoform X2 [Cucurbita maxima])

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-18
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0 

Query: 1  MKLIAYRRWLRTPNVDGSRFRKFCTRRRNLELDNENDSHFVYVLEQIVRGNQSWKIAFNN 60
          MK I YRR LRTPNVDG RFRKFCT RRNLE +NENDS FVY +EQIVRG Q+W+IAFNN
Sbjct: 1  MKFIRYRRSLRTPNVDGRRFRKFCTWRRNLEENNENDSQFVYEIEQIVRGKQNWRIAFNN 60

Query: 61 SSIS-GVKP 69
          + IS  +KP
Sbjct: 61 ALISVNLKP 69

[Close]
BLAST of CsaV3_1G013200 vs. NCBI nr
Match: XP_022986766.1 (putative pentatricopeptide repeat-containing protein At5g59900 isoform X1 [Cucurbita maxima])

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-18
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0 

Query: 1  MKLIAYRRWLRTPNVDGSRFRKFCTRRRNLELDNENDSHFVYVLEQIVRGNQSWKIAFNN 60
          MK I YRR LRTPNVDG RFRKFCT RRNLE +NENDS FVY +EQIVRG Q+W+IAFNN
Sbjct: 1  MKFIRYRRSLRTPNVDGRRFRKFCTWRRNLEENNENDSQFVYEIEQIVRGKQNWRIAFNN 60

Query: 61 SSIS-GVKP 69
          + IS  +KP
Sbjct: 61 ALISVNLKP 69

[Close]
BLAST of CsaV3_1G013200 vs. TrEMBL
Match: tr|A0A0A0LVC6|A0A0A0LVC6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G096070 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.3e-29
Identity = 67/80 (83.75%), Postives = 72/80 (90.00%), Query Frame = 0 

Query: 1  MKLIAYRRWLRTPNVDGSRFRKFCTRRRNLELDNENDSHFVYVLEQIVRGNQSWKIAFNN 60
          MKLIAYRRWLRTPNVDGSRFRKFCTRRRNLELDNENDSHFVYVLEQIVRGNQSWKIAFNN
Sbjct: 1  MKLIAYRRWLRTPNVDGSRFRKFCTRRRNLELDNENDSHFVYVLEQIVRGNQSWKIAFNN 60

Query: 61 SSISGVKPDCYIYTVVVKCL 81
          SSISG     ++  V+++ L
Sbjct: 61 SSISGNIEPHHVEKVLIRTL 80

[Close]
BLAST of CsaV3_1G013200 vs. TrEMBL
Match: tr|A0A1S3CIX5|A0A1S3CIX5_CUCME (putative pentatricopeptide repeat-containing protein At5g59900 OS=Cucumis melo OX=3656 GN=LOC103501502 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.5e-26
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 0 

Query: 1  MKLIAYRRWLRTPNVDGSRFRKFCTRRRNLELDNENDSHFVYVLEQIVRGNQSWKIAFNN 60
          MKL+ YRRWLRTPNVDG RFRKFCT RRNLE+DNEN+SHFVYVLEQIVRGNQSWKIAFNN
Sbjct: 1  MKLVGYRRWLRTPNVDGRRFRKFCTGRRNLEVDNENESHFVYVLEQIVRGNQSWKIAFNN 60

Query: 61 SSISG-VKPDCYIYTVVVKCL 81
          S ISG +KP  ++  V+++ L
Sbjct: 61 SLISGNIKPH-HVERVLIRTL 80

[Close]
BLAST of CsaV3_1G013200 vs. TrEMBL
Match: tr|A0A2G5D638|A0A2G5D638_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02700279v1 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.3e-05
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 0 

Query: 1  MKLIAYRRWLRTPNVDGSRFRKFCTRRRNLEL-DNENDSHFVYVLEQIVRGNQSWKIAFN 60
          MKL  Y   L+ PN+     R+FC   R L   D E D  FV +L++I+RG QSW IAFN
Sbjct: 1  MKLFRYSLSLQNPNLS----RRFCNSTRKLSTEDEERDDGFVTILKEIIRGKQSWNIAFN 60

Query: 61 NSSISGVKPDCYIYTVVVKCLCELK 85
          N+ IS      +I  V+++ L + K
Sbjct: 61 NNFISQRLKPRHIEKVLIQTLDDPK 81

[Close]
BLAST of CsaV3_1G013200 vs. TrEMBL
Match: tr|A0A2I4FWI8|A0A2I4FWI8_9ROSI (putative pentatricopeptide repeat-containing protein At5g59900 OS=Juglans regia OX=51240 GN=LOC109002624 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-04
Identity = 31/80 (38.75%), Postives = 47/80 (58.75%), Query Frame = 0 

Query: 1  MKLIAYRRWLRTPNVDGSRFRKFCTRRRNLELDNENDSHFVYVLEQIVRGNQSWKIAFNN 60
          MKLI   R L    +   + R  CT +   + + EN+SHFV +L  IVRG+QSWKIA NN
Sbjct: 1  MKLIRPHRPLTNSTIYRKQ-RNLCTSKFKSQDNEENESHFVSILRDIVRGSQSWKIALNN 60

Query: 61 SSISGVKPDCYIYTVVVKCL 81
          + +SG     ++  V+++ +
Sbjct: 61 TYMSGTLRPHHVEKVLIQTI 79

[Close]
BLAST of CsaV3_1G013200 vs. TrEMBL
Match: tr|A0A2P4JL22|A0A2P4JL22_QUESU (Putative pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_05967 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.6e-04
Identity = 31/80 (38.75%), Postives = 45/80 (56.25%), Query Frame = 0 

Query: 1  MKLIAYRRWLRTPNVDGSRFRKFCTRRRNLELDNENDSHFVYVLEQIVRGNQSWKIAFNN 60
          MKL    R L    +   + R   T +   + ++ENDSHFV +L  IVRGNQSWKIA NN
Sbjct: 1  MKLTLPHRPLSNSPIHYIKQRNLSTSKFTSQDNDENDSHFVSILGDIVRGNQSWKIALNN 60

Query: 61 SSISGVKPDCYIYTVVVKCL 81
          + IS      ++  V+++ +
Sbjct: 61 TYISSTLGPHHVEKVLIQTI 80

The following BLAST results are available for this feature:
BLAST of CsaV3_1G013200 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147277.14.9e-2983.75PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucum... [more]
XP_008463320.11.1e-2576.54PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucum... [more]
XP_023511929.11.0e-1875.36putative pentatricopeptide repeat-containing protein At5g59900 [Cucurbita pepo s... [more]
XP_022986767.13.0e-1873.91putative pentatricopeptide repeat-containing protein At5g59900 isoform X2 [Cucur... [more]
XP_022986766.13.0e-1873.91putative pentatricopeptide repeat-containing protein At5g59900 isoform X1 [Cucur... [more]
BLAST of CsaV3_1G013200 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G013200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G013200 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVC6|A0A0A0LVC6_CUCSA3.3e-2983.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G096070 PE=4 SV=1[more]
tr|A0A1S3CIX5|A0A1S3CIX5_CUCME7.5e-2676.54putative pentatricopeptide repeat-containing protein At5g59900 OS=Cucumis melo O... [more]
tr|A0A2G5D638|A0A2G5D638_AQUCA4.3e-0541.18Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02700279v1 PE=4... [more]
tr|A0A2I4FWI8|A0A2I4FWI8_9ROSI1.6e-0438.75putative pentatricopeptide repeat-containing protein At5g59900 OS=Juglans regia ... [more]
tr|A0A2P4JL22|A0A2P4JL22_QUESU3.6e-0438.75Putative pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 G... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G013200.1CsaV3_1G013200.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 134..258
e-value: 2.2E-27
score: 97.6
coord: 259..363
e-value: 1.5E-34
score: 120.9
coord: 657..752
e-value: 4.4E-26
score: 93.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 364..477
e-value: 4.6E-34
score: 120.3
coord: 478..588
e-value: 5.1E-26
score: 93.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 589..655
e-value: 2.2E-15
score: 58.6
coord: 32..133
e-value: 1.1E-16
score: 62.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 281..311
e-value: 3.5E-8
score: 33.1
coord: 72..101
e-value: 0.18
score: 12.0
coord: 595..622
e-value: 0.21
score: 11.8
coord: 180..206
e-value: 0.87
score: 9.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 421..449
e-value: 0.0029
score: 15.7
coord: 351..385
e-value: 5.0E-8
score: 30.6
coord: 212..244
e-value: 4.7E-9
score: 33.9
coord: 386..420
e-value: 7.2E-11
score: 39.6
coord: 106..139
e-value: 2.7E-4
score: 18.9
coord: 71..104
e-value: 4.2E-5
score: 21.4
coord: 525..558
e-value: 5.8E-7
score: 27.3
coord: 699..732
e-value: 5.8E-7
score: 27.3
coord: 560..586
e-value: 9.9E-6
score: 23.4
coord: 317..350
e-value: 1.4E-9
score: 35.5
coord: 141..175
e-value: 3.9E-6
score: 24.7
coord: 246..279
e-value: 1.3E-7
score: 29.4
coord: 281..315
e-value: 9.4E-9
score: 32.9
coord: 664..697
e-value: 2.8E-7
score: 28.3
coord: 629..663
e-value: 1.4E-7
score: 29.2
coord: 457..489
e-value: 5.1E-6
score: 24.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 456..499
e-value: 2.5E-9
score: 37.1
coord: 313..362
e-value: 5.2E-18
score: 64.9
coord: 383..432
e-value: 1.2E-17
score: 63.7
coord: 696..740
e-value: 5.8E-10
score: 39.1
coord: 627..675
e-value: 4.9E-13
score: 48.9
coord: 104..152
e-value: 1.4E-10
score: 41.1
coord: 522..571
e-value: 6.6E-12
score: 45.3
coord: 208..256
e-value: 4.3E-17
score: 61.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 279..313
score: 12.88
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 489..522
score: 6.347
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 349..383
score: 11.751
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 209..243
score: 13.515
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 69..103
score: 9.043
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 139..173
score: 11.203
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 314..348
score: 13.066
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 697..731
score: 11.904
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 104..138
score: 10.501
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 593..623
score: 7.826
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 558..592
score: 10.479
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 662..696
score: 12.419
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 419..453
score: 9.164
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 627..661
score: 13.197
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 174..208
score: 8.528
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 523..557
score: 11.235
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 384..418
score: 14.009
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 454..488
score: 10.95
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 244..278
score: 10.337
NoneNo IPR availablePANTHERPTHR24015:SF965SUBFAMILY NOT NAMEDcoord: 89..170
coord: 694..740
NoneNo IPR availablePANTHERPTHR24015:SF965SUBFAMILY NOT NAMEDcoord: 296..706
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 89..170
NoneNo IPR availablePANTHERPTHR24015:SF965SUBFAMILY NOT NAMEDcoord: 163..295
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 296..706
coord: 163..295
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 694..740
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 82..285
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 592..695
coord: 383..416
coord: 220..309

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G013200CSPI01G13040Wild cucumber (PI 183967)cpicucB001
CsaV3_1G013200Cucsa.207560Cucumber (Gy14) v1cgycucB332
CsaV3_1G013200CsGy1G013130Cucumber (Gy14) v2cgybcucB002
CsaV3_1G013200MELO3C035453.2Melon (DHL92) v3.6.1cucmedB009
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G013200Silver-seed gourdcarcucB0474
CsaV3_1G013200Cucurbita maxima (Rimu)cmacucB0234
CsaV3_1G013200Cucurbita maxima (Rimu)cmacucB0518
CsaV3_1G013200Cucurbita moschata (Rifu)cmocucB0221
CsaV3_1G013200Cucurbita moschata (Rifu)cmocucB0505
CsaV3_1G013200Cucurbita pepo (Zucchini)cpecucB0635
CsaV3_1G013200Cucurbita pepo (Zucchini)cpecucB0657
CsaV3_1G013200Bottle gourd (USVL1VR-Ls)cuclsiB025
CsaV3_1G013200Bottle gourd (USVL1VR-Ls)cuclsiB053
CsaV3_1G013200Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G013200Watermelon (Charleston Gray)cucwcgB040
CsaV3_1G013200Watermelon (97103) v1cucwmB015
CsaV3_1G013200Watermelon (97103) v2cucwmbB032
CsaV3_1G013200Wax gourdcucwgoB051