CsaV3_1G013100 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G013100
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionDof zinc finger protein like
Locationchr1 : 8448239 .. 8450236 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCTCTCATCATTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTAAATTGTTCCATTGGGATTATTGTTGCTTTATATATTAACCCATCTCCCCTTCTTCTTTCTTCCTCACTTCTCATCACTTTCCTTTACCCTCTTTTCCTCTCTCTCTCTCTCCTTCTTCTTCTTCTTTCTACACACTTCAATATCAAAAAATCTTCTGTTTTGTTGTTTTTGTTTCACTTCAACAATGGATCTTCCCACTGCCCAACATCATCAGGTAATTTATTACAACACACCATCATATATCTATACATCATCCTTTTTCATTATTATGCTTCTTCTCTTCATCTCTTTCTTTAATCTCCCTCTTTCATCATTTATGGTTTCTTTCTCCTCTCTCTCTCTCTCGCTTCTATTCTAATATTCGAATGTTTTCAGAAAAAAATTAGGCTTCTTTTCTCCTAATTTTTGTACTTTGATTATTATATTTCTTGAAAAAGAAAAAAACAGGTTTTTGAAAATTTTCAGTTTAGTTTTAATCATGTCAATAGAAACTGGATAACCATTACAAACAAAAGGAACTTAAATGTAGAAGAAGAAGTAAGTGTTTATAAGCGTTTTTTTAACACAGGGTTTCAAACCTCTAAGCTTAATTTGGGAAGAAAGGGAGAGGGAAAATGGGATTTTTTGTTTTTGGGTTTGAAATTATCAGTACTAATTATATAGATATGATGATGATTTATGATAGGAAATGGAAACAAATTCAGTGGAGAACATGATGGTATGTCAAAACTCAAAAGATCATCAAGTTAGAAAGGCAAGACCACAGCCAGAACAAGCGTTGAAATGTCCAAGATGTGACTCAACAAACACCAAATTTTGTTACTATAACAACTACAGCCTATCTCAACCAAGATACTTTTGCAAATCCTGCCGCCGTTACTGGACACAAGGTGGTACCCTCCGCAATGTTCCAGTTGGCGGAGGTTGCCGTAAAAACAAAAGATCATCATCATCCTCATCCTCCTCAGCTTCCTCTAAAAAATCCCAAGACCATCCCTTCGGTGCCTCCACCGCCCTACCCGGCCAATTGTCCTACGATCACCAAGCTCATGATCTCAGTCTCGCATTCGCTAGGCTTCACAAAAACTCGTGTTCAAATGGGAGCGTTCCCACATTCAACGACTTCGATTTCTCCATCTTGGGAATGCCAAATGGCGATGTTTTGAACGGCGGCGGCTTTGCCTATAATTCTCAAAGCTTGTATTATGGAAATGACAACAACATGGGAGCTGGAATCGAAAGTAATGGCGATCAAATGAGATTACAGCCGTACGATCACGATCATCATCATCATCATCACAATCAACAATATAGCAATGCTACAACAACAGCGGTAACAGTGACGACGATGAAGCAAGAGCTATTTGGAGGACGAGAAATGAATAACGGAAGTGACCAAAGTAAAATCCTTTGGGGATACCCAAATTGGCAAATGAACAATAACAATAATAACGTAATAGATTCAAACACAACCACAACGACGATGATGGGAGCAATGGATTTCGATTCGGGTTCAGCTCGAGAAAGTTGGAACAGCAATGCCTTCACTAATGCTTCTTCTTGGCATGGCCTTCTCAATAGTCCTCTCATGTAATTCCCCTTACCTTCGTTAAAATTATTGTGTGTTCATTTTTTTTTTCTTTTTTCTTACTTAGAAACTAGTTAGGAAAGAACCCCTTCCCCCCATAGAATATGATTTTAATTTCAAGGTTTAATGTGTTCTTTTTTCTTTCTTTTTTTGGGATTAAGTTTTGTACTAAAATAGAGGTGGTTCATTTGAATCATTTCATGTGTTATTAGTTAATTTAATTTTGGTTATTGTTTTCTTAATTATAATTAATTAACTTTAATTAGTGGTTAATATATTGAAAAAATTATGACCATCGGATTGATTTTGCCGACCATCATTGGTGGCCGTTGATATGGCTATGGACAATGAGAGTGATAT

mRNA sequence

ATGGATCTTCCCACTGCCCAACATCATCAGGAAATGGAAACAAATTCAGTGGAGAACATGATGGTATGTCAAAACTCAAAAGATCATCAAGTTAGAAAGGCAAGACCACAGCCAGAACAAGCGTTGAAATGTCCAAGATGTGACTCAACAAACACCAAATTTTGTTACTATAACAACTACAGCCTATCTCAACCAAGATACTTTTGCAAATCCTGCCGCCGTTACTGGACACAAGGTGGTACCCTCCGCAATGTTCCAGTTGGCGGAGGTTGCCGTAAAAACAAAAGATCATCATCATCCTCATCCTCCTCAGCTTCCTCTAAAAAATCCCAAGACCATCCCTTCGGTGCCTCCACCGCCCTACCCGGCCAATTGTCCTACGATCACCAAGCTCATGATCTCAGTCTCGCATTCGCTAGGCTTCACAAAAACTCGTGTTCAAATGGGAGCGTTCCCACATTCAACGACTTCGATTTCTCCATCTTGGGAATGCCAAATGGCGATGTTTTGAACGGCGGCGGCTTTGCCTATAATTCTCAAAGCTTGTATTATGGAAATGACAACAACATGGGAGCTGGAATCGAAAGTAATGGCGATCAAATGAGATTACAGCCGTACGATCACGATCATCATCATCATCATCACAATCAACAATATAGCAATGCTACAACAACAGCGGTAACAGTGACGACGATGAAGCAAGAGCTATTTGGAGGACGAGAAATGAATAACGGAAGTGACCAAAGTAAAATCCTTTGGGGATACCCAAATTGGCAAATGAACAATAACAATAATAACGTAATAGATTCAAACACAACCACAACGACGATGATGGGAGCAATGGATTTCGATTCGGGTTCAGCTCGAGAAAGTTGGAACAGCAATGCCTTCACTAATGCTTCTTCTTGGCATGGCCTTCTCAATAGTCCTCTCATGTAA

Coding sequence (CDS)

ATGGATCTTCCCACTGCCCAACATCATCAGGAAATGGAAACAAATTCAGTGGAGAACATGATGGTATGTCAAAACTCAAAAGATCATCAAGTTAGAAAGGCAAGACCACAGCCAGAACAAGCGTTGAAATGTCCAAGATGTGACTCAACAAACACCAAATTTTGTTACTATAACAACTACAGCCTATCTCAACCAAGATACTTTTGCAAATCCTGCCGCCGTTACTGGACACAAGGTGGTACCCTCCGCAATGTTCCAGTTGGCGGAGGTTGCCGTAAAAACAAAAGATCATCATCATCCTCATCCTCCTCAGCTTCCTCTAAAAAATCCCAAGACCATCCCTTCGGTGCCTCCACCGCCCTACCCGGCCAATTGTCCTACGATCACCAAGCTCATGATCTCAGTCTCGCATTCGCTAGGCTTCACAAAAACTCGTGTTCAAATGGGAGCGTTCCCACATTCAACGACTTCGATTTCTCCATCTTGGGAATGCCAAATGGCGATGTTTTGAACGGCGGCGGCTTTGCCTATAATTCTCAAAGCTTGTATTATGGAAATGACAACAACATGGGAGCTGGAATCGAAAGTAATGGCGATCAAATGAGATTACAGCCGTACGATCACGATCATCATCATCATCATCACAATCAACAATATAGCAATGCTACAACAACAGCGGTAACAGTGACGACGATGAAGCAAGAGCTATTTGGAGGACGAGAAATGAATAACGGAAGTGACCAAAGTAAAATCCTTTGGGGATACCCAAATTGGCAAATGAACAATAACAATAATAACGTAATAGATTCAAACACAACCACAACGACGATGATGGGAGCAATGGATTTCGATTCGGGTTCAGCTCGAGAAAGTTGGAACAGCAATGCCTTCACTAATGCTTCTTCTTGGCATGGCCTTCTCAATAGTCCTCTCATGTAA

Protein sequence

MDLPTAQHHQEMETNSVENMMVCQNSKDHQVRKARPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTQGGTLRNVPVGGGCRKNKRSSSSSSSSASSKKSQDHPFGASTALPGQLSYDHQAHDLSLAFARLHKNSCSNGSVPTFNDFDFSILGMPNGDVLNGGGFAYNSQSLYYGNDNNMGAGIESNGDQMRLQPYDHDHHHHHHNQQYSNATTTAVTVTTMKQELFGGREMNNGSDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMGAMDFDSGSARESWNSNAFTNASSWHGLLNSPLM
Homology
[Close]
BLAST of CsaV3_1G013100 vs. NCBI nr
Match: XP_004147273.1 (PREDICTED: dof zinc finger protein DOF2.1-like [Cucumis sativus] >KGN64763.1 hypothetical protein Csa_1G089510 [Cucumis sativus])

HSP 1 Score: 487.3 bits (1253), Expect = 4.0e-134
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0 

Query: 1   MDLPTAQHHQEMETNSVENMMVCQNSKDHQVRKARPQPEQALKCPRCDSTNTKFCYYNNY 60
           MDLPTAQHHQEMETNSVENMMVCQNSKDHQVRKARPQPEQALKCPRCDSTNTKFCYYNNY
Sbjct: 1   MDLPTAQHHQEMETNSVENMMVCQNSKDHQVRKARPQPEQALKCPRCDSTNTKFCYYNNY 60

Query: 61  SLSQPRYFCKSCRRYWTQGGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXXXDHPFGASTA 120
           SLSQPRYFCKSCRRYWTQGGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXXXDHPFGASTA
Sbjct: 61  SLSQPRYFCKSCRRYWTQGGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXXXDHPFGASTA 120

Query: 121 LPGQLSYDHQAHDLSLAFARLHKNSCSNGSVPTFNDFDFSILGMPNGDVLNGGGFAYNSQ 180
           LPGQLSYDHQAHDLSLAFARLHKNSCSNGSVPTFNDFDFSILGMPNGDVLNGGGFAYNSQ
Sbjct: 121 LPGQLSYDHQAHDLSLAFARLHKNSCSNGSVPTFNDFDFSILGMPNGDVLNGGGFAYNSQ 180

Query: 181 SLYYGNDNNMGAGIESNGDQMRLQPYDXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGGR 240
           SLYYGNDNNMGAGIESNGDQMRLQPYDXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGGR
Sbjct: 181 SLYYGNDNNMGAGIESNGDQMRLQPYDXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGGR 240

Query: 241 EMNNGSDQSKILWGYPNWQXXXXXXXXXXXXXXXXXXXGAMDFDSGSARESWNSNAFTNA 300
           EMNNGSDQSKILWGYPNWQXXXXXXXXXXXXXXXXXXXGAMDFDSGSARESWNSNAFTNA
Sbjct: 241 EMNNGSDQSKILWGYPNWQXXXXXXXXXXXXXXXXXXXGAMDFDSGSARESWNSNAFTNA 300

Query: 301 SSWHGLLNSPLM 313
           SSWHGLLNSPLM
Sbjct: 301 SSWHGLLNSPLM 312

[Close]
BLAST of CsaV3_1G013100 vs. NCBI nr
Match: XP_008464848.1 (PREDICTED: dof zinc finger protein DOF5.3-like [Cucumis melo])

HSP 1 Score: 310.1 bits (793), Expect = 8.7e-81
Identity = 171/174 (98.28%), Postives = 172/174 (98.85%), Query Frame = 0 

Query: 1   MDLPTAQHHQEMETNSVENMMVCQNSKDHQVRKARPQPEQALKCPRCDSTNTKFCYYNNY 60
           MDLPTAQHHQEMETNSVENMMVCQNSKDHQ RKARPQPEQALKCPRCDSTNTKFCYYNNY
Sbjct: 1   MDLPTAQHHQEMETNSVENMMVCQNSKDHQTRKARPQPEQALKCPRCDSTNTKFCYYNNY 60

Query: 61  SLSQPRYFCKSCRRYWTQGGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXXXDHPFGASTA 120
           SLSQPRYFCKSCRRYWTQGGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXXXDHPFGASTA
Sbjct: 61  SLSQPRYFCKSCRRYWTQGGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXXXDHPFGASTA 120

Query: 121 LPGQLSYDHQAHDLSLAFARLHKNSCSNGSVPTFNDFDFSILGMPNGDVLNGGG 175
           LPGQLSYDHQAHDLSLAFARLHKNSCSNG VPTFNDFDFSILGMPNGD+LNGGG
Sbjct: 121 LPGQLSYDHQAHDLSLAFARLHKNSCSNGGVPTFNDFDFSILGMPNGDLLNGGG 174

[Close]
BLAST of CsaV3_1G013100 vs. NCBI nr
Match: XP_023525316.1 (dof zinc finger protein DOF2.1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 249.6 bits (636), Expect = 1.4e-62
Identity = 181/322 (56.21%), Postives = 195/322 (60.56%), Query Frame = 0 

Query: 1   MDLPTAQHHQEMETNSVENMMVCQNSKD--HQVRKARPQPEQALKCPRCDSTNTKFCYYN 60
           MDL  A +HQE+E          Q+SK    Q RK RPQP+QALKCPRCDS NTKFCYYN
Sbjct: 1   MDLSAAVNHQEIEQQ--------QHSKPSLDQTRKPRPQPKQALKCPRCDSPNTKFCYYN 60

Query: 61  NYSLSQPRYFCKSCRRYWTQGGTLRNVPVG----XXXXXXXXXXXXXXXXXXXXXXXDHP 120
           NYSLSQPRYFCKSCRRYWTQGGTLRNVPVG        XXXXXXXXXXXXXXXXXXX  P
Sbjct: 61  NYSLSQPRYFCKSCRRYWTQGGTLRNVPVGGGCRKNKRXXXXXXXXXXXXXXXXXXXXXP 120

Query: 121 FGA---STALPGQLSYDHQAHDLSLAFARLHKNSCSNGSV-PTFNDFDFSILGMPNGDVL 180
           F A   +T LP  LSYDHQ     LAFARLHKNSC  GSV PTFNDFDF  LGMPNGDVL
Sbjct: 121 FAAAAVATVLP-HLSYDHQ----GLAFARLHKNSC--GSVTPTFNDFDFPTLGMPNGDVL 180

Query: 181 NGGGFAYNSQSLYYGNDNNMGAGIESNGDQMRLQPYDXXXXXXXXXXXXXXXXXXXXXXX 240
           N  GF YNSQ +YY N+NN   GIES  DQMRLQPYD                       
Sbjct: 181 N--GFPYNSQGMYYDNNNNNIGGIESAIDQMRLQPYDQDHHATTTAVTVTTMK------- 240

Query: 241 XXXXXLFGGREMNNGSDQSKILWGYPNWQXXXXXXXXXXXXXXXXXXXGAMDFDSGSARE 300
                    +E+ N  D+SKI+WGY N                     G MD +     +
Sbjct: 241 ---------QEVYNAGDESKIVWGYAN-------------------NNGIMDSNMMMGMD 266

Query: 301 SWNSNAFTNASSWHGLLNSPLM 313
                 F+NASSWHGLLNSPLM
Sbjct: 301 F----GFSNASSWHGLLNSPLM 266

[Close]
BLAST of CsaV3_1G013100 vs. NCBI nr
Match: XP_022998890.1 (dof zinc finger protein DOF2.1-like [Cucurbita maxima])

HSP 1 Score: 245.4 bits (625), Expect = 2.6e-61
Identity = 181/321 (56.39%), Postives = 194/321 (60.44%), Query Frame = 0 

Query: 1   MDLPTAQHHQEMETNSVENMMVCQNSKD--HQVRKARPQPEQALKCPRCDSTNTKFCYYN 60
           MDL  A HHQE+E          Q+SK    Q RK RPQP+QALKCPRCDS NTKFCYYN
Sbjct: 1   MDLSAAVHHQEIEQ---------QHSKPSLDQTRKPRPQPKQALKCPRCDSPNTKFCYYN 60

Query: 61  NYSLSQPRYFCKSCRRYWTQGGTLRNVPVG-----XXXXXXXXXXXXXXXXXXXXXXXDH 120
           NYSLSQPRYFCKSCRRYWTQGGTLRN+PVG      XXXXXXXXXXXXXXXXXXXXXXDH
Sbjct: 61  NYSLSQPRYFCKSCRRYWTQGGTLRNIPVGGGCRKNXXXXXXXXXXXXXXXXXXXXXXDH 120

Query: 121 PFGASTALPGQLSYDHQAHDLSLAFARLHKNSCSNGSV-PTFNDFDFSILGMPNGDVLNG 180
           PF ++ ALP  LSYDHQ     LAFARLHKNSC  GSV PTFNDFDF  LGMPNGDVLN 
Sbjct: 121 PFASAAALP-HLSYDHQ----GLAFARLHKNSC--GSVTPTFNDFDFPTLGMPNGDVLN- 180

Query: 181 GGFAYNSQSLY-YGNDNNMGAGIESNGDQMRLQPYDXXXXXXXXXXXXXXXXXXXXXXXX 240
            GF YNSQ +Y          GIES  DQMRLQPYD                        
Sbjct: 181 -GFPYNSQGMYXXXXXXXXXGGIESGIDQMRLQPYDQDHHATTTAVTVTTMK-------- 240

Query: 241 XXXXLFGGREMNNGSDQSKILWGYPNWQXXXXXXXXXXXXXXXXXXXGAMDFDSGSARES 300
                   +E+ N  D+SKILWG  N                     G MD +     + 
Sbjct: 241 --------QEVYNAGDESKILWGIAN-------------------NNGIMDSNMMMGMDF 264

Query: 301 WNSNAFTNASSWHGLLNSPLM 313
                F+NASSWHGLLNSPLM
Sbjct: 301 ----GFSNASSWHGLLNSPLM 264

[Close]
BLAST of CsaV3_1G013100 vs. NCBI nr
Match: XP_022949431.1 (dof zinc finger protein DOF5.3-like [Cucurbita moschata])

HSP 1 Score: 233.0 bits (593), Expect = 1.4e-57
Identity = 177/321 (55.14%), Postives = 188/321 (58.57%), Query Frame = 0 

Query: 1   MDLPTAQHHQEMETNSVENMMVCQNSKD--HQVRKARPQPEQALKCPRCDSTNTKFCYYN 60
           MDL  A HHQE+E          Q+SK    Q RK RPQP+QALKCPRCDS NTKFCYYN
Sbjct: 1   MDLSAAVHHQEIEQ---------QHSKPSLDQTRKPRPQPKQALKCPRCDSPNTKFCYYN 60

Query: 61  NYSLSQPRYFCKSCRRYWTQGGTLRNVPVG-----XXXXXXXXXXXXXXXXXXXXXXXDH 120
           NYSLSQPRYFCKSCRRYWTQGGTLRNVPVG       XXXXXXXXXXXXXXXXXXXXX  
Sbjct: 61  NYSLSQPRYFCKSCRRYWTQGGTLRNVPVGGGCRKNKXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 PFGASTALPGQLSYDHQAHDLSLAFARLHKNSCSNGSV-PTFNDFDFSILGMPNGDVLNG 180
               +T LP  LSYDHQ     LAFARLHKNSC  GSV PTFNDFDF  LGMPNGDVLN 
Sbjct: 121 XXXXATVLP-HLSYDHQ----GLAFARLHKNSC--GSVTPTFNDFDFPTLGMPNGDVLN- 180

Query: 181 GGFAYNSQSL-YYGNDNNMGAGIESNGDQMRLQPYDXXXXXXXXXXXXXXXXXXXXXXXX 240
            GF YNSQ +           GIES  DQMRLQPYD                        
Sbjct: 181 -GFPYNSQEMXXXXXXXXXXGGIESGIDQMRLQPYDQDHHATTTAVTVTTMK-------- 240

Query: 241 XXXXLFGGREMNNGSDQSKILWGYPNWQXXXXXXXXXXXXXXXXXXXGAMDFDSGSARES 300
                   +E+ N  D+SKILWGY N                     G MD +     + 
Sbjct: 241 --------QEVYNAGDESKILWGYAN-------------------NNGIMDSNMMMGMDF 264

Query: 301 WNSNAFTNASSWHGLLNSPLM 313
                F+NASSWHGLLNSPLM
Sbjct: 301 ----GFSNASSWHGLLNSPLM 264

[Close]
BLAST of CsaV3_1G013100 vs. TAIR10
Match: AT5G60200.1 (TARGET OF MONOPTEROS 6)

HSP 1 Score: 118.6 bits (296), Expect = 6.8e-27
Identity = 63/118 (53.39%), Postives = 71/118 (60.17%), Query Frame = 0 

Query: 35  RPQ-PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTQGGTLRNVPVGXXXXX 94
           RPQ PE AL+CPRCDSTNTKFCYYNNYSL+QPRYFCKSCRRYWT+GGTLRN+PVG     
Sbjct: 47  RPQPPELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRK 106

Query: 95  XXXXXXXXXXXXXXXXXXDHPFGASTALPGQLSYDHQAH-DLSLAFARLHKNSCSNGS 151
                                 G   +  G   Y +  H DLSLAFA L+K    + S
Sbjct: 107 NKRSTSSAARSLRTTPEPASHDGKVFSAAGFNGYSNNEHIDLSLAFALLNKQHPGSSS 164

[Close]
BLAST of CsaV3_1G013100 vs. TAIR10
Match: AT2G28510.1 (Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 115.2 bits (287), Expect = 7.5e-26
Identity = 93/155 (60.00%), Postives = 104/155 (67.10%), Query Frame = 0 

Query: 40  QALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTQGGTLRNVPVGXXXXXXXXXXX 99
           +A  CPRC+S NTKFCYYNNYSLSQPRYFCKSCRRYWT+GGTLRNVPVGXXXXXXXXXXX
Sbjct: 46  EAQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGXXXXXXXXXXX 105

Query: 100 XXXXXXXXXXXXD-HPFGASTAL-----PGQLSYDHQAHDLSLAFARLHKNSCSN-GSVP 159
           XXXXXXXXXX  + H       L     P    YDH   DL+LAFA L K+  S+  + P
Sbjct: 106 XXXXXXXXXXSINFHTDPLQNPLITGMPPSSFGYDHSI-DLNLAFATLQKHHLSSQATTP 165

Query: 160 TFN-DFDFSILGMPNGDV-LNGGGFAYNSQSLYYG 186
           +F    D SI G    DV + GG     + SL YG
Sbjct: 166 SFGFGGDLSIYGNSTNDVGIFGGQNGTYNNSLCYG 199

[Close]
BLAST of CsaV3_1G013100 vs. TAIR10
Match: AT4G24060.1 (Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-25
Identity = 46/57 (80.70%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 32 RKARPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTQGGTLRNVPVG 89
          RKARP+ +QA+ CPRC+STNTKFCYYNNYSL+QPRYFCK CRRYWT+GG+LRN+PVG
Sbjct: 43 RKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVG 99

[Close]
BLAST of CsaV3_1G013100 vs. TAIR10
Match: AT1G64620.1 (Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 112.1 bits (279), Expect = 6.3e-25
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 0 

Query: 32 RKARPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTQGGTLRNVPVG 89
          RKARP+ +QAL CPRC+S NTKFCYYNNYSL+QPRYFCK CRRYWT GG+LRN+PVG
Sbjct: 39 RKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVG 95

[Close]
BLAST of CsaV3_1G013100 vs. TAIR10
Match: AT3G45610.1 (Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 110.2 bits (274), Expect = 2.4e-24
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 0 

Query: 5  TAQHHQEMETNSVENMMVCQNSKDHQVRKARPQPEQALKCPRCDSTNTKFCYYNNYSLSQ 64
          ++ H   M  +S          K     +  P PEQ+L+CPRCDSTNTKFCYYNNYSLSQ
Sbjct: 4  SSMHQNVMGVSSCSTQDYQNQKKPLSATRPAP-PEQSLRCPRCDSTNTKFCYYNNYSLSQ 63

Query: 65 PRYFCKSCRRYWTQGGTLRNVPVG 89
          PRYFCKSCRRYWT+GG LRN+P+G
Sbjct: 64 PRYFCKSCRRYWTKGGILRNIPIG 86

[Close]
BLAST of CsaV3_1G013100 vs. Swiss-Prot
Match: sp|Q84TE9|DOF53_ARATH (Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana OX=3702 GN=DOF5.3 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-25
Identity = 63/118 (53.39%), Postives = 71/118 (60.17%), Query Frame = 0 

Query: 35  RPQ-PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTQGGTLRNVPVGXXXXX 94
           RPQ PE AL+CPRCDSTNTKFCYYNNYSL+QPRYFCKSCRRYWT+GGTLRN+PVG     
Sbjct: 47  RPQPPELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRK 106

Query: 95  XXXXXXXXXXXXXXXXXXDHPFGASTALPGQLSYDHQAH-DLSLAFARLHKNSCSNGS 151
                                 G   +  G   Y +  H DLSLAFA L+K    + S
Sbjct: 107 NKRSTSSAARSLRTTPEPASHDGKVFSAAGFNGYSNNEHIDLSLAFALLNKQHPGSSS 164

[Close]
BLAST of CsaV3_1G013100 vs. Swiss-Prot
Match: sp|Q8LE43|DOF21_ARATH (Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana OX=3702 GN=DOF2.1 PE=2 SV=2)

HSP 1 Score: 115.2 bits (287), Expect = 1.4e-24
Identity = 93/155 (60.00%), Postives = 104/155 (67.10%), Query Frame = 0 

Query: 40  QALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTQGGTLRNVPVGXXXXXXXXXXX 99
           +A  CPRC+S NTKFCYYNNYSLSQPRYFCKSCRRYWT+GGTLRNVPVGXXXXXXXXXXX
Sbjct: 46  EAQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGXXXXXXXXXXX 105

Query: 100 XXXXXXXXXXXXD-HPFGASTAL-----PGQLSYDHQAHDLSLAFARLHKNSCSN-GSVP 159
           XXXXXXXXXX  + H       L     P    YDH   DL+LAFA L K+  S+  + P
Sbjct: 106 XXXXXXXXXXSINFHTDPLQNPLITGMPPSSFGYDHSI-DLNLAFATLQKHHLSSQATTP 165

Query: 160 TFN-DFDFSILGMPNGDV-LNGGGFAYNSQSLYYG 186
           +F    D SI G    DV + GG     + SL YG
Sbjct: 166 SFGFGGDLSIYGNSTNDVGIFGGQNGTYNNSLCYG 199

[Close]
BLAST of CsaV3_1G013100 vs. Swiss-Prot
Match: sp|O24463|PBF_MAIZE (Dof zinc finger protein PBF OS=Zea mays OX=4577 GN=PBF PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.4e-24
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 0 

Query: 32  RKARPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTQGGTLRNVPVG 89
           RK RPQ  +ALKCPRCDS NTKFCYYNNYS+SQPRYFCK+CRRYWT GGTLRNVP+G
Sbjct: 50  RKPRPQLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIG 106

[Close]
BLAST of CsaV3_1G013100 vs. Swiss-Prot
Match: sp|Q8LAP8|DOF46_ARATH (Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana OX=3702 GN=DOF4.6 PE=2 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 2.3e-24
Identity = 46/57 (80.70%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 32 RKARPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTQGGTLRNVPVG 89
          RKARP+ +QA+ CPRC+STNTKFCYYNNYSL+QPRYFCK CRRYWT+GG+LRN+PVG
Sbjct: 43 RKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVG 99

[Close]
BLAST of CsaV3_1G013100 vs. Swiss-Prot
Match: sp|Q9SXG8|DOF1_ORYSJ (Dof zinc finger protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF1 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.1e-24
Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 34  ARPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTQGGTLRNVPVG 89
           ARPQ E+AL CPRC+STNTKFCYYNNYSL QPRYFCK+CRRYWT+GG+LRNVPVG
Sbjct: 70  ARPQKEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVG 124

[Close]
BLAST of CsaV3_1G013100 vs. TrEMBL
Match: tr|A0A0A0LSJ8|A0A0A0LSJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G089510 PE=4 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 2.6e-134
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0 

Query: 1   MDLPTAQHHQEMETNSVENMMVCQNSKDHQVRKARPQPEQALKCPRCDSTNTKFCYYNNY 60
           MDLPTAQHHQEMETNSVENMMVCQNSKDHQVRKARPQPEQALKCPRCDSTNTKFCYYNNY
Sbjct: 1   MDLPTAQHHQEMETNSVENMMVCQNSKDHQVRKARPQPEQALKCPRCDSTNTKFCYYNNY 60

Query: 61  SLSQPRYFCKSCRRYWTQGGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXXXDHPFGASTA 120
           SLSQPRYFCKSCRRYWTQGGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXXXDHPFGASTA
Sbjct: 61  SLSQPRYFCKSCRRYWTQGGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXXXDHPFGASTA 120

Query: 121 LPGQLSYDHQAHDLSLAFARLHKNSCSNGSVPTFNDFDFSILGMPNGDVLNGGGFAYNSQ 180
           LPGQLSYDHQAHDLSLAFARLHKNSCSNGSVPTFNDFDFSILGMPNGDVLNGGGFAYNSQ
Sbjct: 121 LPGQLSYDHQAHDLSLAFARLHKNSCSNGSVPTFNDFDFSILGMPNGDVLNGGGFAYNSQ 180

Query: 181 SLYYGNDNNMGAGIESNGDQMRLQPYDXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGGR 240
           SLYYGNDNNMGAGIESNGDQMRLQPYDXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGGR
Sbjct: 181 SLYYGNDNNMGAGIESNGDQMRLQPYDXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGGR 240

Query: 241 EMNNGSDQSKILWGYPNWQXXXXXXXXXXXXXXXXXXXGAMDFDSGSARESWNSNAFTNA 300
           EMNNGSDQSKILWGYPNWQXXXXXXXXXXXXXXXXXXXGAMDFDSGSARESWNSNAFTNA
Sbjct: 241 EMNNGSDQSKILWGYPNWQXXXXXXXXXXXXXXXXXXXGAMDFDSGSARESWNSNAFTNA 300

Query: 301 SSWHGLLNSPLM 313
           SSWHGLLNSPLM
Sbjct: 301 SSWHGLLNSPLM 312

[Close]
BLAST of CsaV3_1G013100 vs. TrEMBL
Match: tr|A0A1S3CMI2|A0A1S3CMI2_CUCME (dof zinc finger protein DOF5.3-like OS=Cucumis melo OX=3656 GN=LOC103502622 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 5.8e-81
Identity = 171/174 (98.28%), Postives = 172/174 (98.85%), Query Frame = 0 

Query: 1   MDLPTAQHHQEMETNSVENMMVCQNSKDHQVRKARPQPEQALKCPRCDSTNTKFCYYNNY 60
           MDLPTAQHHQEMETNSVENMMVCQNSKDHQ RKARPQPEQALKCPRCDSTNTKFCYYNNY
Sbjct: 1   MDLPTAQHHQEMETNSVENMMVCQNSKDHQTRKARPQPEQALKCPRCDSTNTKFCYYNNY 60

Query: 61  SLSQPRYFCKSCRRYWTQGGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXXXDHPFGASTA 120
           SLSQPRYFCKSCRRYWTQGGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXXXDHPFGASTA
Sbjct: 61  SLSQPRYFCKSCRRYWTQGGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXXXDHPFGASTA 120

Query: 121 LPGQLSYDHQAHDLSLAFARLHKNSCSNGSVPTFNDFDFSILGMPNGDVLNGGG 175
           LPGQLSYDHQAHDLSLAFARLHKNSCSNG VPTFNDFDFSILGMPNGD+LNGGG
Sbjct: 121 LPGQLSYDHQAHDLSLAFARLHKNSCSNGGVPTFNDFDFSILGMPNGDLLNGGG 174

[Close]
BLAST of CsaV3_1G013100 vs. TrEMBL
Match: tr|A0A2C9V2G5|A0A2C9V2G5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G140300 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.3e-45
Identity = 161/327 (49.24%), Postives = 189/327 (57.80%), Query Frame = 0 

Query: 4   PTAQHHQEMETNSVENMMVCQNSKDHQVRKARPQPEQALKCPRCDSTNTKFCYYNNYSLS 63
           P++   QEM ++S+ENM+VC  SK HQ RK RPQPEQALKCPRCDSTNTKFCYYNNYSLS
Sbjct: 3   PSSGQQQEMASHSIENMLVC--SKPHQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLS 62

Query: 64  QPRYFCKSCRRYWTQGGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXXXDHPFGASTALPG 123
           QPRYFCKSCRRYWT+GGTLRNVPVGXXXXXXXXXXXXXXXXXXXXX         ++LP 
Sbjct: 63  QPRYFCKSCRRYWTKGGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXQLTPNTHPLSSLP- 122

Query: 124 QLSYDHQAHDLSLAFARLHKNSCSNGSVPTFNDFDFSILGMPNG----------DVLNGG 183
            L+YD  ++DLSLAFARLH    S G +   +  D SILG PN           + L  G
Sbjct: 123 PLAYD--SNDLSLAFARLHHQ--STGQLGFDDQHDLSILGNPNSHTSAATPSLFEALRYG 182

Query: 184 ---GFAYNSQSLYYGNDN-NMG----AGIESNGDQMRLQPYDXXXXXXXXXXXXXXXXXX 243
                + N Q+LYYG  N NMG    +GI +   +M + PY+                  
Sbjct: 183 FLDSQSNNLQNLYYGYGNGNMGEVEDSGICNVSGEM-MMPYE----------DMSGAATQ 242

Query: 244 XXXXXXXXXXLFGGREMNNGSDQSKILWGYPNWQXXXXXXXXXXXXXXXXXXXGAMDFDS 303
                     L  GRE  N    SK+LWG+P WQ                   G +D   
Sbjct: 243 AVTVTTMKQELCNGREDEN----SKLLWGFP-WQ------------INGNGIGGELD--- 287

Query: 304 GSARESWNSNAFTNASSWHGLLNSPLM 313
              RE+WN+      S+WHGLLNSPLM
Sbjct: 303 -PGRENWNT---LGGSAWHGLLNSPLM 287

[Close]
BLAST of CsaV3_1G013100 vs. TrEMBL
Match: tr|A0A2C9W0C2|A0A2C9W0C2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G026400 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 3.0e-45
Identity = 161/325 (49.54%), Postives = 189/325 (58.15%), Query Frame = 0 

Query: 4   PTAQHHQEMETNSVENMMVCQNSKDHQVRKARPQPEQALKCPRCDSTNTKFCYYNNYSLS 63
           P++  +QEM    +EN++VC  SK HQ +K RPQPEQALKCPRCDS NTKFCYYNNYSLS
Sbjct: 3   PSSGQNQEM---PLENIIVC--SKPHQDKKPRPQPEQALKCPRCDSINTKFCYYNNYSLS 62

Query: 64  QPRYFCKSCRRYWTQGGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXXXDHPFGASTALPG 123
           QPRYFCKSCRRYWT+GGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXX  +P    T+LP 
Sbjct: 63  QPRYFCKSCRRYWTKGGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXXQTNPL---TSLP- 122

Query: 124 QLSYDHQAHDLSLAFARLHKNSCSNGSVPTFNDFDFSILGMPN------------GDVLN 183
             SYD  ++DLSLAFARL K   SNG +   +D D SILG P+             D L 
Sbjct: 123 --SYD--SNDLSLAFARLQKQ--SNGQLGFDDDHDLSILGNPSIHNTTSASTSPFFDALR 182

Query: 184 GG---GFAYNSQSLYYGNDN-NMGAGIESNGDQMRLQPYDXXXXXXXXXXXXXXXXXXXX 243
            G     + N Q+LYYG  N NMG    ++G+ M + PY+                    
Sbjct: 183 NGILDSQSNNLQNLYYGYGNGNMGE--VASGEMMMMMPYE----------DMSGAATQAV 242

Query: 244 XXXXXXXXLFGGREMNNGSDQSKILWGYPNWQXXXXXXXXXXXXXXXXXXXGAMDFDSGS 303
                      GRE     D +K+LWG+P WQ                   G  D DSG 
Sbjct: 243 TVTTMKQEFCNGRE----EDDNKVLWGFP-WQ-------------LNGNGIGGGDLDSG- 276

Query: 304 ARESWNSNAFTNASSWHGLLNSPLM 313
            RE+WN       S+WHGL+NSPLM
Sbjct: 303 -REAWNG----LGSTWHGLVNSPLM 276

[Close]
BLAST of CsaV3_1G013100 vs. TrEMBL
Match: tr|A0A2P4IR22|A0A2P4IR22_QUESU (Dof zinc finger protein dof2.1 OS=Quercus suber OX=58331 GN=CFP56_49567 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 6.7e-45
Identity = 156/334 (46.71%), Postives = 182/334 (54.49%), Query Frame = 0 

Query: 4   PTAQHHQEMETNSVENMMVCQNSKDHQVRKARPQPEQALKCPRCDSTNTKFCYYNNYSLS 63
           P++  HQEM  +S+ENM+ C  SK    RK RPQPEQALKCPRCDSTNTKFCYYNNYSLS
Sbjct: 3   PSSGQHQEMPAHSLENMLAC--SKAQPERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLS 62

Query: 64  QPRYFCKSCRRYWTQGGTLRNVPVGXXXXXXXXXXXXXXXXXXXXXXXDHPFGASTALPG 123
           QPRYFCKSCRRYWT+GGTLRNVPVG  XXXXXXXXXXXXXXXXXXXXX       T+ P 
Sbjct: 63  QPRYFCKSCRRYWTKGGTLRNVPVGGGXXXXXXXXXXXXXXXXXXXXXXXXXXPLTSFP- 122

Query: 124 QLSYDHQAHDLSLAFARLHKNSCSNGSVPTFNDFDFSILGMPNG---DVLNGGGFAY--- 183
            L+YD   +DLSLAFARL K SC       F+D D  I+G   G   D+L   G  +   
Sbjct: 123 PLTYD-STNDLSLAFARLQKQSCGQLG---FDDHDLPIMGNATGSHCDILGNPGPGFLDA 182

Query: 184 -----------NSQSLYYG--NDNNMGAGIESNG------DQMRLQPYDXXXXXXXXXXX 243
                      N  +LYYG   + NMG  +++ G       +M   PY+           
Sbjct: 183 LRTGFLDSQNNNFHNLYYGGYGNGNMGGEVDNGGGGVGVSGEMVQMPYE--------DHQ 242

Query: 244 XXXXXXXXXXXXXXXXXLFGGREMNNGSDQSKILWGYPNWQXXXXXXXXXXXXXXXXXXX 303
                            L  GRE +N     ++LWG+P WQ                   
Sbjct: 243 MSNATTTAVTVTTMKQELCNGRENDN-----RVLWGFP-WQ----------------LNG 295

Query: 304 GAMDFDSGSARESWNSNAFTNASSWHGLLNSPLM 313
            A   ++ S RESWN      A SWHGLLNSPLM
Sbjct: 303 DANMSEADSGRESWNG----LAPSWHGLLNSPLM 295

The following BLAST results are available for this feature:
BLAST of CsaV3_1G013100 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147273.14.0e-134100.00PREDICTED: dof zinc finger protein DOF2.1-like [Cucumis sativus] >KGN64763.1 hyp... [more]
XP_008464848.18.7e-8198.28PREDICTED: dof zinc finger protein DOF5.3-like [Cucumis melo][more]
XP_023525316.11.4e-6256.21dof zinc finger protein DOF2.1-like [Cucurbita pepo subsp. pepo][more]
XP_022998890.12.6e-6156.39dof zinc finger protein DOF2.1-like [Cucurbita maxima][more]
XP_022949431.11.4e-5755.14dof zinc finger protein DOF5.3-like [Cucurbita moschata][more]
BLAST of CsaV3_1G013100 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G60200.16.8e-2753.39TARGET OF MONOPTEROS 6[more]
AT2G28510.17.5e-2660.00Dof-type zinc finger DNA-binding family protein[more]
AT4G24060.11.3e-2580.70Dof-type zinc finger DNA-binding family protein[more]
AT1G64620.16.3e-2580.70Dof-type zinc finger DNA-binding family protein[more]
AT3G45610.12.4e-2459.52Dof-type zinc finger DNA-binding family protein[more]
BLAST of CsaV3_1G013100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q84TE9|DOF53_ARATH1.2e-2553.39Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana OX=3702 GN=DOF5.3 PE=2 SV... [more]
sp|Q8LE43|DOF21_ARATH1.4e-2460.00Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana OX=3702 GN=DOF2.1 PE=2 SV... [more]
sp|O24463|PBF_MAIZE1.4e-2484.21Dof zinc finger protein PBF OS=Zea mays OX=4577 GN=PBF PE=1 SV=1[more]
sp|Q8LAP8|DOF46_ARATH2.3e-2480.70Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana OX=3702 GN=DOF4.6 PE=2 SV... [more]
sp|Q9SXG8|DOF1_ORYSJ5.1e-2485.45Dof zinc finger protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF1 PE=2 ... [more]
BLAST of CsaV3_1G013100 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LSJ8|A0A0A0LSJ8_CUCSA2.6e-134100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G089510 PE=4 SV=1[more]
tr|A0A1S3CMI2|A0A1S3CMI2_CUCME5.8e-8198.28dof zinc finger protein DOF5.3-like OS=Cucumis melo OX=3656 GN=LOC103502622 PE=4... [more]
tr|A0A2C9V2G5|A0A2C9V2G5_MANES1.3e-4549.24Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G140300 PE=4 SV=... [more]
tr|A0A2C9W0C2|A0A2C9W0C2_MANES3.0e-4549.54Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G026400 PE=4 SV=... [more]
tr|A0A2P4IR22|A0A2P4IR22_QUESU6.7e-4546.71Dof zinc finger protein dof2.1 OS=Quercus suber OX=58331 GN=CFP56_49567 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR003851Znf_Dof
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G013100.1CsaV3_1G013100.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003851Zinc finger, Dof-typePFAMPF02701zf-Dofcoord: 40..96
e-value: 2.5E-34
score: 117.1
IPR003851Zinc finger, Dof-typePROSITEPS01361ZF_DOF_1coord: 44..80
IPR003851Zinc finger, Dof-typePRODOMPD007478coord: 26..96
e-value: 5.0E-31
score: 337.0
IPR003851Zinc finger, Dof-typePROSITEPS50884ZF_DOF_2coord: 42..96
score: 29.655
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..114
NoneNo IPR availablePANTHERPTHR31992FAMILY NOT NAMEDcoord: 12..273
NoneNo IPR availablePANTHERPTHR31992:SF69SUBFAMILY NOT NAMEDcoord: 12..273

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G013100CSPI06G16150Wild cucumber (PI 183967)cpicucB320
CsaV3_1G013100CSPI01G12970Wild cucumber (PI 183967)cpicucB001
CsaV3_1G013100Cucsa.207460Cucumber (Gy14) v1cgycucB332
CsaV3_1G013100CmaCh02G008660Cucurbita maxima (Rimu)cmacucB0693
CsaV3_1G013100CmaCh13G002000Cucurbita maxima (Rimu)cmacucB0234
CsaV3_1G013100CmaCh01G005270Cucurbita maxima (Rimu)cmacucB0518
CsaV3_1G013100CmaCh20G004630Cucurbita maxima (Rimu)cmacucB0649
CsaV3_1G013100CmoCh20G004970Cucurbita moschata (Rifu)cmocucB0634
CsaV3_1G013100CmoCh13G002050Cucurbita moschata (Rifu)cmocucB0221
CsaV3_1G013100CmoCh01G005580Cucurbita moschata (Rifu)cmocucB0505
CsaV3_1G013100CmoCh02G008660Cucurbita moschata (Rifu)cmocucB0678
CsaV3_1G013100Cp4.1LG16g05560Cucurbita pepo (Zucchini)cpecucB0332
CsaV3_1G013100Cp4.1LG00g03110Cucurbita pepo (Zucchini)cpecucB0002
CsaV3_1G013100Cp4.1LG02g12630Cucurbita pepo (Zucchini)cpecucB0657
CsaV3_1G013100CsGy1G013030Cucumber (Gy14) v2cgybcucB002
CsaV3_1G013100CsGy6G015670Cucumber (Gy14) v2cgybcucB256
CsaV3_1G013100Carg12302Silver-seed gourdcarcucB0474
CsaV3_1G013100Cla000540Watermelon (97103) v1cucwmB080
CsaV3_1G013100Cla005059Watermelon (97103) v1cucwmB015
CsaV3_1G013100MELO3C025737Melon (DHL92) v3.5.1cucmeB009
CsaV3_1G013100ClCG02G020850Watermelon (Charleston Gray)cucwcgB035
CsaV3_1G013100ClCG03G002430Watermelon (Charleston Gray)cucwcgB040
CsaV3_1G013100Lsi10G013050Bottle gourd (USVL1VR-Ls)cuclsiB002
CsaV3_1G013100Lsi02G014500Bottle gourd (USVL1VR-Ls)cuclsiB025
CsaV3_1G013100MELO3C005001.2Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G013100MELO3C025737.2Melon (DHL92) v3.6.1cucmedB008
CsaV3_1G013100Cla97C02G046880Watermelon (97103) v2cucwmbB028
CsaV3_1G013100Cla97C03G053460Watermelon (97103) v2cucwmbB032
CsaV3_1G013100Bhi10G000488Wax gourdcucwgoB022
CsaV3_1G013100Bhi08G000247Wax gourdcucwgoB051
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_1G013100CsaV3_6G021510Cucumber (Chinese Long) v3cuccucB055
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G013100Cucurbita pepo (Zucchini)cpecucB0635
CsaV3_1G013100Melon (DHL92) v3.5.1cucmeB010