CsaV3_1G009600 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G009600
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 5958843 .. 5959255 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGCACAATATGTTCTTATTTCATTCAATGTACAAAGGAGGAGTCCATTGCAGGAATTGGCAATTTTGGCTTTGGAATGTCTGGCATCCAAGTCCACAATTTGCAGCATTTGGGCAATGAAAAGTTTGGAATCAGAGAACATTAAACTTGAAATCAAGGTGGATCCAAGCTTTACAGACTTGCCTGCAAGCCAGTATATTAAAAAACGGGAGCTTGACATTAGTAGACCAAAAATCTCGGGTGGAAGCTCTGAAATTATGTTCCTCCCAAGTTCCAATCTTCTAGCAGCTTCTGTGCTCCTTCTTCTCCACCACCATCTTCTTCTTCCGAATTTACAATTCCACAAAAACCAAACTCCGATTACTGTAAAATCGCTTTAAACCCCAAGGCTACTGCGGAGGTGGCGTGA

mRNA sequence

ATGTCAGCACAATATGTTCTTATTTCATTCAATGTACAAAGGAGGAGTCCATTGCAGGAATTGGCAATTTTGGCTTTGGAATGTCTGGCATCCAAGTCCACAATTTGCAGCATTTGGGCAATGAAAAGTTTGGAATCAGAGAACATTAAACTTGAAATCAAGGTGGATCCAAGCTTTACAGACTTGCCTGCAAGCCACAGCTTCTGTGCTCCTTCTTCTCCACCACCATCTTCTTCTTCCGAATTTACAATTCCACAAAAACCAAACTCCGATTACTGTAAAATCGCTTTAAACCCCAAGGCTACTGCGGAGGTGGCGTGA

Coding sequence (CDS)

ATGTCAGCACAATATGTTCTTATTTCATTCAATGTACAAAGGAGGAGTCCATTGCAGGAATTGGCAATTTTGGCTTTGGAATGTCTGGCATCCAAGTCCACAATTTGCAGCATTTGGGCAATGAAAAGTTTGGAATCAGAGAACATTAAACTTGAAATCAAGGTGGATCCAAGCTTTACAGACTTGCCTGCAAGCCACAGCTTCTGTGCTCCTTCTTCTCCACCACCATCTTCTTCTTCCGAATTTACAATTCCACAAAAACCAAACTCCGATTACTGTAAAATCGCTTTAAACCCCAAGGCTACTGCGGAGGTGGCGTGA

Protein sequence

MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFTDLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA
Homology
[Close]
BLAST of CsaV3_1G009600 vs. NCBI nr
Match: KGN64405.1 (hypothetical protein Csa_1G050440 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 4.7e-50
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT 60
           MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT
Sbjct: 1   MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT 60

Query: 61  DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA 107
           DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA
Sbjct: 61  DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA 106

[Close]
BLAST of CsaV3_1G009600 vs. TrEMBL
Match: tr|A0A0A0LR63|A0A0A0LR63_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050440 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.1e-50
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT 60
           MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT
Sbjct: 1   MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT 60

Query: 61  DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA 107
           DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA
Sbjct: 61  DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA 106

The following BLAST results are available for this feature:
BLAST of CsaV3_1G009600 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64405.14.7e-50100.00hypothetical protein Csa_1G050440 [Cucumis sativus][more]
BLAST of CsaV3_1G009600 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G009600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G009600 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LR63|A0A0A0LR63_CUCSA3.1e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050440 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G009600.1CsaV3_1G009600.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..87

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G009600CSPI01G09490Wild cucumber (PI 183967)cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G009600Wax gourdcucwgoB035
CsaV3_1G009600Cucumber (Chinese Long) v3cuccucB003
CsaV3_1G009600Cucumber (Chinese Long) v3cuccucB010
CsaV3_1G009600Silver-seed gourdcarcucB0397
CsaV3_1G009600Silver-seed gourdcarcucB0529
CsaV3_1G009600Silver-seed gourdcarcucB1046
CsaV3_1G009600Cucumber (Gy14) v2cgybcucB002
CsaV3_1G009600Cucumber (Gy14) v2cgybcucB011
CsaV3_1G009600Cucumber (Gy14) v1cgycucB237
CsaV3_1G009600Cucumber (Gy14) v1cgycucB592
CsaV3_1G009600Cucurbita maxima (Rimu)cmacucB0078
CsaV3_1G009600Cucurbita maxima (Rimu)cmacucB0124
CsaV3_1G009600Cucurbita maxima (Rimu)cmacucB0235
CsaV3_1G009600Cucurbita maxima (Rimu)cmacucB0474
CsaV3_1G009600Cucurbita moschata (Rifu)cmocucB0066
CsaV3_1G009600Cucurbita moschata (Rifu)cmocucB0110
CsaV3_1G009600Cucurbita moschata (Rifu)cmocucB0222
CsaV3_1G009600Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G009600Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G009600Cucurbita pepo (Zucchini)cpecucB0439
CsaV3_1G009600Cucurbita pepo (Zucchini)cpecucB0634
CsaV3_1G009600Cucurbita pepo (Zucchini)cpecucB0808
CsaV3_1G009600Wild cucumber (PI 183967)cpicucB015
CsaV3_1G009600Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G009600Bottle gourd (USVL1VR-Ls)cuclsiB077
CsaV3_1G009600Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G009600Melon (DHL92) v3.5.1cucmeB051
CsaV3_1G009600Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G009600Melon (DHL92) v3.6.1cucmedB048
CsaV3_1G009600Watermelon (Charleston Gray)cucwcgB038
CsaV3_1G009600Watermelon (Charleston Gray)cucwcgB080
CsaV3_1G009600Watermelon (97103) v1cucwmB013
CsaV3_1G009600Watermelon (97103) v1cucwmB098
CsaV3_1G009600Watermelon (97103) v2cucwmbB030
CsaV3_1G009600Watermelon (97103) v2cucwmbB071