CSPI01G09490 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G09490
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 5949312 .. 5949724 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGCACAATATGTTCTTATTTCATTCAATGTACAAAGGAGGAGTCCATTGCAGGAATTGGCAATTTTGGCTTTGGAATGTCTGGCATCCAAGTCCACAATTTGCAGCATTTGGGCAATGAAAAGTTTGGAATCAGAGAACATAAAACTTGAAATCAAGGTGGATCCAAGCTTTACAGACTTGCCTGCAAGCCAGTATATTAAAAAACGGGAGCTTGACATTAGTAGACCAAAAATCTCGGGTGGAAGCTCTGAAATTATGTTCCTCCCAAGTTCCAATCTTCTAGCAGCTTCTGTGCTCCTTCTTCTCCACCACCATCTTCTTCTTCCGAATTTACAATTCCACAAAAACCAAACTCCGATTACTGTAAAATCGCTTTAAACCCCAAGGCTACTGCGGAGGTGGCGTGA

mRNA sequence

ATGTCAGCACAATATGTTCTTATTTCATTCAATGTACAAAGGAGGAGTCCATTGCAGGAATTGGCAATTTTGGCTTTGGAATGTCTGGCATCCAAGTCCACAATTTGCAGCATTTGGGCAATGAAAAGTTTGGAATCAGAGAACATAAAACTTGAAATCAAGGTGGATCCAAGCTTTACAGACTTGCCTGCAAGCCACAGCTTCTGTGCTCCTTCTTCTCCACCACCATCTTCTTCTTCCGAATTTACAATTCCACAAAAACCAAACTCCGATTACTGTAAAATCGCTTTAAACCCCAAGGCTACTGCGGAGGTGGCGTGA

Coding sequence (CDS)

ATGTCAGCACAATATGTTCTTATTTCATTCAATGTACAAAGGAGGAGTCCATTGCAGGAATTGGCAATTTTGGCTTTGGAATGTCTGGCATCCAAGTCCACAATTTGCAGCATTTGGGCAATGAAAAGTTTGGAATCAGAGAACATAAAACTTGAAATCAAGGTGGATCCAAGCTTTACAGACTTGCCTGCAAGCCACAGCTTCTGTGCTCCTTCTTCTCCACCACCATCTTCTTCTTCCGAATTTACAATTCCACAAAAACCAAACTCCGATTACTGTAAAATCGCTTTAAACCCCAAGGCTACTGCGGAGGTGGCGTGA
Homology
[Close]
BLAST of CSPI01G09490 vs. TrEMBL
Match: A0A0A0LR63_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050440 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-50
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT 60
           MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT
Sbjct: 1   MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT 60

Query: 61  DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA 107
           DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA
Sbjct: 61  DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA 106

[Close]
BLAST of CSPI01G09490 vs. NCBI nr
Match: gi|700209309|gb|KGN64405.1| (hypothetical protein Csa_1G050440 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 2.4e-50
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT 60
           MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT
Sbjct: 1   MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT 60

Query: 61  DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA 107
           DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA
Sbjct: 61  DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA 106

The following BLAST results are available for this feature:
BLAST of CSPI01G09490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G09490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LR63_CUCSA1.7e-50100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050440 PE=4 SV=1[more]
BLAST of CSPI01G09490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G09490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209309|gb|KGN64405.1|2.4e-50100.00hypothetical protein Csa_1G050440 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G09490.1CSPI01G09490.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G09490Csa1G050440Cucumber (Chinese Long) v2cpicuB000
CSPI01G09490CsaV3_1G009600Cucumber (Chinese Long) v3cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G09490Silver-seed gourdcarcpiB0398
CSPI01G09490Silver-seed gourdcarcpiB0531
CSPI01G09490Silver-seed gourdcarcpiB1041
CSPI01G09490Cucumber (Chinese Long) v3cpicucB014
CSPI01G09490Cucumber (Chinese Long) v3cpicucB022
CSPI01G09490Watermelon (97103) v2cpiwmbB032
CSPI01G09490Watermelon (97103) v2cpiwmbB072
CSPI01G09490Wax gourdcpiwgoB032
CSPI01G09490Wild cucumber (PI 183967)cpicpiB003
CSPI01G09490Wild cucumber (PI 183967)cpicpiB008
CSPI01G09490Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G09490Cucumber (Gy14) v1cgycpiB230
CSPI01G09490Cucumber (Gy14) v1cgycpiB576
CSPI01G09490Cucurbita maxima (Rimu)cmacpiB063
CSPI01G09490Cucurbita maxima (Rimu)cmacpiB103
CSPI01G09490Cucurbita maxima (Rimu)cmacpiB206
CSPI01G09490Cucurbita maxima (Rimu)cmacpiB401
CSPI01G09490Cucurbita moschata (Rifu)cmocpiB056
CSPI01G09490Cucurbita moschata (Rifu)cmocpiB098
CSPI01G09490Cucurbita moschata (Rifu)cmocpiB193
CSPI01G09490Cucurbita moschata (Rifu)cmocpiB383
CSPI01G09490Cucumber (Chinese Long) v2cpicuB010
CSPI01G09490Melon (DHL92) v3.5.1cpimeB052
CSPI01G09490Melon (DHL92) v3.5.1cpimeB024
CSPI01G09490Watermelon (Charleston Gray)cpiwcgB038
CSPI01G09490Watermelon (Charleston Gray)cpiwcgB075
CSPI01G09490Watermelon (97103) v1cpiwmB010
CSPI01G09490Watermelon (97103) v1cpiwmB094
CSPI01G09490Cucurbita pepo (Zucchini)cpecpiB359
CSPI01G09490Cucurbita pepo (Zucchini)cpecpiB517
CSPI01G09490Cucurbita pepo (Zucchini)cpecpiB652
CSPI01G09490Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G09490Bottle gourd (USVL1VR-Ls)cpilsiB068
CSPI01G09490Melon (DHL92) v3.6.1cpimedB023
CSPI01G09490Melon (DHL92) v3.6.1cpimedB046
CSPI01G09490Cucumber (Gy14) v2cgybcpiB001
CSPI01G09490Cucumber (Gy14) v2cgybcpiB012
CSPI01G09490Cucumber (Gy14) v2cgybcpiB052