Csa1G050440 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G050440
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 5924268 .. 5924680 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGCACAATATGTTCTTATTTCATTCAATGTACAAAGGAGGAGTCCATTGCAGGAATTGGCAATTTTGGCTTTGGAATGTCTGGCATCCAAGTCCACAATTTGCAGCATTTGGGCAATGAAAAGTTTGGAATCAGAGAACATTAAACTTGAAATCAAGGTGGATCCAAGCTTTACAGACTTGCCTGCAAGCCAGTATATTAAAAAACGGGAGCTTGACATTAGTAGACCAAAAATCTCGGGTGGAAGCTCTGAAATTATGTTCCTCCCAAGTTCCAATCTTCTAGCAGCTTCTGTGCTCCTTCTTCTCCACCACCATCTTCTTCTTCCGAATTTACAATTCCACAAAAACCAAACTCCGATTACTGTAAAATCGCTTTAAACCCCAAGGCTACTGCGGAGGTGGCGTGA

mRNA sequence

ATGTCAGCACAATATGTTCTTATTTCATTCAATGTACAAAGGAGGAGTCCATTGCAGGAATTGGCAATTTTGGCTTTGGAATGTCTGGCATCCAAGTCCACAATTTGCAGCATTTGGGCAATGAAAAGTTTGGAATCAGAGAACATTAAACTTGAAATCAAGGTGGATCCAAGCTTTACAGACTTGCCTGCAAGCCACAGCTTCTGTGCTCCTTCTTCTCCACCACCATCTTCTTCTTCCGAATTTACAATTCCACAAAAACCAAACTCCGATTACTGTAAAATCGCTTTAAACCCCAAGGCTACTGCGGAGGTGGCGTGA

Coding sequence (CDS)

ATGTCAGCACAATATGTTCTTATTTCATTCAATGTACAAAGGAGGAGTCCATTGCAGGAATTGGCAATTTTGGCTTTGGAATGTCTGGCATCCAAGTCCACAATTTGCAGCATTTGGGCAATGAAAAGTTTGGAATCAGAGAACATTAAACTTGAAATCAAGGTGGATCCAAGCTTTACAGACTTGCCTGCAAGCCACAGCTTCTGTGCTCCTTCTTCTCCACCACCATCTTCTTCTTCCGAATTTACAATTCCACAAAAACCAAACTCCGATTACTGTAAAATCGCTTTAAACCCCAAGGCTACTGCGGAGGTGGCGTGA

Protein sequence

MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFTDLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA*
Homology
[Close]
BLAST of Csa1G050440 vs. TrEMBL
Match: A0A0A0LR63_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050440 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.0e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT 60
           MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT
Sbjct: 1   MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT 60

Query: 61  DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA 107
           DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA
Sbjct: 61  DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA 106

[Close]
BLAST of Csa1G050440 vs. NCBI nr
Match: gi|700209309|gb|KGN64405.1| (hypothetical protein Csa_1G050440 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 4.4e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT 60
           MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT
Sbjct: 1   MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT 60

Query: 61  DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA 107
           DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA
Sbjct: 61  DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA 106

The following BLAST results are available for this feature:
BLAST of Csa1G050440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LR63_CUCSA3.0e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050440 PE=4 SV=1[more]
BLAST of Csa1G050440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209309|gb|KGN64405.1|4.4e-52100.00hypothetical protein Csa_1G050440 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU176341cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G050440.1Csa1G050440.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU176341CU176341transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G050440CSPI01G09490Wild cucumber (PI 183967)cpicuB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G050440Watermelon (97103) v1cuwmB008
Csa1G050440Watermelon (97103) v1cuwmB088
Csa1G050440Cucurbita pepo (Zucchini)cpecuB029
Csa1G050440Cucurbita pepo (Zucchini)cpecuB359
Csa1G050440Cucurbita pepo (Zucchini)cpecuB515
Csa1G050440Cucurbita pepo (Zucchini)cpecuB648
Csa1G050440Bottle gourd (USVL1VR-Ls)culsiB067
Csa1G050440Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G050440Cucumber (Gy14) v2cgybcuB001
Csa1G050440Cucumber (Gy14) v2cgybcuB012
Csa1G050440Melon (DHL92) v3.6.1cumedB022
Csa1G050440Melon (DHL92) v3.6.1cumedB043
Csa1G050440Silver-seed gourdcarcuB0393
Csa1G050440Silver-seed gourdcarcuB0523
Csa1G050440Silver-seed gourdcarcuB1017
Csa1G050440Watermelon (97103) v2cuwmbB032
Csa1G050440Watermelon (97103) v2cuwmbB076
Csa1G050440Wax gourdcuwgoB032
Csa1G050440Cucumber (Chinese Long) v2cucuB002
Csa1G050440Cucumber (Gy14) v1cgycuB225
Csa1G050440Cucumber (Gy14) v1cgycuB547
Csa1G050440Cucurbita maxima (Rimu)cmacuB071
Csa1G050440Cucurbita maxima (Rimu)cmacuB112
Csa1G050440Cucurbita maxima (Rimu)cmacuB204
Csa1G050440Cucurbita maxima (Rimu)cmacuB397
Csa1G050440Cucurbita moschata (Rifu)cmocuB061
Csa1G050440Cucurbita moschata (Rifu)cmocuB098
Csa1G050440Cucurbita moschata (Rifu)cmocuB189
Csa1G050440Cucurbita moschata (Rifu)cmocuB380
Csa1G050440Melon (DHL92) v3.5.1cumeB027
Csa1G050440Melon (DHL92) v3.5.1cumeB051
Csa1G050440Watermelon (Charleston Gray)cuwcgB035
Csa1G050440Watermelon (Charleston Gray)cuwcgB075
Csa1G050440Watermelon (Charleston Gray)cuwcgB089