CsaV3_1G009600.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G009600.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 5958843 .. 5959255 (+)
Sequence length321
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGCACAATATGTTCTTATTTCATTCAATGTACAAAGGAGGAGTCCATTGCAGGAATTGGCAATTTTGGCTTTGGAATGTCTGGCATCCAAGTCCACAATTTGCAGCATTTGGGCAATGAAAAGTTTGGAATCAGAGAACATTAAACTTGAAATCAAGGTGGATCCAAGCTTTACAGACTTGCCTGCAAGCCAGTATATTAAAAAACGGGAGCTTGACATTAGTAGACCAAAAATCTCGGGTGGAAGCTCTGAAATTATGTTCCTCCCAAGTTCCAATCTTCTAGCAGCTTCTGTGCTCCTTCTTCTCCACCACCATCTTCTTCTTCCGAATTTACAATTCCACAAAAACCAAACTCCGATTACTGTAAAATCGCTTTAAACCCCAAGGCTACTGCGGAGGTGGCGTGA

mRNA sequence

ATGTCAGCACAATATGTTCTTATTTCATTCAATGTACAAAGGAGGAGTCCATTGCAGGAATTGGCAATTTTGGCTTTGGAATGTCTGGCATCCAAGTCCACAATTTGCAGCATTTGGGCAATGAAAAGTTTGGAATCAGAGAACATTAAACTTGAAATCAAGGTGGATCCAAGCTTTACAGACTTGCCTGCAAGCCACAGCTTCTGTGCTCCTTCTTCTCCACCACCATCTTCTTCTTCCGAATTTACAATTCCACAAAAACCAAACTCCGATTACTGTAAAATCGCTTTAAACCCCAAGGCTACTGCGGAGGTGGCGTGA

Coding sequence (CDS)

ATGTCAGCACAATATGTTCTTATTTCATTCAATGTACAAAGGAGGAGTCCATTGCAGGAATTGGCAATTTTGGCTTTGGAATGTCTGGCATCCAAGTCCACAATTTGCAGCATTTGGGCAATGAAAAGTTTGGAATCAGAGAACATTAAACTTGAAATCAAGGTGGATCCAAGCTTTACAGACTTGCCTGCAAGCCACAGCTTCTGTGCTCCTTCTTCTCCACCACCATCTTCTTCTTCCGAATTTACAATTCCACAAAAACCAAACTCCGATTACTGTAAAATCGCTTTAAACCCCAAGGCTACTGCGGAGGTGGCGTGA

Protein sequence

MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFTDLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA
Homology
[Close]
BLAST of CsaV3_1G009600.1 vs. NCBI nr
Match: KGN64405.1 (hypothetical protein Csa_1G050440 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 4.7e-50
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT 60
           MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT
Sbjct: 1   MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT 60

Query: 61  DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA 107
           DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA
Sbjct: 61  DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA 106

[Close]
BLAST of CsaV3_1G009600.1 vs. TrEMBL
Match: tr|A0A0A0LR63|A0A0A0LR63_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050440 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.1e-50
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT 60
           MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT
Sbjct: 1   MSAQYVLISFNVQRRSPLQELAILALECLASKSTICSIWAMKSLESENIKLEIKVDPSFT 60

Query: 61  DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA 107
           DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA
Sbjct: 61  DLPASHSFCAPSSPPPSSSSEFTIPQKPNSDYCKIALNPKATAEVA 106

The following BLAST results are available for this feature:
BLAST of CsaV3_1G009600.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64405.14.7e-50100.00hypothetical protein Csa_1G050440 [Cucumis sativus][more]
BLAST of CsaV3_1G009600.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G009600.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G009600.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LR63|A0A0A0LR63_CUCSA3.1e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050440 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G009600CsaV3_1G009600gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G009600.1.exon1CsaV3_1G009600.1.exon1exon
CsaV3_1G009600.1.exon2CsaV3_1G009600.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G009600.1.cds1CsaV3_1G009600.1.cds1CDS
CsaV3_1G009600.1.cds2CsaV3_1G009600.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G009600.1CsaV3_1G009600.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..87