CsaV3_1G007510 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G007510
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	DNA-binding protein RHL1 isoform X2
Location	chr1 : 4768058 .. 4776745 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAAAATCTATATTTACAATCTTGTAATAAATTTGTTATAGAAAAATAAGAACGAAGAATTGAGAAAAAGAAAAAAATAATGAAAGAGGAAACAAGAGGGCAGGGATCCCGGAGAGTAAACTGCAGTTGGTAGCTGACTACAAGCAACAGAAATGGCGCGAGGATCGTCTTCAAAGAAGGACGAAGCAAAAGGAGAAATCAACCCAGAGATTGCAGAGCGAAAGCGGCTCAAGAAGCTCGCATTCTCCAATCACATACTTTCAGAAACCCAGGCAAGGCCCCAGGCTTATCTGAGCCCTTCAGCCACGGTTCTGAAGCACCATGGCAAAGACATTGTCAAGAAATCACAGCGAAAGAACAGGTTCCTCTTCTCCTTTTCAGGCTTGCTTGCTCCCGTTAGTGGTGGCAAGATTGGCGAGCTCAAGGATTTATCAACCAAGAATCCCATTCTCTATCTCGATTTTCCTCAGGTTCGTCCGTTCTTCCTTTCTCTCAATCGCCTTTCTGTTTTTCACTCCTCTGAATTTCTTCAGTTTAGTGTCCGGGTTCGTCTCTTCTCCTTTAGAATAATTTTTGTAATTGTTTGTCATCTTCATCCAGTCCTAAGTATTTGATAGATAAACCCATATCACACTCGAGGTTTTTTTTCTATGTTTTTTATTTACATACTTCTTGCCTTCTGGATTCTACAAGATAGACTGAGAATAGTACTTATATATTTTTTTTGTGGGGAATACAACTTGGAAGGATAGATCTCAGAAAAGACTAGGACAGTATTGGATGAGATAACAGCAACCCAATGGCTAGTTTTTTAAGGGTAAACCAATATATTTGTGGGGGTGTGCTGCTCGGGCTTTTTTTGGGGAGGTCTCGCTGGAAAAGAACTGTAGAACCTTCGTAGAGGAAGCTGCAAATTTTATTTCCACTTGGTGGTGGCTTAGCAACACCATTCTTTGTAATTGTTTAGGGTTTAGGGGTTTGTCAATTGTGCAAAATTAAAGGACAAGCTTTCCACCACAAAAGAACCAAGGCTAAATGATTTTTGTTTTGATATATAAATAATTTGGACTCTGTGAATTTTGTTTTTTGATAGACAAGGTATGATTAATATTTGAGTTTTTTGGTTGATTTGGAGTCCATGGAGCTGTTATCAACACCCATCAATCATTTATCATCATTATATAGTTATTAGAAGTTGATGAAATTAATGTACTATCTAATTAATTATTATAGTTTCTACTAAACTCATATGTCCAGTGATATTTTTTCTCATTAAATGAGATGCTTTGCTTAGTATTTGAGTGCATAGCATTAGAGCGAGTTAAATACGTGGAAATTGTTATTGTTATTGGCTTATTATTTATTTCTACCTGAAAAATGGATGCGTAAGCATATTGTTTGTATGCACAAGCTAACCTGGACACCCACAAATTATTTTCATTCCCCGAATGCCAATGTTGATTTTATGTGGTCATGAAGCATCTAGTGGTGGAATTTTTCTGATTGCTATTTTGTTTGCTTTCCAGGGGCGTATGAAGTTGTTTGGAACTATCATGTATCCGAAGAACAGATATTTAACTTTGCAGTTTTCTAGAGGTGGAAAGAATGTGACGTGTGAAGATTGTTTTGATAATATGGTTAGTCCTTTTGCTTCTGTGTTTCATTCCTTCTATCTTGGGGACTTTATTTTTGTTCATTTCATCTAGTATTTCATTAAAAGTGCAGTTATGACTTGTAAAACCCGTAGCACAATAAATGATGTTTGTAGCTGGTTTCAATTCTTAGTATGATCTGAATGCTTCTTTATGTACTGCTTCCGAAATTCATCTTCGCCGGTTTAAGCCGTCATTTTTTGTGATTTTTCTTTCAAAGATAAAGCAAAATCTATGGTGCAATACAAATTGAGGTTTTCTAAGCCTATTGTCGGAGACCTGTATTTGGGCCGATCCAAAATGATTCTATCATTTTTGTATCTGCAATTCAATATATATGAGCATAGATAGATACATAGACATATGTACTTACCCTTCTTTCTGTTAATTTTTTTAGTAAAACTTTTTATACTTAAATGGTCGATTCTTTTATTCGTGTTATTTTCCACCTTTCAGAATGAAAACAGAGAAATGCTTCATTATCATCTCAATTGCATTTTGAGCAAACAAGTCAAGAATTGGCCACAGCTTGTGAACATCTAGCAAGGTCTTGTCTTAAATGATATGTTTGCCCGATAAAAGTGTGGCAAGAACAATTATCCACCAACAGGAAAAGGAATAACAATCTGTTTAAGTTATCCTGGTGTGTTTGTTAAATGTGATTCATGAAGATAGATACTAGATGGTGTCATTTTCTGTTCCCTGCCAATATTGATCATCTTGAAATTTAAGAACATTTGTTCAGATTCACTATGTTGAATGATGTTCTTAATTTAATCTCTGTACTGTTCTTGGCACTTCTTGTTACTTAAGACATATGACCTTTAAGCATGTACATTATGAATCAACTATACTTTTCTCTGACTGCAGATTGTCTTTTCTGATGCATGGTGGATTGGAACAAAAGATGAAAATCCAGAGGAGGCGTGTCTTGATTTTCCTAAAGATTTGACCATGGTGAGTTTCTTGATAAATTTTAGGCCCTTAAAATCTATGTATTTTTTCTCTAGTACCTCTACATTTGTATGTATAATTCCTGCGAGCATCTCTTTTCTCAAGATCATTTATGAAGCAGAATAATGGAAATGCATCCCTCTAGTCATAGTCTAATTTATGTTGTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTTTGCTAACTCCCAGTGGTTGCATGTCAGGGACAATGTGGAGAATATGACTTTAACGGTGGTGCTGGTGTTACTAGTACGAGTGGGGTTGCTGGTGTTACCAGTACGAGTAAGCAGAGTGTTCAAAGGAAGGGAATCAATCCTGCTGCAGAAAATTCCTTTAAAGGAGAGCATGGAGATGATTTAGTGGGCCTTGAAGCCAGCGTGACAAATTCAATAAAGACTACGCCAGTTAGACATTCTGAAAGATCTGCCAGAAAAGTATTCAAGTATTACACTTTGCATGTACTGTTACCATGTAGTTCTTATCTTATTCTCAACAAGGCAGAAACCAATAGGGTTTCTGGTCAAATAGTATTTTGCATCAATTGTCTTATTTATCAACAATCCGTACCTTGATTGGTAGAAAAATTTGCTGCATGACCATGAGTATAGATACATATTTAACACTTGATTTATGATTTTAAAAGTTTTAACTTTAAAATTTGTTTTTCAAAGAATCCACACGTGTTTAGCTTGTCTGGGGTTTTCATAGCCATAGGTGGCCTCTGTTTCAGAGAGAGCATTCTGTGAGTTTGTGTTGCTGTCTTCTGAGAGGTTAGCTTGGGAAAAAATTTTCTTCAAGACATGGAGAACTCTTGAAACGAAGGTGATGGTTCTTAAGGAAAGTACAAAAAATTTACCATGCGTTCGAGAGGCTCACTTTACTCTCTGTACCATTTCTAAAATATGTCTATCCCCATGTCACCCAATCTATATTATTTATGAACTCTATACCCTAAAAAAGTTCATTAACCAATTATTAGTCTAACATTACTAATTTTCCTAACAGCTTATTTGTTAAATATTTTTTCAATTATTTTATTTTCTGTGATTTTAGCTAATTGGGGAGCCTATTGTAACTTTGACTTGTGGGAAGCTTTTGCCTTGGGTTATGCATTTTGTTTATGAATGAAATTAGTTTCCGTAAAAAGAAATGTCCACATTCTTGGAGAAAGTGCCACCAGTTTGTACCATTGCGGTGTCATTACATCTGTATCTACTGTCTTCTATTATTCCCAAACATATCAGGATCAATTTACTTTATGGAAATTGGCAGAAGCAAACTAGATGTTAGGAGGCCATCAGTACAAATACCATTTTCAATGATGGCATCGCCCCTCTCAAGTAAAAACAATATACATATATTGTTAGTAGTAACATTTTGAATTAATGAAACCAGCACCGAATTTGTCCTAGATGTTTTTCTAGCTCAACTACCTAAAGTCCATCCGGAATTTCAGATTCTTTCACTTGATCAGCTTGGCCGTGGTAGTTTCTATACAGTACATTGGTTTTTATTTATAATTCTAATAACCGGTGCAAACATGAAACAAACAACGGAACATTGAGTCCATCTTTTGTCATGTTGGTTGACAAATAGTCTCTCAACAAATTCAGATCAAATGTGAGTTAACGCAACTTCTTTAATCTCATATATTCCCATTCATGTTGAGGCTTATGTCAGTTAACTTTATTGTGATCTGTCCCGAAGAAATAATTTTATTATTATTATTATTTTTTTTCTTGTTAAGTTTTGCAGAGGCTTCTTCTGAGGATGAGTCTGCTGGCACGGACGCTGATTTGTCTGAAGGAGAAGAAAAAAATATTGTCATACATGAGCCTTCAATTGGAGATCATGCTAGTGAAAATATCCCATCTATGATTCTTGAGTAGTTTGTTTTAATTCATCCTCCGCAATTTTCTATTATTATTGATTGTCTTAAAATTTGTCTGCTGCTGTATGTTTCAATTCCTTAATTGATTACTACAGACGGAAGATATCTCTGTTGAATCTATAGATGAAGATGCTGTGAAAATTAAACCTCCTTTTCTTGAAGGAAATCAGACATCAATTTCTAAGGAAAAGAAAAGTTTTCGGGCTAAGGGAAGTGCTCAGAGTGATACTCGTGGACTTGTCCAGCCTACTTTACTTAGTTTGTTCAAGAAAGTGGAGGAGAAGGTAACATCCGAATACCTGTACTTAATATGTGGAAATAGGTTGCTGGCTTGGAATCCATTTACTGTTACATTTAGGGGCTTATTAAAACTAGTAGTTATTTTTCTTGATGCAAAAGGAAATGATCATTTAAAAACCAATGAAAGAACAAGCAAGAGCTGTTACAACGTAGCTATTGAGGAACCAAAAAAAAAAAATGCTCCTCAAACTATAAAACACTTGGCGAAGCAAAGGAAAGACATTTACCTCCCCTTTGGTTGTTAACAACGGTAATGATGTTTTACAAAAGTCAGTTAAAAAATGATCGTAATTCTAGAGAAAAGTATAAAGTGTGTTAGTTACTTACCTTTTACAGAGAATGTGAGACAACATGCTCTTAGAGAAGACAAAAAACATAGTAAAGAGATGCTATTAAAAAGAAAAGACCATCCGAGATTTTTTGAAAACACGATTGTTTCTTTCCATCTAAATTACCCAACAAATTACTGAAACTGCAAATTCCAAAAAGCTCTCAATCTTATACTAGCTAGTAACTCCTCCAAATTGTCCTATCCGAACAATGAACTTTATATCTTTAAGGCTTACATATATTTGAAATGAATGCTTATTGTTTTCAGAGGACACCAAGAAGTTCAAAGAGGTCTTCAGCTCCCAAAGGTTCTAATATTTTCCATTGATTTTATCATCACGACACGAGAATACTAAAGTAACACCAAATCTGCAAAATTGGTTGCCTACAGTTTCTACCCAAAAGATGCAGCTGTCTGGTTCAAAGCAAAAGATTGACCAGGTGATGACAAATCTTCATTTTTCAATCACGCCTTTTCTCCTGAAAACGACTAACAGATTATCATGTACTTTCAGGATGAAGGATCAAAGAAAAGGAGGGTTGTCCGGGGACAAGGTGATGCAATCTTTTATGATCTCTCCATTTACTTACTGCTTGTTGAAATCTCTAACAGCTTAGATATGACAATATTGGCTTGCTGAATTTGTCATCTCTCTTGTACCCTGGGTTCTCATGGAAATTATATCAGGATTGCTCGAGAAATCATACAACTTCTGTAGTAGATCTAATAGAATATTGACTCCCATTTTGCAAGATACATGTGCATTAGTATTTGGACTAATTTTCTGTGTGCTATATTTGTAGTCGGTTTATGCAAATTTGGGTTCTGGATTACCTGGTGTAGCTTTGTAATCATGTTCAGTTGACTGTGTTTATATGGTATGTTTACATGGTTGGTTGATGCATATTAATATTAGCTTGAACGTGCAGGAGGAAAAGCCCAGAAGAAGGATACAGAATATGAGGTACTGGTACCATTTTTACAAATTGTGCTTTTAAAAGATTTGCTGCTTTATTAACCTCAGGATTTCTTATGTGCACTATTCCAACTTGGAGTGGACATGCTTCCCAAAGTTATTATATAACTGGACAAATTTCCATTACTTATAGCTCCAACAGCTAGAGGTATCTTAAAAGCAATCAACTTGAGCATGTTTGGTATACCAACTGCAAAGTGCTTTAAAATGCACTTTTAAACATTTTAAGCACTTGAAAGTCATTCCAAAAACTTTTAGCTGCGGATGAAAATGTTTCATCACAAGTAATACTTTTTGCTTCCTAAGTCTCAAAGTCTTACGTTTTTTTAAAAAAATAATATTTTGTTATTTATTTTTTCAATGAAATTTTATGTGTTAACACATGATATTTCTGAAATGGTCATCGTTAGTTTTTGCTTGGTGACACTAACAAAAAACCTTAAATAGTTTTATGTTAATTATAAAAAGGCCCTTGGCATTCTTCAAACTTGAAAGAATTTCAACCAGCAATTCCTTCTCATGTGTCTCATCTTACAAGTGAGACCTTTTAGAATTTAGTTTAAAAGGATGTTTGCTTCTGTGTTTTGGGTCTCATCCAAATTTAGTTCATGACTTTCAAATGTTTTAATAGACCATAAATTAATTCTGATTGTTAGTTTCAGACTGATATTTATTCAATTCGGTTCCATAATAATGTGAATATGTTTCCAATAGAGAGGAAAGACTAATTAAGGGGGTTTTTTCCCTTCGGAAGTAACAATAAACTAACTGTAGGCTAATTTAAGATTTATTGGACATTTCTAACTGGTGAGATTAAAATAAAACGAGGACCAAAATATTGTGGTGAACTAGTATTATAACCTAAATTTTTATATGCTCTGAATTGCAAGTACATGTAGTTTGTTTCTATTTACTACTCTCAAGTCACGATTCAGTGCGGGATGAAATGGTTGACGGTAGATATCACTGTAGACTTTATTTATCTAAATCTTGTAGGTTGAAGATGAGATCGAAGATTTGTCGAGCTCTCAAGAGGTGAGTGTTCAATGGCTATTTTATAACCTACATACTTCCATGATTTCTTAGGATATTGGACTGGAAGTTAGTGGGCCCTAGGTTTGTAGTCATTTTGGAGTCTGATGAAAATATTTGACTGAACTACTCCTTTGCTATTACATATAATCAATGTCTCATTTTCCTTTGACTATTAATTTTTTGGCTTAGTTACCCTTTAAAAACTCTCTCTCCCTTGTGCCCTACACCATGGTTGTTAGAAAGTTGTCATTTACTGTAATTTTTTATTTCTATGTAATATTAAGAAAAAAACAGGCTTTCCATTTTTTTTAGAAACAACAGCTTTCATGGAGAAAGAACGAAAGTATACATGAGCATATGAAAAAGAAATAACTCAGCCCACAAAAAAAGCAATACCCGCTCCAAGGAGTTCTTAACTTTGCAAGTTAACACCTATAAAATAGCTAAAACCGAAGTGTACGAGGAAACATGGAAGCAAACAAGGGACCAAATTTCACTATGTTCCTTTTCCACCCTTCTAAAGATCCTACCATTCTGCTCTGCCCATAAAACCCACGAGATCCCACACACCTCACCTAACCTCAAAAGTGATCTTTTTCCCCACGAGGCGAATTGAGGAGGAACGAGATAATGCAATCCTAATCCTCAACTCCTCAATGATTCTTATCAAACTCTGTATGGAATATCATGATTCTTTATTAACTCCTCAATCATAGCACTAATGGTCCCTCTAGCAAACAAATGAACAACTAAACATAGTTCTTGATCGTCATCACCAATAAGCGTTCACATTGTCAAACTTTTCAAATGCAGGTGATTAAATTAAAGCGTTTGAATAATTCAGCAATTAAACTTTAAATGGGAGTCAAAAGATGAAATCAAAGTGAACTTATCATTTAGGGACCAGATGGATAGTTTAACTAGAACACATTCCTTTTAGCTTTCATAAATATTGATTATGATCTTCCACATTTTTGCTCACAAGTTCATTTGTCATCCAGGACACTGATGAAGATTGGACAAGTTGAGGTTGTTACCATTCTAACAATGGTAAGCCACACCAGCAGCTCGAATTGCATCATTGCAGGGATTATATTCAGAATTCAGAATGCTCGAATTGCTCTACCAGGTTCTTTGATGCCGCTGGCTAATTGAAATTAAAGAAATTTGACCATAAGATGATATTGAAAAGTTTTTATCATAAAGTTAGGCAATGTAAAATTATGTTTTTTATATACTTGAGAGATCAACTGTTACACTTCCTAGAAACCAGACCAAGTTTAAGGTTAAAAATATTCACAAGATTTTATGCAGATTGTTGTGCCTTTGGATAATATGATCCAATTTGTTACCATTGTTTCTAGGCTATTCTGGTATAGATAATAGATGTAACCAAATCTAAAAGTAGCTTGGTTGTTTGACATAAGAGATTATAGGCTCAAAATCCCATGCTACTTGTTAAACTCAGAAACACAAGTTGTGAATGTGAGCCCATCCTACTTGTTAAACTCAGGA

mRNA sequence

ATGGCGCGAGGATCGTCTTCAAAGAAGGACGAAGCAAAAGGAGAAATCAACCCAGAGATTGCAGAGCGAAAGCGGCTCAAGAAGCTCGCATTCTCCAATCACATACTTTCAGAAACCCAGGCAAGGCCCCAGGCTTATCTGAGCCCTTCAGCCACGGTTCTGAAGCACCATGGCAAAGACATTGTCAAGAAATCACAGCGAAAGAACAGGTTCCTCTTCTCCTTTTCAGGCTTGCTTGCTCCCGTTAGTGGTGGCAAGATTGGCGAGCTCAAGGATTTATCAACCAAGAATCCCATTCTCTATCTCGATTTTCCTCAGGGGCGTATGAAGTTGTTTGGAACTATCATGTATCCGAAGAACAGATATTTAACTTTGCAGTTTTCTAGAGGTGGAAAGAATGTGACGTGTGAAGATTGTTTTGATAATATGATTGTCTTTTCTGATGCATGGTGGATTGGAACAAAAGATGAAAATCCAGAGGAGGCGTGTCTTGATTTTCCTAAAGATTTGACCATGGGACAATGTGGAGAATATGACTTTAACGGTGGTGCTGGTGTTACTAGTACGAGTGGGGTTGCTGGTGTTACCAGTACGAGTAAGCAGAGTGTTCAAAGGAAGGGAATCAATCCTGCTGCAGAAAATTCCTTTAAAGGAGAGCATGGAGATGATTTAGTGGGCCTTGAAGCCAGCGTGACAAATTCAATAAAGACTACGCCAGTTAGACATTCTGAAAGATCTGCCAGAAAAGTATTCAATTTTGCAGAGGCTTCTTCTGAGGATGAGTCTGCTGGCACGGACGCTGATTTGTCTGAAGGAGAAGAAAAAAATATTGTCATACATGAGCCTTCAATTGGAGATCATGCTAGTGAAAAGACGGAAGATATCTCTGTTGAATCTATAGATGAAGATGCTGTGAAAATTAAACCTCCTTTTCTTGAAGGAAATCAGACATCAATTTCTAAGGAAAAGAAAAGTTTTCGGGCTAAGGGAAGTGCTCAGAGTGATACTCGTGGACTTGTCCAGCCTACTTTACTTAGTTTGTTCAAGAAAGTGGAGGAGAAGAGGACACCAAGAAGTTCAAAGAGGTCTTCAGCTCCCAAAGTTTCTACCCAAAAGATGCAGCTGTCTGGTTCAAAGCAAAAGATTGACCAGGATGAAGGATCAAAGAAAAGGAGGGTTGTCCGGGGACAAGGAGGAAAAGCCCAGAAGAAGGATACAGAATATGAGGTTGAAGATGAGATCGAAGATTTGTCGAGCTCTCAAGAGGACACTGATGAAGATTGGACAAGTTGA

Coding sequence (CDS)

ATGGCGCGAGGATCGTCTTCAAAGAAGGACGAAGCAAAAGGAGAAATCAACCCAGAGATTGCAGAGCGAAAGCGGCTCAAGAAGCTCGCATTCTCCAATCACATACTTTCAGAAACCCAGGCAAGGCCCCAGGCTTATCTGAGCCCTTCAGCCACGGTTCTGAAGCACCATGGCAAAGACATTGTCAAGAAATCACAGCGAAAGAACAGGTTCCTCTTCTCCTTTTCAGGCTTGCTTGCTCCCGTTAGTGGTGGCAAGATTGGCGAGCTCAAGGATTTATCAACCAAGAATCCCATTCTCTATCTCGATTTTCCTCAGGGGCGTATGAAGTTGTTTGGAACTATCATGTATCCGAAGAACAGATATTTAACTTTGCAGTTTTCTAGAGGTGGAAAGAATGTGACGTGTGAAGATTGTTTTGATAATATGATTGTCTTTTCTGATGCATGGTGGATTGGAACAAAAGATGAAAATCCAGAGGAGGCGTGTCTTGATTTTCCTAAAGATTTGACCATGGGACAATGTGGAGAATATGACTTTAACGGTGGTGCTGGTGTTACTAGTACGAGTGGGGTTGCTGGTGTTACCAGTACGAGTAAGCAGAGTGTTCAAAGGAAGGGAATCAATCCTGCTGCAGAAAATTCCTTTAAAGGAGAGCATGGAGATGATTTAGTGGGCCTTGAAGCCAGCGTGACAAATTCAATAAAGACTACGCCAGTTAGACATTCTGAAAGATCTGCCAGAAAAGTATTCAATTTTGCAGAGGCTTCTTCTGAGGATGAGTCTGCTGGCACGGACGCTGATTTGTCTGAAGGAGAAGAAAAAAATATTGTCATACATGAGCCTTCAATTGGAGATCATGCTAGTGAAAAGACGGAAGATATCTCTGTTGAATCTATAGATGAAGATGCTGTGAAAATTAAACCTCCTTTTCTTGAAGGAAATCAGACATCAATTTCTAAGGAAAAGAAAAGTTTTCGGGCTAAGGGAAGTGCTCAGAGTGATACTCGTGGACTTGTCCAGCCTACTTTACTTAGTTTGTTCAAGAAAGTGGAGGAGAAGAGGACACCAAGAAGTTCAAAGAGGTCTTCAGCTCCCAAAGTTTCTACCCAAAAGATGCAGCTGTCTGGTTCAAAGCAAAAGATTGACCAGGATGAAGGATCAAAGAAAAGGAGGGTTGTCCGGGGACAAGGAGGAAAAGCCCAGAAGAAGGATACAGAATATGAGGTTGAAGATGAGATCGAAGATTTGTCGAGCTCTCAAGAGGACACTGATGAAGATTGGACAAGTTGA

Protein sequence

MARGSSSKKDEAKGEINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHGKDIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYPKNRYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCGEYDFNGGAGVTSTSGVAGVTSTSKQSVQRKGINPAAENSFKGEHGDDLVGLEASVTNSIKTTPVRHSERSARKVFNFAEASSEDESAGTDADLSEGEEKNIVIHEPSIGDHASEKTEDISVESIDEDAVKIKPPFLEGNQTSISKEKKSFRAKGSAQSDTRGLVQPTLLSLFKKVEEKRTPRSSKRSSAPKVSTQKMQLSGSKQKIDQDEGSKKRRVVRGQGGKAQKKDTEYEVEDEIEDLSSSQEDTDEDWTS

Homology

[Close]

BLAST of CsaV3_1G007510 vs. NCBI nr
Match: XP_004137530.1 (PREDICTED: DNA-binding protein RHL1 [Cucumis sativus] >KGN64211.1 hypothetical protein Csa_1G043140 [Cucumis sativus])

HSP 1 Score: 801.2 bits (2068), Expect = 1.7e-228
Identity = 430/430 (100.00%), Postives = 430/430 (100.00%), Query Frame = 0


Query: 1   MARGSSSKKDEAKGEINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHGKD 60
           MARGSSSKKDEAKGEINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHGKD
Sbjct: 1   MARGSSSKKDEAKGEINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHGKD 60

Query: 61  IVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYPKN 120
           IVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYPKN
Sbjct: 61  IVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYPKN 120

Query: 121 RYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCGEYDF 180
           RYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCGEYDF
Sbjct: 121 RYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCGEYDF 180

Query: 181 NGGAGVXXXXXXXXXXXXXKQSVQRKGINPAAENSFKGEHGDDLVGLEASVTNSIKTTPV 240
           NGGAGVXXXXXXXXXXXXXKQSVQRKGINPAAENSFKGEHGDDLVGLEASVTNSIKTTPV
Sbjct: 181 NGGAGVXXXXXXXXXXXXXKQSVQRKGINPAAENSFKGEHGDDLVGLEASVTNSIKTTPV 240

Query: 241 RHSERSARKVFNFAEASSEDESAGTDADLSEGEEKNIVIHEPSIGDHASEKTEDISVESI 300
           RHSERSARKVFNFAEASSEDESAGTDADLSEGEEKNIVIHEPSIGDHASEKTEDISVESI
Sbjct: 241 RHSERSARKVFNFAEASSEDESAGTDADLSEGEEKNIVIHEPSIGDHASEKTEDISVESI 300

Query: 301 DEDAVKIKPPFLEGNQTSISKEKKSFRAKGSAQSDTRGLVQPTLLSLFKKVEEKRTPRSS 360
           DEDAVKIKPPFLEGNQTSISKEKKSFRAKGSAQSDTRGLVQPTLLSLFKKVEEKRTPRSS
Sbjct: 301 DEDAVKIKPPFLEGNQTSISKEKKSFRAKGSAQSDTRGLVQPTLLSLFKKVEEKRTPRSS 360

Query: 361 KRSSAPKVSTQKMQLSGSKQKIDQDEGSKKRRVVRGQGGKAQKKDTEYEVEDEIEDLSSS 420
           KRSSAPKVSTQKMQLSGSKQKIDQDEGSKKRRVVRGQGGKAQKKDTEYEVEDEIEDLSSS
Sbjct: 361 KRSSAPKVSTQKMQLSGSKQKIDQDEGSKKRRVVRGQGGKAQKKDTEYEVEDEIEDLSSS 420

Query: 421 QEDTDEDWTS 431
           QEDTDEDWTS
Sbjct: 421 QEDTDEDWTS 430

[Close]

BLAST of CsaV3_1G007510 vs. NCBI nr
Match: XP_008467323.1 (PREDICTED: DNA-binding protein RHL1 isoform X2 [Cucumis melo])

HSP 1 Score: 758.4 bits (1957), Expect = 1.3e-215
Identity = 395/431 (91.65%), Postives = 408/431 (94.66%), Query Frame = 0


Query: 1   MARG-SSSKKDEAKGEINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHGK 60
           MARG SSSKKDEAKGEINPEI ERKRLKKLAFSN+ILSETQA+PQAYLSPSATVLKHHGK
Sbjct: 1   MARGSSSSKKDEAKGEINPEIGERKRLKKLAFSNNILSETQAKPQAYLSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYPK 120
           DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDL+TKNP+LYLDFPQGRMKLFGTIMYPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLATKNPVLYLDFPQGRMKLFGTIMYPK 120

Query: 121 NRYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCGEYD 180
           NRYLTLQFS+GGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPK+LT+GQCGEYD
Sbjct: 121 NRYLTLQFSKGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKELTLGQCGEYD 180

Query: 181 FNGGAGVXXXXXXXXXXXXXKQSVQRKGINPAAENSFKGEHGDDLVGLEASVTNSIKTTP 240
           FNGGAGV             KQSVQ+KGINPA ENSFKGEHGDDLVGLEASVTNS+KT P
Sbjct: 181 FNGGAGV---------TSTSKQSVQKKGINPATENSFKGEHGDDLVGLEASVTNSVKTMP 240

Query: 241 VRHSERSARKVFNFAEASSEDESAGTDADLSEGEEKNIVIHEPSIGDHASEKTEDISVES 300
           VRHSERSARKVFNFAEASSEDES GTD DLSEGEEKNIVIHEPSIGDHASEKTEDISVES
Sbjct: 241 VRHSERSARKVFNFAEASSEDESTGTDTDLSEGEEKNIVIHEPSIGDHASEKTEDISVES 300

Query: 301 IDEDAVKIKPPFLEGNQTSISKEKKSFRAKGSAQSDTRGLVQPTLLSLFKKVEEKRTPRS 360
           IDEDAV+IKP FLEGNQTSISKEKK+ RAKGSAQSDTRGLVQPTLLSLFKKVEEKRTPRS
Sbjct: 301 IDEDAVEIKPSFLEGNQTSISKEKKNSRAKGSAQSDTRGLVQPTLLSLFKKVEEKRTPRS 360

Query: 361 SKRSSAPKVSTQKMQLSGSKQKIDQDEGSKKRRVVRGQGGKAQKKDTEYEVEDEIEDLSS 420
           SKRSS PKVSTQKMQLSGSKQKIDQDEGSKKRR VRGQGGKAQ+KDTEYEVEDEIE+LSS
Sbjct: 361 SKRSSVPKVSTQKMQLSGSKQKIDQDEGSKKRRAVRGQGGKAQRKDTEYEVEDEIEELSS 420

Query: 421 SQEDTDEDWTS 431
           SQEDTDEDWTS
Sbjct: 421 SQEDTDEDWTS 422

[Close]

BLAST of CsaV3_1G007510 vs. NCBI nr
Match: XP_022924051.1 (DNA-binding protein RHL1-like [Cucurbita moschata])

HSP 1 Score: 657.1 bits (1694), Expect = 4.0e-185
Identity = 354/434 (81.57%), Postives = 383/434 (88.25%), Query Frame = 0


Query: 1   MARG-SSSKKDEAKGEINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHGK 60
           MARG SSSK+DEAKGE+ PEIA RKRLKKLAF+N+ILSETQA+PQAY SPSATVLKHHGK
Sbjct: 1   MARGSSSSKRDEAKGEMEPEIAARKRLKKLAFTNNILSETQAKPQAYPSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYPK 120
           DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDL TKNPILYLDFPQGR+KLFGTI+YPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYPK 120

Query: 121 NRYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCGEYD 180
           NRYLTLQFSRGGKNV CEDCFDNMIVFSDAWWIGTKDENPEE  LDFPK++TMG+CGEYD
Sbjct: 121 NRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPKEMTMGKCGEYD 180

Query: 181 FNGGAGVXXXXXXXXXXXXXKQSVQRKGINPAAENSFKGEHGDDLVGLEASVTNSIKTTP 240
           FNGGAGV             KQSVQ+KGIN A E S KGEHGDDLV LE ++TNS+KTTP
Sbjct: 181 FNGGAGV---------ASTSKQSVQKKGINRAEEKSLKGEHGDDLVDLEDNMTNSMKTTP 240

Query: 241 VRHSERSARKVFNFAEASSEDESAGTDADLSEGEEKNIVIHEPSIGDHASEKTEDISVES 300
           VRHSERSA KVFNFA+A S++ESAGT AD SEGEEKNIVIHEPSIGDHASEKTE +SV+S
Sbjct: 241 VRHSERSAGKVFNFAQAFSKEESAGTYADFSEGEEKNIVIHEPSIGDHASEKTEVVSVDS 300

Query: 301 IDEDAVKIKPPFLEGNQTSISKEKKSFRAKGSAQSDTRG-LVQPTLLSLFKKVEEKRTPR 360
            D+DAV+ +P FLEGN+T ISK K   RAKG+AQS  RG LVQPTL SLFKKVEEKRTPR
Sbjct: 301 EDKDAVE-RPRFLEGNKTPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKKVEEKRTPR 360

Query: 361 SSKRSSAPKVSTQKMQLSGSKQKIDQDEGSKKRRVVRGQ--GGKAQKKDTEYEVEDEIED 420
           SSKRSS PKVS QKMQLSGSKQKIDQDEG KKRRVV+GQ  GGK ++KDTEYE ED+IE+
Sbjct: 361 SSKRSSTPKVSAQKMQLSGSKQKIDQDEGLKKRRVVQGQDDGGKFRRKDTEYEDEDDIEE 420

Query: 421 LSSSQEDTDEDWTS 431
           LSSSQEDTDEDWTS
Sbjct: 421 LSSSQEDTDEDWTS 424

[Close]

BLAST of CsaV3_1G007510 vs. NCBI nr
Match: XP_023001787.1 (DNA-binding protein RHL1-like [Cucurbita maxima])

HSP 1 Score: 644.8 bits (1662), Expect = 2.1e-181
Identity = 349/434 (80.41%), Postives = 380/434 (87.56%), Query Frame = 0


Query: 1   MARG-SSSKKDEAKGEINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHGK 60
           MARG SSSK+DEAKGE++PEIA RKRLKKLAF+N+ILSETQA+PQAYLSPSATVLKHHGK
Sbjct: 1   MARGSSSSKRDEAKGEMDPEIAARKRLKKLAFTNNILSETQAKPQAYLSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYPK 120
           DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDL TKNPILYLDFPQGR+KLFGTI+YPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYPK 120

Query: 121 NRYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCGEYD 180
           NRYLTLQFSRGGKNV CEDCFDNMIVFSDAWWIGTKDENPEE  LDFPK++TMG+CGEYD
Sbjct: 121 NRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPKEMTMGKCGEYD 180

Query: 181 FNGGAGVXXXXXXXXXXXXXKQSVQRKGINPAAENSFKGEHGDDLVGLEASVTNSIKTTP 240
           FNGGAGV             KQSVQ+KGI+ A ENS K EHGDDLV LE ++TNS+KTTP
Sbjct: 181 FNGGAGV---------ASTSKQSVQKKGIDRAEENSLKEEHGDDLVDLEDNMTNSMKTTP 240

Query: 241 VRHSERSARKVFNFAEASSEDESAGTDADLSEGEEKNIVIHEPSIGDHASEKTEDISVES 300
           VRHSERS  KVFNFA+A S++ESAGT AD SEGEEKNIVI+EPSIGDHASEKTE +SV+S
Sbjct: 241 VRHSERSGGKVFNFAQAFSKEESAGTLADFSEGEEKNIVIYEPSIGDHASEKTEVVSVDS 300

Query: 301 IDEDAVKIKPPFLEGNQTSISKEKKSFRAKGSAQSDTRG-LVQPTLLSLFKKVEEKRTPR 360
            D+DAV+ +P FLEGN+T ISK K   RAKG+AQS  RG LVQPTL SLFKKVEEKRTPR
Sbjct: 301 EDKDAVE-RPRFLEGNKTPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKKVEEKRTPR 360

Query: 361 SSKRSSAPKVSTQKMQLSGSKQKIDQDEGSKKRRVVRGQ--GGKAQKKDTEYEVEDEIED 420
           SSKRSS PKVS QK QLSGSKQKIDQDEG KKR VV+GQ  GGK  +KDTEYE ED+IE+
Sbjct: 361 SSKRSSTPKVSAQKKQLSGSKQKIDQDEGLKKRGVVQGQDDGGKFGRKDTEYEDEDDIEE 420

Query: 421 LSSSQEDTDEDWTS 431
           L SSQEDTDEDWTS
Sbjct: 421 LLSSQEDTDEDWTS 424

[Close]

BLAST of CsaV3_1G007510 vs. NCBI nr
Match: XP_016900011.1 (PREDICTED: DNA-binding protein RHL1 isoform X3 [Cucumis melo])

HSP 1 Score: 634.0 bits (1634), Expect = 3.6e-178
Identity = 324/357 (90.76%), Postives = 335/357 (93.84%), Query Frame = 0


Query: 1   MARG-SSSKKDEAKGEINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHGK 60
           MARG SSSKKDEAKGEINPEI ERKRLKKLAFSN+ILSETQA+PQAYLSPSATVLKHHGK
Sbjct: 1   MARGSSSSKKDEAKGEINPEIGERKRLKKLAFSNNILSETQAKPQAYLSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYPK 120
           DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDL+TKNP+LYLDFPQGRMKLFGTIMYPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLATKNPVLYLDFPQGRMKLFGTIMYPK 120

Query: 121 NRYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCGEYD 180
           NRYLTLQFS+GGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPK+LT+GQCGEYD
Sbjct: 121 NRYLTLQFSKGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKELTLGQCGEYD 180

Query: 181 FNGGAGVXXXXXXXXXXXXXKQSVQRKGINPAAENSFKGEHGDDLVGLEASVTNSIKTTP 240
           FNGGAGV             KQSVQ+KGINPA ENSFKGEHGDDLVGLEASVTNS+KT P
Sbjct: 181 FNGGAGV---------TSTSKQSVQKKGINPATENSFKGEHGDDLVGLEASVTNSVKTMP 240

Query: 241 VRHSERSARKVFNFAEASSEDESAGTDADLSEGEEKNIVIHEPSIGDHASEKTEDISVES 300
           VRHSERSARKVFNFAEASSEDES GTD DLSEGEEKNIVIHEPSIGDHASEKTEDISVES
Sbjct: 241 VRHSERSARKVFNFAEASSEDESTGTDTDLSEGEEKNIVIHEPSIGDHASEKTEDISVES 300

Query: 301 IDEDAVKIKPPFLEGNQTSISKEKKSFRAKGSAQSDTRGLVQPTLLSLFKKVEEKRT 357
           IDEDAV+IKP FLEGNQTSISKEKK+ RAKGSAQSDTRGLVQPTLLSLFKKVEEK T
Sbjct: 301 IDEDAVEIKPSFLEGNQTSISKEKKNSRAKGSAQSDTRGLVQPTLLSLFKKVEEKET 348

[Close]

BLAST of CsaV3_1G007510 vs. TAIR10
Match: AT1G48380.2 (root hair initiation protein root hairless 1 (RHL1))

HSP 1 Score: 269.2 bits (687), Expect = 4.3e-72
Identity = 175/404 (43.32%), Postives = 222/404 (54.95%), Query Frame = 0


Query: 1   MARGSSSKKDEAKG--EINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHG 60
           M R SSSKK  +KG  + + E  +RKRLK LA  N +LS++ A+  + L PS  VLKHHG
Sbjct: 1   MVRASSSKKGGSKGGDKDDAESKQRKRLKTLALDNQLLSDSPAKSHSSLKPSKQVLKHHG 60

Query: 61  KDIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYP 120
            DI++KSQRKNRFLFSF GLLAP+S   IG+L  LSTKNP+LYL+FPQGRMKLFGTI+YP
Sbjct: 61  TDIIRKSQRKNRFLFSFPGLLAPISAATIGDLDRLSTKNPVLYLNFPQGRMKLFGTILYP 120

Query: 121 KNRYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLT------- 180
           KNRYLTLQFSRGGKNV C+D FDNMIVFS++WWIGTK+ENPEEA LDFPK+L        
Sbjct: 121 KNRYLTLQFSRGGKNVLCDDYFDNMIVFSESWWIGTKEENPEEARLDFPKELAQVDTFHL 180

Query: 181 ------------------------MGQCGEYDFNGGAGVXXXXXXXXXXXXXKQSVQRKG 240
                                     +  E+DF GGAG               Q  +   
Sbjct: 181 FLHFLFKTMVATEMFNMIRRILWFQAENTEFDFQGGAGGAASVKKLASPEIGSQPTETD- 240

Query: 241 INPAAEN----SFKGEHGDDLV--GLEASVTNSIKTTPVRHSERSARKVFNFAEASSEDE 300
            +P  +N    S  GE  DD +                   S+R++ K FNFAE SSE  
Sbjct: 241 -SPEVDNEDVLSEDGEFLDDKIQXXXXXXXXXXXXXXXXXXSQRNSGKKFNFAETSSEAS 300

Query: 301 SAGTDADLSEGEEKNIVIHEPSIGDHASEKTEDISVESIDEDAVKIKPPFLEGNQTSISK 360
           S  ++ + S+ +EK ++  EP     + E+++D     I   A K+        +   SK
Sbjct: 301 SGESEGNTSDEDEKPLL--EPESSTRSREESQD--GNGITASASKLPEELPAKREKLKSK 360

Query: 361 EKKSFRAKGSAQSDTRGLVQPTLLSLFKKVEEKRTPRSSKRSSA 366
           + K              LVQ TL +LFKK EEK    S  +SS+
Sbjct: 361 DSK--------------LVQATLSNLFKKAEEKTAGTSKAKSSS 384

[Close]

BLAST of CsaV3_1G007510 vs. Swiss-Prot
Match: sp|O81242|RHL1_ARATH (DNA-binding protein RHL1 OS=Arabidopsis thaliana OX=3702 GN=RHL1 PE=1 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.0e-75
Identity = 175/373 (46.92%), Postives = 222/373 (59.52%), Query Frame = 0


Query: 1   MARGSSSKKDEAKG--EINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHG 60
           M R SSSKK  +KG  + + E  +RKRLK LA  N +LS++ A+  + L PS  VLKHHG
Sbjct: 1   MVRASSSKKGGSKGGDKDDAESKQRKRLKTLALDNQLLSDSPAKSHSSLKPSKQVLKHHG 60

Query: 61  KDIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYP 120
            DI++KSQRKNRFLFSF GLLAP+S   IG+L  LSTKNP+LYL+FPQGRMKLFGTI+YP
Sbjct: 61  TDIIRKSQRKNRFLFSFPGLLAPISAATIGDLDRLSTKNPVLYLNFPQGRMKLFGTILYP 120

Query: 121 KNRYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCGEY 180
           KNRYLTLQFSRGGKNV C+D FDNMIVFS++WWIGTK+ENPEEA LDFPK+L   +  E+
Sbjct: 121 KNRYLTLQFSRGGKNVLCDDYFDNMIVFSESWWIGTKEENPEEARLDFPKELAQAENTEF 180

Query: 181 DFNGGAGVXXXXXXXXXXXXXKQSVQRKGINPAAEN----SFKGEHGDDLV--GLEASVT 240
           DF GGAG               Q  +    +P  +N    S  GE  DD +         
Sbjct: 181 DFQGGAGGAASVKKLASPEIGSQPTETD--SPEVDNEDVLSEDGEFLDDKIQXXXXXXXX 240

Query: 241 NSIKTTPVRHSERSARKVFNFAEASSEDESAGTDADLSEGEEKNIVIHEPSIGDHASEKT 300
                     S+R++ K FNFAE SSE  S  ++ + S+ +EK ++  EP     + E++
Sbjct: 241 XXXXXXXXXXSQRNSGKKFNFAETSSEASSGESEGNTSDEDEKPLL--EPESSTRSREES 300

Query: 301 EDISVESIDEDAVKIKPPFLEGNQTSISKEKKSFRAKGSAQSDTRGLVQPTLLSLFKKVE 360
           +D     I   A K+        +   SK+ K              LVQ TL +LFKK E
Sbjct: 301 QD--GNGITASASKLPEELPAKREKLKSKDSK--------------LVQATLSNLFKKAE 353

Query: 361 EKRTPRSSKRSSA 366
           EK    S  +SS+
Sbjct: 361 EKTAGTSKAKSSS 353

[Close]

BLAST of CsaV3_1G007510 vs. TrEMBL
Match: tr|A0A0A0LVZ6|A0A0A0LVZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043140 PE=4 SV=1)

HSP 1 Score: 801.2 bits (2068), Expect = 1.1e-228
Identity = 430/430 (100.00%), Postives = 430/430 (100.00%), Query Frame = 0


Query: 1   MARGSSSKKDEAKGEINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHGKD 60
           MARGSSSKKDEAKGEINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHGKD
Sbjct: 1   MARGSSSKKDEAKGEINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHGKD 60

Query: 61  IVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYPKN 120
           IVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYPKN
Sbjct: 61  IVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYPKN 120

Query: 121 RYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCGEYDF 180
           RYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCGEYDF
Sbjct: 121 RYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCGEYDF 180

Query: 181 NGGAGVXXXXXXXXXXXXXKQSVQRKGINPAAENSFKGEHGDDLVGLEASVTNSIKTTPV 240
           NGGAGVXXXXXXXXXXXXXKQSVQRKGINPAAENSFKGEHGDDLVGLEASVTNSIKTTPV
Sbjct: 181 NGGAGVXXXXXXXXXXXXXKQSVQRKGINPAAENSFKGEHGDDLVGLEASVTNSIKTTPV 240

Query: 241 RHSERSARKVFNFAEASSEDESAGTDADLSEGEEKNIVIHEPSIGDHASEKTEDISVESI 300
           RHSERSARKVFNFAEASSEDESAGTDADLSEGEEKNIVIHEPSIGDHASEKTEDISVESI
Sbjct: 241 RHSERSARKVFNFAEASSEDESAGTDADLSEGEEKNIVIHEPSIGDHASEKTEDISVESI 300

Query: 301 DEDAVKIKPPFLEGNQTSISKEKKSFRAKGSAQSDTRGLVQPTLLSLFKKVEEKRTPRSS 360
           DEDAVKIKPPFLEGNQTSISKEKKSFRAKGSAQSDTRGLVQPTLLSLFKKVEEKRTPRSS
Sbjct: 301 DEDAVKIKPPFLEGNQTSISKEKKSFRAKGSAQSDTRGLVQPTLLSLFKKVEEKRTPRSS 360

Query: 361 KRSSAPKVSTQKMQLSGSKQKIDQDEGSKKRRVVRGQGGKAQKKDTEYEVEDEIEDLSSS 420
           KRSSAPKVSTQKMQLSGSKQKIDQDEGSKKRRVVRGQGGKAQKKDTEYEVEDEIEDLSSS
Sbjct: 361 KRSSAPKVSTQKMQLSGSKQKIDQDEGSKKRRVVRGQGGKAQKKDTEYEVEDEIEDLSSS 420

Query: 421 QEDTDEDWTS 431
           QEDTDEDWTS
Sbjct: 421 QEDTDEDWTS 430

[Close]

BLAST of CsaV3_1G007510 vs. TrEMBL
Match: tr|A0A1S3CTA5|A0A1S3CTA5_CUCME (DNA-binding protein RHL1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103504698 PE=4 SV=1)

HSP 1 Score: 758.4 bits (1957), Expect = 8.5e-216
Identity = 395/431 (91.65%), Postives = 408/431 (94.66%), Query Frame = 0


Query: 1   MARG-SSSKKDEAKGEINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHGK 60
           MARG SSSKKDEAKGEINPEI ERKRLKKLAFSN+ILSETQA+PQAYLSPSATVLKHHGK
Sbjct: 1   MARGSSSSKKDEAKGEINPEIGERKRLKKLAFSNNILSETQAKPQAYLSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYPK 120
           DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDL+TKNP+LYLDFPQGRMKLFGTIMYPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLATKNPVLYLDFPQGRMKLFGTIMYPK 120

Query: 121 NRYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCGEYD 180
           NRYLTLQFS+GGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPK+LT+GQCGEYD
Sbjct: 121 NRYLTLQFSKGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKELTLGQCGEYD 180

Query: 181 FNGGAGVXXXXXXXXXXXXXKQSVQRKGINPAAENSFKGEHGDDLVGLEASVTNSIKTTP 240
           FNGGAGV             KQSVQ+KGINPA ENSFKGEHGDDLVGLEASVTNS+KT P
Sbjct: 181 FNGGAGV---------TSTSKQSVQKKGINPATENSFKGEHGDDLVGLEASVTNSVKTMP 240

Query: 241 VRHSERSARKVFNFAEASSEDESAGTDADLSEGEEKNIVIHEPSIGDHASEKTEDISVES 300
           VRHSERSARKVFNFAEASSEDES GTD DLSEGEEKNIVIHEPSIGDHASEKTEDISVES
Sbjct: 241 VRHSERSARKVFNFAEASSEDESTGTDTDLSEGEEKNIVIHEPSIGDHASEKTEDISVES 300

Query: 301 IDEDAVKIKPPFLEGNQTSISKEKKSFRAKGSAQSDTRGLVQPTLLSLFKKVEEKRTPRS 360
           IDEDAV+IKP FLEGNQTSISKEKK+ RAKGSAQSDTRGLVQPTLLSLFKKVEEKRTPRS
Sbjct: 301 IDEDAVEIKPSFLEGNQTSISKEKKNSRAKGSAQSDTRGLVQPTLLSLFKKVEEKRTPRS 360

Query: 361 SKRSSAPKVSTQKMQLSGSKQKIDQDEGSKKRRVVRGQGGKAQKKDTEYEVEDEIEDLSS 420
           SKRSS PKVSTQKMQLSGSKQKIDQDEGSKKRR VRGQGGKAQ+KDTEYEVEDEIE+LSS
Sbjct: 361 SKRSSVPKVSTQKMQLSGSKQKIDQDEGSKKRRAVRGQGGKAQRKDTEYEVEDEIEELSS 420

Query: 421 SQEDTDEDWTS 431
           SQEDTDEDWTS
Sbjct: 421 SQEDTDEDWTS 422

[Close]

BLAST of CsaV3_1G007510 vs. TrEMBL
Match: tr|A0A1S4DVK0|A0A1S4DVK0_CUCME (DNA-binding protein RHL1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103504698 PE=4 SV=1)

HSP 1 Score: 634.0 bits (1634), Expect = 2.4e-178
Identity = 324/357 (90.76%), Postives = 335/357 (93.84%), Query Frame = 0


Query: 1   MARG-SSSKKDEAKGEINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHGK 60
           MARG SSSKKDEAKGEINPEI ERKRLKKLAFSN+ILSETQA+PQAYLSPSATVLKHHGK
Sbjct: 1   MARGSSSSKKDEAKGEINPEIGERKRLKKLAFSNNILSETQAKPQAYLSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYPK 120
           DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDL+TKNP+LYLDFPQGRMKLFGTIMYPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLATKNPVLYLDFPQGRMKLFGTIMYPK 120

Query: 121 NRYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCGEYD 180
           NRYLTLQFS+GGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPK+LT+GQCGEYD
Sbjct: 121 NRYLTLQFSKGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKELTLGQCGEYD 180

Query: 181 FNGGAGVXXXXXXXXXXXXXKQSVQRKGINPAAENSFKGEHGDDLVGLEASVTNSIKTTP 240
           FNGGAGV             KQSVQ+KGINPA ENSFKGEHGDDLVGLEASVTNS+KT P
Sbjct: 181 FNGGAGV---------TSTSKQSVQKKGINPATENSFKGEHGDDLVGLEASVTNSVKTMP 240

Query: 241 VRHSERSARKVFNFAEASSEDESAGTDADLSEGEEKNIVIHEPSIGDHASEKTEDISVES 300
           VRHSERSARKVFNFAEASSEDES GTD DLSEGEEKNIVIHEPSIGDHASEKTEDISVES
Sbjct: 241 VRHSERSARKVFNFAEASSEDESTGTDTDLSEGEEKNIVIHEPSIGDHASEKTEDISVES 300

Query: 301 IDEDAVKIKPPFLEGNQTSISKEKKSFRAKGSAQSDTRGLVQPTLLSLFKKVEEKRT 357
           IDEDAV+IKP FLEGNQTSISKEKK+ RAKGSAQSDTRGLVQPTLLSLFKKVEEK T
Sbjct: 301 IDEDAVEIKPSFLEGNQTSISKEKKNSRAKGSAQSDTRGLVQPTLLSLFKKVEEKET 348

[Close]

BLAST of CsaV3_1G007510 vs. TrEMBL
Match: tr|A0A1S4DWD5|A0A1S4DWD5_CUCME (DNA-binding protein RHL1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504698 PE=4 SV=1)

HSP 1 Score: 631.7 bits (1628), Expect = 1.2e-177
Identity = 333/388 (85.82%), Postives = 349/388 (89.95%), Query Frame = 0


Query: 1   MARG-SSSKKDEAKGEINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHGK 60
           MARG SSSKKDEAKGEINPEI ERKRLKKLAFSN+ILSETQA+PQAYLSPSATVLKHHGK
Sbjct: 1   MARGSSSSKKDEAKGEINPEIGERKRLKKLAFSNNILSETQAKPQAYLSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYPK 120
           DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDL+TKNP+LYLDFPQGRMKLFGTIMYPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLATKNPVLYLDFPQGRMKLFGTIMYPK 120

Query: 121 NRYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCGEYD 180
           NRYLTLQFS+GGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPK+LT+GQCGEYD
Sbjct: 121 NRYLTLQFSKGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKELTLGQCGEYD 180

Query: 181 FNGGAGVXXXXXXXXXXXXXKQSVQRKGINPAAENSFKGEHGDDLVGLEASVTNSIKTTP 240
           FNGGAGV             KQSVQ+KGINPA ENSFKGEHGDDLVGLEASVTNS+KT P
Sbjct: 181 FNGGAGV---------TSTSKQSVQKKGINPATENSFKGEHGDDLVGLEASVTNSVKTMP 240

Query: 241 VRHSERSARKVFNFAEASSEDESAGTDADLSEGEEKNIVIHEPSIGDHASEKTEDISVES 300
           VRHSERSARKVFNFAEASSEDES GTD DLSEGEEKNIVIHEPSIGDHASEKTEDISVES
Sbjct: 241 VRHSERSARKVFNFAEASSEDESTGTDTDLSEGEEKNIVIHEPSIGDHASEKTEDISVES 300

Query: 301 IDEDAVKIKPPFLEGNQTSISKEKKSFRAKGSAQSDTRGLVQPTLLSLFKKVEEKRTPR- 360
           IDEDAV+IKP FLEGNQTSISKEKK+ RAKGSAQSDTRGLVQPTLLSLFKKVEEK  P+ 
Sbjct: 301 IDEDAVEIKPSFLEGNQTSISKEKKNSRAKGSAQSDTRGLVQPTLLSLFKKVEEKFLPKR 360

Query: 361 -----SSKRSSAPKVSTQKMQLSGSKQK 382
                 SKR +  K   +K  LSG K++
Sbjct: 361 CSCLVQSKRLTRMK-DQRKGGLSGDKEE 378

[Close]

BLAST of CsaV3_1G007510 vs. TrEMBL
Match: tr|A0A2I4GZG7|A0A2I4GZG7_9ROSI (DNA-binding protein RHL1 OS=Juglans regia OX=51240 GN=LOC109012217 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.4e-101
Identity = 231/451 (51.22%), Postives = 299/451 (66.30%), Query Frame = 0


Query: 1   MARG--SSSKKD--EAKGEINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKH 60
           MARG  SSSKK+  E+  E+ P + ERKRLK+LAF+N+ILSET A     LSPS  V+KH
Sbjct: 1   MARGSSSSSKKEARESSRELGPVVTERKRLKRLAFANNILSETPAEVHQQLSPSKAVIKH 60

Query: 61  HGKDIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIM 120
           HGKDI+KKSQRKN+FLFSF GLLAPV+GGKIGELKDL TKNP+LYLDFPQGRMK FGTI+
Sbjct: 61  HGKDILKKSQRKNKFLFSFPGLLAPVAGGKIGELKDLGTKNPVLYLDFPQGRMKFFGTIV 120

Query: 121 YPKNRYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCG 180
           YP NRYL+LQF RGGKNV CED FDNMIVFS+AWWIG KDENPEEA L+FPK+L  GQ  
Sbjct: 121 YPTNRYLSLQFPRGGKNVMCEDVFDNMIVFSEAWWIGRKDENPEEARLNFPKELDEGQLI 180

Query: 181 EYDFNGGAGVXXXXXXXXXXXXXKQSVQRKGINPAAENSFKGEHGDDLVGLEASVTNSIK 240
           EYDF GGAG              + S+ +  I    E S K E   DL   E  + +  +
Sbjct: 181 EYDFKGGAGA---------ASTNQPSLHKTEIRLVEEQSPKVEFEVDLSDGENMLKDFTE 240

Query: 241 TTPVRHSERSARKVFNFAEASSEDESAGTDADLSEGEEKNIVIHEPSIGDHASEKTEDIS 300
            TPVRHSER+A + FNFAE+SS ++S   + D+S  EEK +V  + S  +  + KTE++S
Sbjct: 241 ETPVRHSERTAGRTFNFAESSSGEDSVECNDDVSSSEEKKVVEVDSSTTNCTAGKTENLS 300

Query: 301 VESID---EDAVKIK--PPFLEGNQTSISKEKK-------SFRAKGSAQSDTRGLVQPTL 360
             +ID   +DAV+    P   EG+   +SK K+          +KG + +    LVQ T+
Sbjct: 301 NVNIDIDYKDAVERTQIPEQDEGDVVLVSKLKRQSHTATPGTESKGMSHTSDGSLVQATI 360

Query: 361 LSLFKKVEEKRTPRSSKRSSAPKVSTQKMQLSGSKQKIDQDEGSKKRRVVRGQ--GGKAQ 420
            +LFKKVE K  PR+ ++S +P+VS QK + + SK+  ++D   KK +V+R +  GG+A 
Sbjct: 361 STLFKKVEGKIAPRNPRKSPSPRVSGQKSRSTESKRSRNEDGPRKKAKVIRAKDAGGRAM 420

Query: 421 KKDTEYEVEDEIEDLSSSQED---TDEDWTS 431
            K  +   +D+IE  SSS +D   +D+DW +
Sbjct: 421 AKKKDEIEDDDIEQFSSSSQDGHGSDDDWAA 442

The following BLAST results are available for this feature:

BLAST of CsaV3_1G007510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137530.1	1.7e-228	100.00	PREDICTED: DNA-binding protein RHL1 [Cucumis sativus] >KGN64211.1 hypothetical p...	[more]
XP_008467323.1	1.3e-215	91.65	PREDICTED: DNA-binding protein RHL1 isoform X2 [Cucumis melo]	[more]
XP_022924051.1	4.0e-185	81.57	DNA-binding protein RHL1-like [Cucurbita moschata]	[more]
XP_023001787.1	2.1e-181	80.41	DNA-binding protein RHL1-like [Cucurbita maxima]	[more]
XP_016900011.1	3.6e-178	90.76	PREDICTED: DNA-binding protein RHL1 isoform X3 [Cucumis melo]	[more]

BLAST of CsaV3_1G007510 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48380.2	4.3e-72	43.32	root hair initiation protein root hairless 1 (RHL1)	[more]

BLAST of CsaV3_1G007510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O81242\|RHL1_ARATH	1.0e-75	46.92	DNA-binding protein RHL1 OS=Arabidopsis thaliana OX=3702 GN=RHL1 PE=1 SV=1	[more]

BLAST of CsaV3_1G007510 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LVZ6\|A0A0A0LVZ6_CUCSA	1.1e-228	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043140 PE=4 SV=1	[more]
tr\|A0A1S3CTA5\|A0A1S3CTA5_CUCME	8.5e-216	91.65	DNA-binding protein RHL1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103504698 PE=4...	[more]
tr\|A0A1S4DVK0\|A0A1S4DVK0_CUCME	2.4e-178	90.76	DNA-binding protein RHL1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103504698 PE=4...	[more]
tr\|A0A1S4DWD5\|A0A1S4DWD5_CUCME	1.2e-177	85.82	DNA-binding protein RHL1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504698 PE=4...	[more]
tr\|A0A2I4GZG7\|A0A2I4GZG7_9ROSI	2.4e-101	51.22	DNA-binding protein RHL1 OS=Juglans regia OX=51240 GN=LOC109012217 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0042023	DNA endoreduplication

Vocabulary: **INTERPRO**
Term	Definition
IPR038859	RHL1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042023	DNA endoreduplication
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G007510.1	CsaV3_1G007510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 382..408
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 282..308
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 282..430
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 362..381
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 409..430
IPR038859	DNA-binding protein RHL1	PANTHER	PTHR35698	FAMILY NOT NAMED	coord: 8..425

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G007510	CSPI01G07540	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G007510	Cucsa.122270	Cucumber (Gy14) v1	cgycucB163
CsaV3_1G007510	CmaCh13G009600	Cucurbita maxima (Rimu)	cmacucB0248
CsaV3_1G007510	CmaCh18G001000	Cucurbita maxima (Rimu)	cmacucB0464
CsaV3_1G007510	CmoCh13G009940	Cucurbita moschata (Rifu)	cmocucB0234
CsaV3_1G007510	CmoCh18G000770	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G007510	Cp4.1LG09g10920	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G007510	Cp4.1LG20g01720	Cucurbita pepo (Zucchini)	cpecucB0623
CsaV3_1G007510	CsGy1G007420	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G007510	Carg04876	Silver-seed gourd	carcucB0418
CsaV3_1G007510	Carg06655	Silver-seed gourd	carcucB0529
CsaV3_1G007510	Cla008383	Watermelon (97103) v1	cucwmB048
CsaV3_1G007510	MELO3C002168	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G007510	ClCG01G014820	Watermelon (Charleston Gray)	cucwcgB023
CsaV3_1G007510	Lsi02G002720	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G007510	MELO3C002168.2	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G007510	Cla97C01G013830	Watermelon (97103) v2	cucwmbB009
CsaV3_1G007510	Bhi08G001113	Wax gourd	cucwgoB031

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None