Carg04876 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04876
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DNA-binding protein RHL1 isoform X2
Location	Cucurbita_argyrosperma_scaffold_028 : 1437356 .. 1443188 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCGAGGATCATCGTCTTCGAAGAGGGACGAAGCAAAAGGAGAAATGGATCCTGAGATTGCAGCACGAAAGCGGCTTAAGAAGCTTGCATTTAACAATAACATACTTTCAGAAACCCAGGCCAAGCCCCAGGCGTATCTGAGCCCTTCAGCGACGGTTCTGAAGCACCATGGCAAAGACATTGTCAAGAAATCTCAGCGAAAGAACAGGTTCCTGTTCTCGTTTTCGGGCTTGCTTGCTCCCGTTAGTGGAGGAAAGATTGGCGAGCTCAAGGATTTGGGGACCAAGAATCCCATTCTCTATCTTGACTTCCCTCAGGTTCGTCTGTTTCTTCTTTGCTCTAAACACCTTTCTATTTTTCTCTGCTTTGAAAGGTTCCTACAGTTTTCTTCAACTTTTTCTCCTGATTCGCGTTCTTATATGTTCTTGTTGCCTGTGCATTTGGCACTTGTTTGTCATCTCCATCCACCCCCATGTATGATAGACAATCCCATATAGCACTCCATGTTTCTCCCATGTCTCTTCTATACCTACGTTTCATCTTCTGATAGCCTTATTTTGATGTAGAATTTATGTGGTCATTAAGCATGTCGAATTGGAGTTGTTCTCCGTACTAATTCTTTTGCTTTTCAGGGGCGTCTAAAGTTGTTTGGAACTATCGTGTATCCGAAGAACAGATATTTGACTTTGCAGTTTTCTAGAGGCGGAAAGAATGTGATGTGTGAAGATTGTTTTGATAATATGGTTGGTCTTTTTGCTTTTCCTTTTTCCCTCCTTTTTTTTTTTTTTTTTTTGGCATCTTTGTGTCTTTTCTTTCAAAGATAAGGCAAAAATCCTCAGATTCAATACAAGTTGGGCTCGATTAGATCTAATGTATTGGCCTTTCTCTTGGTTTTGTTTTTAGATAGTTTTTTAATATCGATAATGTGAGATCCCCACATCGATTGGAGAGGGTAACGAAACATTCTTTATCAATGTGTGGAAATCTCACCCTAGTAGATACGTTTTAAAAACCTTCGAGGGTTGGTGGGTTGGAGGGAAAGCCCGAAAAGAAAAGCCCAAAGAGAACAATATCTGCTAGCAGTGGGCAAGCTGATATAGATAAAATTGTGGGTTTTCCCTCTTTAAGAAATTAGGATCTTTACCGTTAATAACTTTTCCGAGAATTCACTAATCACAATGTGGAAGTTATTTTCTTAATCTCGTTATTGAAGTCGATACAGATGGCATCACGTTAAACAAATAAAGTCAAACAGTTCCAATGAAGCATGGTGCCTAAAATGCTGATGCTCAAGGTGCAAGGCTTCTGTTAGTATTAGGCCTTTGTCTGAGCAGACAATAAGTCAAGTATTGGCCATAGCTTGCAGACATCTAGCAAGATCTCTTCTTAAATGATATGTTTGCCCGATAAAGTGTGGCAAGGACAATCATCCCCCCACCAAAAGTAAAGGAAAAAGAAGAAGAAAAAGCCAGGTTAAGTTCTCCTGGTGTTTTGGCAAACGATGCCTCAAGTAGATGCCAGATTGTATCATTTTTTGTTCCCTGCCATTATTTACTATCTTCAGATTAAGAACAATTGTTAGGTTCCAATTCACTATGTTGAACGACTCTCTTAGTTTAATCATCATAATGGTGGGAACACCTTTTGACTCAACGGGTTTTTCTCCGACTGCAGATTGTCTTTTCTGATGCATGGTGGATTGGAACAAAAGATGAAAATCCAGAGGAGGACCGTCTTGATTTTCCTAAACAAATGACTATGGTAAGTTTCTTGATAATTTTCAGGTTCTTAAAATGTTTTTTTTTTTTTTTTTTTTGGGTACTTGTTCTTCCCGTCCTGTGAATTTCCCTTTCTTATTACATTTTCTTCTTCATTACACGCTTTACCACTTGTAGTAAGGTAGAATAATTTTATCAATTCCATTTCCGCATCTTTCCTGGAGGGCTTATATGTGAAGCTTCTTGTATGGTTGTTTTGCGAGTCTGCACTGTTTTATTTGGGGCTGGTGCTGCTGTGCCTGCCTTTCTGTTTTACTTTCATTTTCTGAATTGAAGTTCATTTTGAGAGAGACAGAAAGACGGAGAGAATTTGCTAACTCCAAGCTGTTATATGTCAGGGACAATGTGGAGAATATGACTTTAACGGTGGTGCTGGTGTAGCCAGTACGAGTAAGCAGAGTGTTCAAAAGAAGGGAATCAATCGTGCCGAAGAAAATTCCCTTAAAGAAGAACATGGAGATGACTTAGTGGACCTGGAAGACAACATGACAAATTCAATGAAGACTACGCCAGTTAGACATTCTGAAAGATCTGCCGGAAAAGTATTCAAGTATTACCCTTTGCTTATGTTGTTACTACGTAATTGCTATCTAATATCAATAAGGCAGAAAAGCAATTGGCTTATTTGGTATCAAATGGCTTATTTGATCAGCAGTCAGTACTATGAATGGTAGAATATTATGCTGGATGTCCATAATTGGTTTATGATTTTAAACGTTTGTAACTTTAAAACATGTTTTTCATAACGTCCACATTCATGTCATTACTAATATTCCTAACAGCTCCTCTGTTTAAATATTTTTTCCAATTATTTTACTTCTTCGACCATAGCGAATTTGAGTGAGCACCGCTTTAATCCTAGGTGTTTGTCTTGTTGAACTACCTTAAGCCCATTCAGAACTCCAGTTTCTTTCACTTCATCAGCTAGATGGTGTTAGTTGCTATACAGTGCGTTGGTTTGGATTTATAATTCTTATAAGGCTGTACAAATATGAAACAACCAACTTAATCGTTGAGTCTACCTTTTGTAATGTCGTTTAATTTATTTCCTTTTCGTGTTTCAGTTTTGCACAGGCTTTTTCTAAGGAGGAGTCTGCTGGCACTTACGCTGATTTTTCTGAAGGAGAAGAAAAGAATATTGTCATCCATGAACCTTCAATTGGAGATCATGCGAGTGAAAATATCCTGTTTATGATTATTGAGTTTGTTTTAATTCAATCTTGAAATTTATGTCTGCTGCTTTACTGTATGTTCGCTCCCTTAATTGATTGATACAGACAGAAGTTGTCTCTGTCGATTCTGAAGATAAAGATGCTGTGGAAAGACCTCGATTTCTTGAAGGAAATAAAACACCAATTTCTAAGTCTAAAAATGGTTCTCGGGCCAAGGGAAATGCTCAGAGTGGTAATCGTGGTTTACTTGTCCAGCCTACTCTACCTAGTTTGTTCAAGAAAGTGGAGGAAAAGGTAATATCTGAAAACCTTTACTCAACATGTGGAGGAAATAGATTGTTGGTTAGAATCTGTTTACTGCTACATTTAGGAGTTTATTATAACTACTAATTATTTTTTTTTATGCAAAAGGAAATGCTCCAAGTAAAATTCTCATTAATCCTTAATCCTTCCTCCGATGAGTCAGTCTCATTTCCTTTCTATAGTAGGGCAAGCACACAGTGAAATATAAATTAAAACGTACACTCCATCTCTGCCTATAGTCTCGCTCCTCTCCGTATCCTTTACAGTCGAGTTCCTTCGTTCCTCTCCCTATCGGTCGAGAATCTTTTCTTTCCTCTCCACTCTACTTTTCTATGGAAATCTGCCAATTCATTATTTGGTTCCTAAACCTGCTTATTCATGTGGTAGAAGAGACCACCTAACATAGAATTGCTCCAAGTAAAGCCACTTAACCATAGAGTTCTTATGATTGAGTCACCGAAAAGGAAGATGCACATTATTTGTAAAGATAGTGACTTTCAATTCTTTTAAGCTTTTCTTAATTATCTTATCCTCGTGATCACTGTCATTCGGATGTGATTCTGTTTGGTCATATACCCATTTTTTACTTGGGTGTTGCAGTTGCATGCCAAAAAATTCCGTCTCCCATGGCTGCAAATATTGATAATTAAAGATGGAAGCGGAAGAAGGCTTTCTCTCCAGAGACCAGAGCGAAGATATGAGCCTCTAAAATTTTAGAAATTTTCAATATATAACCGTCATAGTTTCCTTGCCTAAATTAATTGTCTCGATGGAAGACAGAATATGATATAGCACTCTTTTTTAGCAGAAAAAGTATCAATAAAATAACTTGATAAAAAAAGTTGACTTTCCAAGATTTTTCTAAAACATGATTATTTCTTTCCATCCCAATGGCCTAGCAAAGTGCTGAAACTGAAAATTCCAAAAGGTTCTCAATCTTTTGCTAGTAACTCCAAAAATGTCTTATCTGAATAATAAATTTTATATCTTTAAGGCACATTTATTTGAAATGAATGCTTACTGTTTTCAGAGGACACCAAGAAGTTCAAAGAGGTCTTCAACACCCAAAGGTTCTAATTTTGTTCATTGATTTTATAATCATGACCATGAGAATACTACAGTAACATCAAATATGAAATTTTTGTTTTCTACAGTTTCTGCCCAAAAGATGCAGCTCTCTGGTTCAAAGCAAAAGATTGACCAGGTGATAAATCTTCATTTTTTAAATTTCAGGAATTAACCGTAATGGATTCTTGTGTAATTTTCAGGATGAAGGATTAAAGAAGAGGAGGGTTGTCCAGGGACAAGATGATGGTTAATCTCTCATGCTCTCTCCATTTACTGCTTGCTATTTCTCTAACAGGCTTATGGTCAGTTGATGTATATTAGCTCTATCAATTTGCAGGAGGAAAATTCCGGAGGAAGGATACAGAATATGAGGTATTAGTGCCATTTTTGCAAATAGTCCATTTAAAACATTTGCTGCTTTATTAGCTTCAGGATTTCTTATATGCACTTTTCCAGCTAGAAGTGGATATGCTTCTCTTATTTATTATCTAACTGGACTAGTCAGCCAGAAGTATCTTCATATTAATCAACTTAGCTGTTGGTGGAAAGGTTTCACAAATATTACTTTTTGGTTCGTAGTTTCAAAATGGTCAGTTTTAGTTTTTTTCTTGGTGAAACTAACAAAAAACCTTTAATTTTATGTTGCTCGCACTTGCCATCCTTCAAACAAATTCAACCAGCCACTCCTTCTCATGTCTAAGGCTCCAGAAAACTTGTCTCATCAGGTTACAATCAAAGTTTTTAAAATTTAATTGACACTGAATTCGCAACTCCGTGTAGTCTATTTCCATTTGCTATTCACGATCGAGTGTGGATGAAATGGTTGACGGATGAGACGTCATTGTATACTAAATCTGGTTTGTCTATATCTTGTAGGACGAAGATGACATCGAGGAGTTATCGAGCTCTCAAGAGGTGAGTGTTCAGTACCTATTATATGAACTACATACTTCTACCATGATTTCTAGAATATTGGATTGGAAGTTTGTTGGGCTGTGCCTTAGGTTTGTACTCATTTTGGAGTCTGATGGAAATATTTGGCTGAACTTAGTACATGTAGTCAATTTCTCACTTCATTCTTTAACTATTAATTATTTGGCTTAGTCCTTACCCTATATTAATTTCTCATTGTCGTGCATCCCATCACGTTTGTTGGAAAGTTGTCATTTCTTGACTGAATAACTATTTATGTCATGTAAGGTTATGAACAAAACAGGTCTCCATATGCCAAAATGTTGTTCTTGATCATGATCACCAAAAAGTGGCAACATTGTCATGAACTTCTCAGATGCATGTGGTTAAATAAATATGTTAGATTAATTTAGCAATTAAACTTGAAAATGGTAGTTGTTATTTAGGGACCAAATGAATTGCTTAACTAAAATATATTCCTTTTAGTTTCTTTTATAAATGTTAGATTAGGATCTTGCACAGTTTTTCTCACAATTTTGCTTGTCATTTAGGACACTGATGAAGATTGGACAAGTTGAGGTTACATTCTAACAATG

mRNA sequence

ATGGCGCGAGGATCATCGTCTTCGAAGAGGGACGAAGCAAAAGGAGAAATGGATCCTGAGATTGCAGCACGAAAGCGGCTTAAGAAGCTTGCATTTAACAATAACATACTTTCAGAAACCCAGGCCAAGCCCCAGGCGTATCTGAGCCCTTCAGCGACGGTTCTGAAGCACCATGGCAAAGACATTGTCAAGAAATCTCAGCGAAAGAACAGGTTCCTGTTCTCGTTTTCGGGCTTGCTTGCTCCCGTTAGTGGAGGAAAGATTGGCGAGCTCAAGGATTTGGGGACCAAGAATCCCATTCTCTATCTTGACTTCCCTCAGGGGCGTCTAAAGTTGTTTGGAACTATCGTGTATCCGAAGAACAGATATTTGACTTTGCAGTTTTCTAGAGGCGGAAAGAATGTGATGTGTGAAGATTGTTTTGATAATATGATTGTCTTTTCTGATGCATGGTGGATTGGAACAAAAGATGAAAATCCAGAGGAGGACCGTCTTGATTTTCCTAAACAAATGACTATGGGACAATGTGGAGAATATGACTTTAACGGTGGTGCTGGTGTAGCCAGTACGAGTAAGCAGAGTGTTCAAAAGAAGGGAATCAATCGTGCCGAAGAAAATTCCCTTAAAGAAGAACATGGAGATGACTTAGTGGACCTGGAAGACAACATGACAAATTCAATGAAGACTACGCCAGTTAGACATTCTGAAAGATCTGCCGGAAAAGTATTCAATTTTGCACAGGCTTTTTCTAAGGAGGAGTCTGCTGGCACTTACGCTGATTTTTCTGAAGGAGAAGAAAAGAATATTGTCATCCATGAACCTTCAATTGGAGATCATGCGAGTGAAAATATCCTGTTTATGATTATTGAGTTTACAGAAGTTGTCTCTGTCGATTCTGAAGATAAAGATGCTGTGGAAAGACCTCGATTTCTTGAAGGAAATAAAACACCAATTTCTAAGTCTAAAAATGGTTCTCGGGCCAAGGGAAATGCTCAGAGTGGTAATCGTGGTTTACTTGTCCAGCCTACTCTACCTAGTTTGTTCAAGAAAGTGGAGGAAAAGAGGACACCAAGAAGTTCAAAGAGGTCTTCAACACCCAAAGTTTCTGCCCAAAAGATGCAGCTCTCTGGTTCAAAGCAAAAGATTGACCAGGATGAAGGATTAAAGAAGAGGAGGGTTGTCCAGGGACAAGATGATGGAGGAAAATTCCGGAGGAAGGATACAGAATATGAGGACGAAGATGACATCGAGGAGTTATCGAGCTCTCAAGAGGACACTGATGAAGATTGGACAAGTTGAGGTTACATTCTAACAATG

Coding sequence (CDS)

ATGGCGCGAGGATCATCGTCTTCGAAGAGGGACGAAGCAAAAGGAGAAATGGATCCTGAGATTGCAGCACGAAAGCGGCTTAAGAAGCTTGCATTTAACAATAACATACTTTCAGAAACCCAGGCCAAGCCCCAGGCGTATCTGAGCCCTTCAGCGACGGTTCTGAAGCACCATGGCAAAGACATTGTCAAGAAATCTCAGCGAAAGAACAGGTTCCTGTTCTCGTTTTCGGGCTTGCTTGCTCCCGTTAGTGGAGGAAAGATTGGCGAGCTCAAGGATTTGGGGACCAAGAATCCCATTCTCTATCTTGACTTCCCTCAGGGGCGTCTAAAGTTGTTTGGAACTATCGTGTATCCGAAGAACAGATATTTGACTTTGCAGTTTTCTAGAGGCGGAAAGAATGTGATGTGTGAAGATTGTTTTGATAATATGATTGTCTTTTCTGATGCATGGTGGATTGGAACAAAAGATGAAAATCCAGAGGAGGACCGTCTTGATTTTCCTAAACAAATGACTATGGGACAATGTGGAGAATATGACTTTAACGGTGGTGCTGGTGTAGCCAGTACGAGTAAGCAGAGTGTTCAAAAGAAGGGAATCAATCGTGCCGAAGAAAATTCCCTTAAAGAAGAACATGGAGATGACTTAGTGGACCTGGAAGACAACATGACAAATTCAATGAAGACTACGCCAGTTAGACATTCTGAAAGATCTGCCGGAAAAGTATTCAATTTTGCACAGGCTTTTTCTAAGGAGGAGTCTGCTGGCACTTACGCTGATTTTTCTGAAGGAGAAGAAAAGAATATTGTCATCCATGAACCTTCAATTGGAGATCATGCGAGTGAAAATATCCTGTTTATGATTATTGAGTTTACAGAAGTTGTCTCTGTCGATTCTGAAGATAAAGATGCTGTGGAAAGACCTCGATTTCTTGAAGGAAATAAAACACCAATTTCTAAGTCTAAAAATGGTTCTCGGGCCAAGGGAAATGCTCAGAGTGGTAATCGTGGTTTACTTGTCCAGCCTACTCTACCTAGTTTGTTCAAGAAAGTGGAGGAAAAGAGGACACCAAGAAGTTCAAAGAGGTCTTCAACACCCAAAGTTTCTGCCCAAAAGATGCAGCTCTCTGGTTCAAAGCAAAAGATTGACCAGGATGAAGGATTAAAGAAGAGGAGGGTTGTCCAGGGACAAGATGATGGAGGAAAATTCCGGAGGAAGGATACAGAATATGAGGACGAAGATGACATCGAGGAGTTATCGAGCTCTCAAGAGGACACTGATGAAGATTGGACAAGTTGA

Protein sequence

MARGSSSSKRDEAKGEMDPEIAARKRLKKLAFNNNILSETQAKPQAYLSPSATVLKHHGKDIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYPKNRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPKQMTMGQCGEYDFNGGAGVASTSKQSVQKKGINRAEENSLKEEHGDDLVDLEDNMTNSMKTTPVRHSERSAGKVFNFAQAFSKEESAGTYADFSEGEEKNIVIHEPSIGDHASENILFMIIEFTEVVSVDSEDKDAVERPRFLEGNKTPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKKVEEKRTPRSSKRSSTPKVSAQKMQLSGSKQKIDQDEGLKKRRVVQGQDDGGKFRRKDTEYEDEDDIEELSSSQEDTDEDWTS

Homology

[Close]

BLAST of Carg04876 vs. NCBI nr
Match: XP_022924051.1 (DNA-binding protein RHL1-like [Cucurbita moschata])

HSP 1 Score: 798.5 bits (2061), Expect = 1.1e-227
Identity = 416/432 (96.30%), Postives = 419/432 (96.99%), Query Frame = 0


Query: 1   MARGSSSSKRDEAKGEMDPEIAARKRLKKLAFNNNILSETQAKPQAYLSPSATVLKHHGK 60
           MARGSSSSKRDEAKGEM+PEIAARKRLKKLAF NNILSETQAKPQAY SPSATVLKHHGK
Sbjct: 1   MARGSSSSKRDEAKGEMEPEIAARKRLKKLAFTNNILSETQAKPQAYPSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYPK 120
           DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYPK 120

Query: 121 NRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPKQMTMGQCGEYD 180
           NRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPK+MTMG+CGEYD
Sbjct: 121 NRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPKEMTMGKCGEYD 180

Query: 181 FNGGAGVASTSKQSVQKKGINRAEENSLKEEHGDDLVDLEDNMTNSMKTTPVRHSERSAG 240
           FNGGAGVASTSKQSVQKKGINRAEE SLK EHGDDLVDLEDNMTNSMKTTPVRHSERSAG
Sbjct: 181 FNGGAGVASTSKQSVQKKGINRAEEKSLKGEHGDDLVDLEDNMTNSMKTTPVRHSERSAG 240

Query: 241 KVFNFAQAFSKEESAGTYADFSEGEEKNIVIHEPSIGDHASENILFMIIEFTEVVSVDSE 300
           KVFNFAQAFSKEESAGTYADFSEGEEKNIVIHEPSIGDHASE         TEVVSVDSE
Sbjct: 241 KVFNFAQAFSKEESAGTYADFSEGEEKNIVIHEPSIGDHASEK--------TEVVSVDSE 300

Query: 301 DKDAVERPRFLEGNKTPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKKVEEKRTPRSS 360
           DKDAVERPRFLEGNKTPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKKVEEKRTPRSS
Sbjct: 301 DKDAVERPRFLEGNKTPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKKVEEKRTPRSS 360

Query: 361 KRSSTPKVSAQKMQLSGSKQKIDQDEGLKKRRVVQGQDDGGKFRRKDTEYEDEDDIEELS 420
           KRSSTPKVSAQKMQLSGSKQKIDQDEGLKKRRVVQGQDDGGKFRRKDTEYEDEDDIEELS
Sbjct: 361 KRSSTPKVSAQKMQLSGSKQKIDQDEGLKKRRVVQGQDDGGKFRRKDTEYEDEDDIEELS 420

Query: 421 SSQEDTDEDWTS 433
           SSQEDTDEDWTS
Sbjct: 421 SSQEDTDEDWTS 424

[Close]

BLAST of Carg04876 vs. NCBI nr
Match: XP_023001787.1 (DNA-binding protein RHL1-like [Cucurbita maxima])

HSP 1 Score: 788.9 bits (2036), Expect = 8.9e-225
Identity = 412/432 (95.37%), Postives = 416/432 (96.30%), Query Frame = 0


Query: 1   MARGSSSSKRDEAKGEMDPEIAARKRLKKLAFNNNILSETQAKPQAYLSPSATVLKHHGK 60
           MARGSSSSKRDEAKGEMDPEIAARKRLKKLAF NNILSETQAKPQAYLSPSATVLKHHGK
Sbjct: 1   MARGSSSSKRDEAKGEMDPEIAARKRLKKLAFTNNILSETQAKPQAYLSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYPK 120
           DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYPK 120

Query: 121 NRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPKQMTMGQCGEYD 180
           NRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPK+MTMG+CGEYD
Sbjct: 121 NRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPKEMTMGKCGEYD 180

Query: 181 FNGGAGVASTSKQSVQKKGINRAEENSLKEEHGDDLVDLEDNMTNSMKTTPVRHSERSAG 240
           FNGGAGVASTSKQSVQKKGI+RAEENSLKEEHGDDLVDLEDNMTNSMKTTPVRHSERS G
Sbjct: 181 FNGGAGVASTSKQSVQKKGIDRAEENSLKEEHGDDLVDLEDNMTNSMKTTPVRHSERSGG 240

Query: 241 KVFNFAQAFSKEESAGTYADFSEGEEKNIVIHEPSIGDHASENILFMIIEFTEVVSVDSE 300
           KVFNFAQAFSKEESAGT ADFSEGEEKNIVI+EPSIGDHASE         TEVVSVDSE
Sbjct: 241 KVFNFAQAFSKEESAGTLADFSEGEEKNIVIYEPSIGDHASEK--------TEVVSVDSE 300

Query: 301 DKDAVERPRFLEGNKTPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKKVEEKRTPRSS 360
           DKDAVERPRFLEGNKTPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKKVEEKRTPRSS
Sbjct: 301 DKDAVERPRFLEGNKTPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKKVEEKRTPRSS 360

Query: 361 KRSSTPKVSAQKMQLSGSKQKIDQDEGLKKRRVVQGQDDGGKFRRKDTEYEDEDDIEELS 420
           KRSSTPKVSAQK QLSGSKQKIDQDEGLKKR VVQGQDDGGKF RKDTEYEDEDDIEEL 
Sbjct: 361 KRSSTPKVSAQKKQLSGSKQKIDQDEGLKKRGVVQGQDDGGKFGRKDTEYEDEDDIEELL 420

Query: 421 SSQEDTDEDWTS 433
           SSQEDTDEDWTS
Sbjct: 421 SSQEDTDEDWTS 424

[Close]

BLAST of Carg04876 vs. NCBI nr
Match: XP_023519239.1 (DNA-binding protein RHL1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 733.8 bits (1893), Expect = 3.4e-208
Identity = 389/432 (90.05%), Postives = 391/432 (90.51%), Query Frame = 0


Query: 1   MARGSSSSKRDEAKGEMDPEIAARKRLKKLAFNNNILSETQAKPQAYLSPSATVLKHHGK 60
           MARGSSSSKRDEAKG MDPEIAARKRLKKLAF NNILSETQAKPQAYLSPSATVLKHHGK
Sbjct: 1   MARGSSSSKRDEAKGAMDPEIAARKRLKKLAFTNNILSETQAKPQAYLSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYPK 120
           DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYPK 120

Query: 121 NRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPKQMTMGQCGEYD 180
           NRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPK+MTMGQCGEYD
Sbjct: 121 NRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPKEMTMGQCGEYD 180

Query: 181 FNGGAGVASTSKQSVQKKGINRAEENSLKEEHGDDLVDLEDNMTNSMKTTPVRHSERSAG 240
           FNGGAGVASTSKQSVQKKGINRAEENSLKEEHGDDLVDLEDNMTNSMKTTPVRHSERSAG
Sbjct: 181 FNGGAGVASTSKQSVQKKGINRAEENSLKEEHGDDLVDLEDNMTNSMKTTPVRHSERSAG 240

Query: 241 KVFNFAQAFSKEESAGTYADFSEGEEKNIVIHEPSIGDHASENILFMIIEFTEVVSVDSE 300
           KVFNFAQAFSKEESAGTYADFSEGEEKNIVIHEPSIGDHASE         TEVVSVDSE
Sbjct: 241 KVFNFAQAFSKEESAGTYADFSEGEEKNIVIHEPSIGDHASEK--------TEVVSVDSE 300

Query: 301 DKDAVERPRFLEGNKTPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKKVEEKRTPRSS 360
           DKDAVERPRFLEGN+TPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKKVEEKRTPRSS
Sbjct: 301 DKDAVERPRFLEGNRTPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKKVEEKRTPRSS 360

Query: 361 KRSSTPKVSAQKMQLSGSKQKIDQDEGLKKRRVVQGQDDGGKFRRKDTEYEDEDDIEELS 420
           KRSSTPKVSAQKMQLSGSKQKIDQDEGLKKRRVVQG                        
Sbjct: 361 KRSSTPKVSAQKMQLSGSKQKIDQDEGLKKRRVVQGXXXXXXXXXXXXXXXXXXXXXXXX 420

Query: 421 SSQEDTDEDWTS 433
                 DEDWTS
Sbjct: 421 XXXXXXDEDWTS 424

[Close]

BLAST of Carg04876 vs. NCBI nr
Match: XP_008467323.1 (PREDICTED: DNA-binding protein RHL1 isoform X2 [Cucumis melo])

HSP 1 Score: 669.5 bits (1726), Expect = 7.8e-189
Identity = 358/433 (82.68%), Postives = 384/433 (88.68%), Query Frame = 0


Query: 1   MARGSSSSKRDEAKGEMDPEIAARKRLKKLAFNNNILSETQAKPQAYLSPSATVLKHHGK 60
           MARGSSSSK+DEAKGE++PEI  RKRLKKLAF+NNILSETQAKPQAYLSPSATVLKHHGK
Sbjct: 1   MARGSSSSKKDEAKGEINPEIGERKRLKKLAFSNNILSETQAKPQAYLSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYPK 120
           DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDL TKNP+LYLDFPQGR+KLFGTI+YPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLATKNPVLYLDFPQGRMKLFGTIMYPK 120

Query: 121 NRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPKQMTMGQCGEYD 180
           NRYLTLQFS+GGKNV CEDCFDNMIVFSDAWWIGTKDENPEE  LDFPK++T+GQCGEYD
Sbjct: 121 NRYLTLQFSKGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKELTLGQCGEYD 180

Query: 181 FNGGAGVASTSKQSVQKKGINRAEENSLKEEHGDDLVDLEDNMTNSMKTTPVRHSERSAG 240
           FNGGAGV STSKQSVQKKGIN A ENS K EHGDDLV LE ++TNS+KT PVRHSERSA 
Sbjct: 181 FNGGAGVTSTSKQSVQKKGINPATENSFKGEHGDDLVGLEASVTNSVKTMPVRHSERSAR 240

Query: 241 KVFNFAQAFSKEESAGTYADFSEGEEKNIVIHEPSIGDHASENILFMIIEFTEVVSVDSE 300
           KVFNFA+A S++ES GT  D SEGEEKNIVIHEPSIGDHASE         TE +SV+S 
Sbjct: 241 KVFNFAEASSEDESTGTDTDLSEGEEKNIVIHEPSIGDHASEK--------TEDISVESI 300

Query: 301 DKDAVE-RPRFLEGNKTPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKKVEEKRTPRS 360
           D+DAVE +P FLEGN+T ISK K  SRAKG+AQS  RG LVQPTL SLFKKVEEKRTPRS
Sbjct: 301 DEDAVEIKPSFLEGNQTSISKEKKNSRAKGSAQSDTRG-LVQPTLLSLFKKVEEKRTPRS 360

Query: 361 SKRSSTPKVSAQKMQLSGSKQKIDQDEGLKKRRVVQGQDDGGKFRRKDTEYEDEDDIEEL 420
           SKRSS PKVS QKMQLSGSKQKIDQDEG KKRR V+GQ  GGK +RKDTEYE ED+IEEL
Sbjct: 361 SKRSSVPKVSTQKMQLSGSKQKIDQDEGSKKRRAVRGQ--GGKAQRKDTEYEVEDEIEEL 420

Query: 421 SSSQEDTDEDWTS 433
           SSSQEDTDEDWTS
Sbjct: 421 SSSQEDTDEDWTS 422

[Close]

BLAST of Carg04876 vs. NCBI nr
Match: XP_022137362.1 (DNA-binding protein RHL1 [Momordica charantia])

HSP 1 Score: 662.9 bits (1709), Expect = 7.3e-187
Identity = 348/433 (80.37%), Postives = 377/433 (87.07%), Query Frame = 0


Query: 1   MARGSSSSKRDEAKGEMDPEIAARKRLKKLAFNNNILSETQAKPQAYLSPSATVLKHHGK 60
           MARGSSSSKR+   GE+DPE A RKRLKKLAF+NN+LS+TQAKPQAYLSPSATVLKHHGK
Sbjct: 1   MARGSSSSKREATNGELDPEAATRKRLKKLAFSNNVLSQTQAKPQAYLSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYPK 120
           DIVKKSQRKNRFLFSFSGLL PVSGGKIGELKDLGTKNPILYLDFPQGR+KLFGTI+YPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLTPVSGGKIGELKDLGTKNPILYLDFPQGRMKLFGTIMYPK 120

Query: 121 NRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPKQMTMGQCGEYD 180
           NRYLTLQFSRGGKNV CED FD+M+VFSDAWWIGTKDENPEE RLD PK++T G+CGEYD
Sbjct: 121 NRYLTLQFSRGGKNVTCEDYFDSMVVFSDAWWIGTKDENPEEARLDIPKELTTGKCGEYD 180

Query: 181 FNGGAGVASTSKQSVQKKGINRAEENSLKEEHGDDLVDLEDNMTNSMKTTPVRHSERSAG 240
           FNGGAGV STSK SVQKKGIN AEE+S K E GD L DLEDNM NS+ TTPVRHSERSAG
Sbjct: 181 FNGGAGVTSTSKHSVQKKGINHAEEHSHKGERGDGLADLEDNMINSINTTPVRHSERSAG 240

Query: 241 KVFNFAQAFSKEESAGTYADFSEGEEKNIVIHEPSIGDHASENILFMIIEFTEVVSVDSE 300
           KVF FA+A S++ES G+Y D SEGEEKNIVIHEPSIGDHASE         TE +SVD++
Sbjct: 241 KVFKFAEASSEDESTGSYDDLSEGEEKNIVIHEPSIGDHASEK--------TEDLSVDAK 300

Query: 301 DKDAVERPRFLEGNKTPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKKVEEKRTPRSS 360
           D+D + RP FLEGN+  ISK K  SRAKGN +S NRGL VQ TLPSLFKKVEEKRTPRSS
Sbjct: 301 DEDTMGRPPFLEGNQVLISKPKKVSRAKGNVESNNRGLFVQSTLPSLFKKVEEKRTPRSS 360

Query: 361 KRSSTPKVSAQKMQLSGSKQKIDQDEGLKKRRVVQGQDDGGKFRRKDTEYEDEDDIEELS 420
           KRSS PKVSA+KMQLSGSK+KI+QDEG KKRR V+GQDDGGK  RKD EYE EDDIEELS
Sbjct: 361 KRSSAPKVSAEKMQLSGSKRKIEQDEGSKKRRAVRGQDDGGKVPRKDAEYEVEDDIEELS 420

Query: 421 SSQ-EDTDEDWTS 433
           SSQ EDTDEDWTS
Sbjct: 421 SSQEEDTDEDWTS 425

[Close]

BLAST of Carg04876 vs. TAIR10
Match: AT1G48380.2 (root hair initiation protein root hairless 1 (RHL1))

HSP 1 Score: 260.4 bits (664), Expect = 2.0e-69
Identity = 172/410 (41.95%), Postives = 222/410 (54.15%), Query Frame = 0


Query: 1   MARGSSSSKRDEAKGEM-DPEIAARKRLKKLAFNNNILSETQAKPQAYLSPSATVLKHHG 60
           M R SSS K     G+  D E   RKRLK LA +N +LS++ AK  + L PS  VLKHHG
Sbjct: 1   MVRASSSKKGGSKGGDKDDAESKQRKRLKTLALDNQLLSDSPAKSHSSLKPSKQVLKHHG 60

Query: 61  KDIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYP 120
            DI++KSQRKNRFLFSF GLLAP+S   IG+L  L TKNP+LYL+FPQGR+KLFGTI+YP
Sbjct: 61  TDIIRKSQRKNRFLFSFPGLLAPISAATIGDLDRLSTKNPVLYLNFPQGRMKLFGTILYP 120

Query: 121 KNRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPKQMT------- 180
           KNRYLTLQFSRGGKNV+C+D FDNMIVFS++WWIGTK+ENPEE RLDFPK++        
Sbjct: 121 KNRYLTLQFSRGGKNVLCDDYFDNMIVFSESWWIGTKEENPEEARLDFPKELAQVDTFHL 180

Query: 181 ------------------------MGQCGEYDFNGGA-GVASTSKQSVQKKGINRAEENS 240
                                     +  E+DF GGA G AS  K +  + G    E +S
Sbjct: 181 FLHFLFKTMVATEMFNMIRRILWFQAENTEFDFQGGAGGAASVKKLASPEIGSQPTETDS 240

Query: 241 LKEEHGDDLVD----LEDNM--------TNSMKTTPVRHSERSAGKVFNFAQAFSKEESA 300
            + ++ D L +    L+D +                   S+R++GK FNFA+  S+  S 
Sbjct: 241 PEVDNEDVLSEDGEFLDDKIQXXXXXXXXXXXXXXXXXXSQRNSGKKFNFAETSSEASSG 300

Query: 301 GTYADFSEGEEKNIVIHEPSIGDHASENILFMIIEFTEVVSVDSEDKDAVERPRFLEGNK 360
            +  + S+ +EK ++  EP     + E               +S+D +         G  
Sbjct: 301 ESEGNTSDEDEKPLL--EPESSTRSRE---------------ESQDGN---------GIT 360

Query: 361 TPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKKVEEKRTPRSSKRSST 366
              SK      AK          LVQ TL +LFKK EEK    S  +SS+
Sbjct: 361 ASASKLPEELPAKREKLKSKDSKLVQATLSNLFKKAEEKTAGTSKAKSSS 384

[Close]

BLAST of Carg04876 vs. Swiss-Prot
Match: sp|O81242|RHL1_ARATH (DNA-binding protein RHL1 OS=Arabidopsis thaliana OX=3702 GN=RHL1 PE=1 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 4.8e-73
Identity = 172/379 (45.38%), Postives = 222/379 (58.58%), Query Frame = 0


Query: 1   MARGSSSSKRDEAKGEM-DPEIAARKRLKKLAFNNNILSETQAKPQAYLSPSATVLKHHG 60
           M R SSS K     G+  D E   RKRLK LA +N +LS++ AK  + L PS  VLKHHG
Sbjct: 1   MVRASSSKKGGSKGGDKDDAESKQRKRLKTLALDNQLLSDSPAKSHSSLKPSKQVLKHHG 60

Query: 61  KDIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYP 120
            DI++KSQRKNRFLFSF GLLAP+S   IG+L  L TKNP+LYL+FPQGR+KLFGTI+YP
Sbjct: 61  TDIIRKSQRKNRFLFSFPGLLAPISAATIGDLDRLSTKNPVLYLNFPQGRMKLFGTILYP 120

Query: 121 KNRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPKQMTMGQCGEY 180
           KNRYLTLQFSRGGKNV+C+D FDNMIVFS++WWIGTK+ENPEE RLDFPK++   +  E+
Sbjct: 121 KNRYLTLQFSRGGKNVLCDDYFDNMIVFSESWWIGTKEENPEEARLDFPKELAQAENTEF 180

Query: 181 DFNGGA-GVASTSKQSVQKKGINRAEENSLKEEHGDDLVD----LEDNM--------TNS 240
           DF GGA G AS  K +  + G    E +S + ++ D L +    L+D +           
Sbjct: 181 DFQGGAGGAASVKKLASPEIGSQPTETDSPEVDNEDVLSEDGEFLDDKIQXXXXXXXXXX 240

Query: 241 MKTTPVRHSERSAGKVFNFAQAFSKEESAGTYADFSEGEEKNIVIHEPSIGDHASENILF 300
                   S+R++GK FNFA+  S+  S  +  + S+ +EK ++  EP     + E    
Sbjct: 241 XXXXXXXXSQRNSGKKFNFAETSSEASSGESEGNTSDEDEKPLL--EPESSTRSRE---- 300

Query: 301 MIIEFTEVVSVDSEDKDAVERPRFLEGNKTPISKSKNGSRAKGNAQSGNRGLLVQPTLPS 360
                      +S+D +         G     SK      AK          LVQ TL +
Sbjct: 301 -----------ESQDGN---------GITASASKLPEELPAKREKLKSKDSKLVQATLSN 353

Query: 361 LFKKVEEKRTPRSSKRSST 366
           LFKK EEK    S  +SS+
Sbjct: 361 LFKKAEEKTAGTSKAKSSS 353

[Close]

BLAST of Carg04876 vs. TrEMBL
Match: tr|A0A1S3CTA5|A0A1S3CTA5_CUCME (DNA-binding protein RHL1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103504698 PE=4 SV=1)

HSP 1 Score: 669.5 bits (1726), Expect = 5.2e-189
Identity = 358/433 (82.68%), Postives = 384/433 (88.68%), Query Frame = 0


Query: 1   MARGSSSSKRDEAKGEMDPEIAARKRLKKLAFNNNILSETQAKPQAYLSPSATVLKHHGK 60
           MARGSSSSK+DEAKGE++PEI  RKRLKKLAF+NNILSETQAKPQAYLSPSATVLKHHGK
Sbjct: 1   MARGSSSSKKDEAKGEINPEIGERKRLKKLAFSNNILSETQAKPQAYLSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYPK 120
           DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDL TKNP+LYLDFPQGR+KLFGTI+YPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLATKNPVLYLDFPQGRMKLFGTIMYPK 120

Query: 121 NRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPKQMTMGQCGEYD 180
           NRYLTLQFS+GGKNV CEDCFDNMIVFSDAWWIGTKDENPEE  LDFPK++T+GQCGEYD
Sbjct: 121 NRYLTLQFSKGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKELTLGQCGEYD 180

Query: 181 FNGGAGVASTSKQSVQKKGINRAEENSLKEEHGDDLVDLEDNMTNSMKTTPVRHSERSAG 240
           FNGGAGV STSKQSVQKKGIN A ENS K EHGDDLV LE ++TNS+KT PVRHSERSA 
Sbjct: 181 FNGGAGVTSTSKQSVQKKGINPATENSFKGEHGDDLVGLEASVTNSVKTMPVRHSERSAR 240

Query: 241 KVFNFAQAFSKEESAGTYADFSEGEEKNIVIHEPSIGDHASENILFMIIEFTEVVSVDSE 300
           KVFNFA+A S++ES GT  D SEGEEKNIVIHEPSIGDHASE         TE +SV+S 
Sbjct: 241 KVFNFAEASSEDESTGTDTDLSEGEEKNIVIHEPSIGDHASEK--------TEDISVESI 300

Query: 301 DKDAVE-RPRFLEGNKTPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKKVEEKRTPRS 360
           D+DAVE +P FLEGN+T ISK K  SRAKG+AQS  RG LVQPTL SLFKKVEEKRTPRS
Sbjct: 301 DEDAVEIKPSFLEGNQTSISKEKKNSRAKGSAQSDTRG-LVQPTLLSLFKKVEEKRTPRS 360

Query: 361 SKRSSTPKVSAQKMQLSGSKQKIDQDEGLKKRRVVQGQDDGGKFRRKDTEYEDEDDIEEL 420
           SKRSS PKVS QKMQLSGSKQKIDQDEG KKRR V+GQ  GGK +RKDTEYE ED+IEEL
Sbjct: 361 SKRSSVPKVSTQKMQLSGSKQKIDQDEGSKKRRAVRGQ--GGKAQRKDTEYEVEDEIEEL 420

Query: 421 SSSQEDTDEDWTS 433
           SSSQEDTDEDWTS
Sbjct: 421 SSSQEDTDEDWTS 422

[Close]

BLAST of Carg04876 vs. TrEMBL
Match: tr|A0A0A0LVZ6|A0A0A0LVZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043140 PE=4 SV=1)

HSP 1 Score: 649.0 bits (1673), Expect = 7.3e-183
Identity = 355/442 (80.32%), Postives = 383/442 (86.65%), Query Frame = 0


Query: 1   MARGSSSSKRDEAKGEMDPEIAARKRLKKLAFNNNILSETQAKPQAYLSPSATVLKHHGK 60
           MARG SSSK+DEAKGE++PEIA RKRLKKLAF+N+ILSETQA+PQAYLSPSATVLKHHGK
Sbjct: 1   MARG-SSSKKDEAKGEINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYPK 120
           DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDL TKNPILYLDFPQGR+KLFGTI+YPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYPK 120

Query: 121 NRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPKQMTMGQCGEYD 180
           NRYLTLQFSRGGKNV CEDCFDNMIVFSDAWWIGTKDENPEE  LDFPK +TMGQCGEYD
Sbjct: 121 NRYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCGEYD 180

Query: 181 FNGGAGV---------ASTSKQSVQKKGINRAEENSLKEEHGDDLVDLEDNMTNSMKTTP 240
           FNGGAGV             KQSVQ+KGIN A ENS K EHGDDLV LE ++TNS+KTTP
Sbjct: 181 FNGGAGVXXXXXXXXXXXXXKQSVQRKGINPAAENSFKGEHGDDLVGLEASVTNSIKTTP 240

Query: 241 VRHSERSAGKVFNFAQAFSKEESAGTYADFSEGEEKNIVIHEPSIGDHASENILFMIIEF 300
           VRHSERSA KVFNFA+A S++ESAGT AD SEGEEKNIVIHEPSIGDHASE         
Sbjct: 241 VRHSERSARKVFNFAEASSEDESAGTDADLSEGEEKNIVIHEPSIGDHASEK-------- 300

Query: 301 TEVVSVDSEDKDAVE-RPRFLEGNKTPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKK 360
           TE +SV+S D+DAV+ +P FLEGN+T ISK K   RAKG+AQS  RG LVQPTL SLFKK
Sbjct: 301 TEDISVESIDEDAVKIKPPFLEGNQTSISKEKKSFRAKGSAQSDTRG-LVQPTLLSLFKK 360

Query: 361 VEEKRTPRSSKRSSTPKVSAQKMQLSGSKQKIDQDEGLKKRRVVQGQDDGGKFRRKDTEY 420
           VEEKRTPRSSKRSS PKVS QKMQLSGSKQKIDQDEG KKRRVV+GQ  GGK ++KDTEY
Sbjct: 361 VEEKRTPRSSKRSSAPKVSTQKMQLSGSKQKIDQDEGSKKRRVVRGQ--GGKAQKKDTEY 420

Query: 421 EDEDDIEELSSSQEDTDEDWTS 433
           E ED+IE+LSSSQEDTDEDWTS
Sbjct: 421 EVEDEIEDLSSSQEDTDEDWTS 430

[Close]

BLAST of Carg04876 vs. TrEMBL
Match: tr|A0A1S4DVK0|A0A1S4DVK0_CUCME (DNA-binding protein RHL1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103504698 PE=4 SV=1)

HSP 1 Score: 562.4 bits (1448), Expect = 8.9e-157
Identity = 292/357 (81.79%), Postives = 315/357 (88.24%), Query Frame = 0


Query: 1   MARGSSSSKRDEAKGEMDPEIAARKRLKKLAFNNNILSETQAKPQAYLSPSATVLKHHGK 60
           MARGSSSSK+DEAKGE++PEI  RKRLKKLAF+NNILSETQAKPQAYLSPSATVLKHHGK
Sbjct: 1   MARGSSSSKKDEAKGEINPEIGERKRLKKLAFSNNILSETQAKPQAYLSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYPK 120
           DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDL TKNP+LYLDFPQGR+KLFGTI+YPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLATKNPVLYLDFPQGRMKLFGTIMYPK 120

Query: 121 NRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPKQMTMGQCGEYD 180
           NRYLTLQFS+GGKNV CEDCFDNMIVFSDAWWIGTKDENPEE  LDFPK++T+GQCGEYD
Sbjct: 121 NRYLTLQFSKGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKELTLGQCGEYD 180

Query: 181 FNGGAGVASTSKQSVQKKGINRAEENSLKEEHGDDLVDLEDNMTNSMKTTPVRHSERSAG 240
           FNGGAGV STSKQSVQKKGIN A ENS K EHGDDLV LE ++TNS+KT PVRHSERSA 
Sbjct: 181 FNGGAGVTSTSKQSVQKKGINPATENSFKGEHGDDLVGLEASVTNSVKTMPVRHSERSAR 240

Query: 241 KVFNFAQAFSKEESAGTYADFSEGEEKNIVIHEPSIGDHASENILFMIIEFTEVVSVDSE 300
           KVFNFA+A S++ES GT  D SEGEEKNIVIHEPSIGDHASE         TE +SV+S 
Sbjct: 241 KVFNFAEASSEDESTGTDTDLSEGEEKNIVIHEPSIGDHASEK--------TEDISVESI 300

Query: 301 DKDAVE-RPRFLEGNKTPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKKVEEKRT 357
           D+DAVE +P FLEGN+T ISK K  SRAKG+AQS  RG LVQPTL SLFKKVEEK T
Sbjct: 301 DEDAVEIKPSFLEGNQTSISKEKKNSRAKGSAQSDTRG-LVQPTLLSLFKKVEEKET 348

[Close]

BLAST of Carg04876 vs. TrEMBL
Match: tr|A0A1S4DWD5|A0A1S4DWD5_CUCME (DNA-binding protein RHL1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504698 PE=4 SV=1)

HSP 1 Score: 560.5 bits (1443), Expect = 3.4e-156
Identity = 301/388 (77.58%), Postives = 329/388 (84.79%), Query Frame = 0


Query: 1   MARGSSSSKRDEAKGEMDPEIAARKRLKKLAFNNNILSETQAKPQAYLSPSATVLKHHGK 60
           MARGSSSSK+DEAKGE++PEI  RKRLKKLAF+NNILSETQAKPQAYLSPSATVLKHHGK
Sbjct: 1   MARGSSSSKKDEAKGEINPEIGERKRLKKLAFSNNILSETQAKPQAYLSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIVYPK 120
           DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDL TKNP+LYLDFPQGR+KLFGTI+YPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLATKNPVLYLDFPQGRMKLFGTIMYPK 120

Query: 121 NRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPKQMTMGQCGEYD 180
           NRYLTLQFS+GGKNV CEDCFDNMIVFSDAWWIGTKDENPEE  LDFPK++T+GQCGEYD
Sbjct: 121 NRYLTLQFSKGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKELTLGQCGEYD 180

Query: 181 FNGGAGVASTSKQSVQKKGINRAEENSLKEEHGDDLVDLEDNMTNSMKTTPVRHSERSAG 240
           FNGGAGV STSKQSVQKKGIN A ENS K EHGDDLV LE ++TNS+KT PVRHSERSA 
Sbjct: 181 FNGGAGVTSTSKQSVQKKGINPATENSFKGEHGDDLVGLEASVTNSVKTMPVRHSERSAR 240

Query: 241 KVFNFAQAFSKEESAGTYADFSEGEEKNIVIHEPSIGDHASENILFMIIEFTEVVSVDSE 300
           KVFNFA+A S++ES GT  D SEGEEKNIVIHEPSIGDHASE         TE +SV+S 
Sbjct: 241 KVFNFAEASSEDESTGTDTDLSEGEEKNIVIHEPSIGDHASEK--------TEDISVESI 300

Query: 301 DKDAVE-RPRFLEGNKTPISKSKNGSRAKGNAQSGNRGLLVQPTLPSLFKKVEEKRTPR- 360
           D+DAVE +P FLEGN+T ISK K  SRAKG+AQS  RG LVQPTL SLFKKVEEK  P+ 
Sbjct: 301 DEDAVEIKPSFLEGNQTSISKEKKNSRAKGSAQSDTRG-LVQPTLLSLFKKVEEKFLPKR 360

Query: 361 -----SSKRSSTPKVSAQKMQLSGSKQK 382
                 SKR +  K   +K  LSG K++
Sbjct: 361 CSCLVQSKRLTRMK-DQRKGGLSGDKEE 378

[Close]

BLAST of Carg04876 vs. TrEMBL
Match: tr|A0A2I4GZG7|A0A2I4GZG7_9ROSI (DNA-binding protein RHL1 OS=Juglans regia OX=51240 GN=LOC109012217 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.3e-111
Identity = 241/448 (53.79%), Postives = 308/448 (68.75%), Query Frame = 0


Query: 1   MARGSSSSKRDEAK---GEMDPEIAARKRLKKLAFNNNILSETQAKPQAYLSPSATVLKH 60
           MARGSSSS + EA+    E+ P +  RKRLK+LAF NNILSET A+    LSPS  V+KH
Sbjct: 1   MARGSSSSSKKEARESSRELGPVVTERKRLKRLAFANNILSETPAEVHQQLSPSKAVIKH 60

Query: 61  HGKDIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRLKLFGTIV 120
           HGKDI+KKSQRKN+FLFSF GLLAPV+GGKIGELKDLGTKNP+LYLDFPQGR+K FGTIV
Sbjct: 61  HGKDILKKSQRKNKFLFSFPGLLAPVAGGKIGELKDLGTKNPVLYLDFPQGRMKFFGTIV 120

Query: 121 YPKNRYLTLQFSRGGKNVMCEDCFDNMIVFSDAWWIGTKDENPEEDRLDFPKQMTMGQCG 180
           YP NRYL+LQF RGGKNVMCED FDNMIVFS+AWWIG KDENPEE RL+FPK++  GQ  
Sbjct: 121 YPTNRYLSLQFPRGGKNVMCEDVFDNMIVFSEAWWIGRKDENPEEARLNFPKELDEGQLI 180

Query: 181 EYDFNGGAGVASTSKQSVQKKGINRAEENSLKEEHGDDLVDLEDNMTNSMKTTPVRHSER 240
           EYDF GGAG AST++ S+ K  I   EE S K E   DL D E+ + +  + TPVRHSER
Sbjct: 181 EYDFKGGAGAASTNQPSLHKTEIRLVEEQSPKVEFEVDLSDGENMLKDFTEETPVRHSER 240

Query: 241 SAGKVFNFAQAFSKEESAGTYADFSEGEEKNIVIHEPSIGDHASENILFMIIEFTEVVSV 300
           +AG+ FNFA++ S E+S     D S  EEK +V       D ++ N      E    V++
Sbjct: 241 TAGRTFNFAESSSGEDSVECNDDVSSSEEKKVV-----EVDSSTTNCTAGKTENLSNVNI 300

Query: 301 DSEDKDAVER---PRFLEGNKTPISKSKN-------GSRAKGNAQSGNRGLLVQPTLPSL 360
           D + KDAVER   P   EG+   +SK K        G+ +KG + + + G LVQ T+ +L
Sbjct: 301 DIDYKDAVERTQIPEQDEGDVVLVSKLKRQSHTATPGTESKGMSHTSD-GSLVQATISTL 360

Query: 361 FKKVEEKRTPRSSKRSSTPKVSAQKMQLSGSKQKIDQDEGLKKRRVVQGQDDGGKFRRKD 420
           FKKVE K  PR+ ++S +P+VS QK + + SK+  ++D   KK +V++ +D GG+   K 
Sbjct: 361 FKKVEGKIAPRNPRKSPSPRVSGQKSRSTESKRSRNEDGPRKKAKVIRAKDAGGRAMAKK 420

Query: 421 TEYEDEDDIEELSSSQED---TDEDWTS 433
            +  ++DDIE+ SSS +D   +D+DW +
Sbjct: 421 KDEIEDDDIEQFSSSSQDGHGSDDDWAA 442

The following BLAST results are available for this feature:

BLAST of Carg04876 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924051.1	1.1e-227	96.30	DNA-binding protein RHL1-like [Cucurbita moschata]	[more]
XP_023001787.1	8.9e-225	95.37	DNA-binding protein RHL1-like [Cucurbita maxima]	[more]
XP_023519239.1	3.4e-208	90.05	DNA-binding protein RHL1-like [Cucurbita pepo subsp. pepo]	[more]
XP_008467323.1	7.8e-189	82.68	PREDICTED: DNA-binding protein RHL1 isoform X2 [Cucumis melo]	[more]
XP_022137362.1	7.3e-187	80.37	DNA-binding protein RHL1 [Momordica charantia]	[more]

BLAST of Carg04876 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48380.2	2.0e-69	41.95	root hair initiation protein root hairless 1 (RHL1)	[more]

BLAST of Carg04876 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O81242\|RHL1_ARATH	4.8e-73	45.38	DNA-binding protein RHL1 OS=Arabidopsis thaliana OX=3702 GN=RHL1 PE=1 SV=1	[more]

BLAST of Carg04876 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CTA5\|A0A1S3CTA5_CUCME	5.2e-189	82.68	DNA-binding protein RHL1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103504698 PE=4...	[more]
tr\|A0A0A0LVZ6\|A0A0A0LVZ6_CUCSA	7.3e-183	80.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043140 PE=4 SV=1	[more]
tr\|A0A1S4DVK0\|A0A1S4DVK0_CUCME	8.9e-157	81.79	DNA-binding protein RHL1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103504698 PE=4...	[more]
tr\|A0A1S4DWD5\|A0A1S4DWD5_CUCME	3.4e-156	77.58	DNA-binding protein RHL1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504698 PE=4...	[more]
tr\|A0A2I4GZG7\|A0A2I4GZG7_9ROSI	3.3e-111	53.79	DNA-binding protein RHL1 OS=Juglans regia OX=51240 GN=LOC109012217 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0042023	DNA endoreduplication

Vocabulary: **INTERPRO**
Term	Definition
IPR038859	RHL1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042023	DNA endoreduplication
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04876-RA	Carg04876-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 382..410
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 302..432
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 316..340
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 362..381
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 411..432
IPR038859	DNA-binding protein RHL1	PANTHER	PTHR35698	FAMILY NOT NAMED	coord: 11..427

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04876	Cla008383	Watermelon (97103) v1	carwmB0385
Carg04876	Csa1G043140	Cucumber (Chinese Long) v2	carcuB0415
Carg04876	MELO3C002168	Melon (DHL92) v3.5.1	carmeB0393
Carg04876	ClCG01G014820	Watermelon (Charleston Gray)	carwcgB0380
Carg04876	CSPI01G07540	Wild cucumber (PI 183967)	carcpiB0418
Carg04876	Cucsa.122270	Cucumber (Gy14) v1	carcgyB0452
Carg04876	CmaCh18G001000	Cucurbita maxima (Rimu)	carcmaB0541
Carg04876	CmaCh13G009600	Cucurbita maxima (Rimu)	carcmaB0540
Carg04876	CmoCh18G000770	Cucurbita moschata (Rifu)	carcmoB0527
Carg04876	CmoCh13G009940	Cucurbita moschata (Rifu)	carcmoB0526
Carg04876	Lsi02G002720	Bottle gourd (USVL1VR-Ls)	carlsiB353
Carg04876	Cp4.1LG09g10920	Cucurbita pepo (Zucchini)	carcpeB0539
Carg04876	Cp4.1LG20g01720	Cucurbita pepo (Zucchini)	carcpeB0544
Carg04876	CsGy1G007420	Cucumber (Gy14) v2	carcgybB0393
Carg04876	MELO3C002168.2	Melon (DHL92) v3.6.1	carmedB0397
Carg04876	CsaV3_1G007510	Cucumber (Chinese Long) v3	carcucB0418
Carg04876	Cla97C01G013830	Watermelon (97103) v2	carwmbB0406
Carg04876	Bhi08G001113	Wax gourd	carwgoB0473

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg04876	Carg06655	Silver-seed gourd	carcarB411

The following block(s) are covering this gene:

None