ClCG01G014820 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G014820
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	DNA-binding protein RHL1
Location	CG_Chr01 : 29160066 .. 29170713 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGAGTCAAGGATCCCCAAGAGTGAACGGCAGTCCGTAGCTGACTATCGGCATCAGAAATGGCGCGAGGATCATCGTCTTCAAAGAGGGACGAAGCAAAAGGAGAAATCGATCCGGAGATTGCAGCACGAAAGCGGCTTAAGAAGCTCGCATTCTCCAATCACATACTTTCAGAGACCCAGGCAAAGCCTCAGGCGTATCTGAGCCCTTCAGCGACGGTTCTGAAGCACCATGGCAAAGACATTGTCAAGAAATCTCAGCGAAAGAACAGGTTCCTCTTCTCCTTTTCAGGCTTGCTCGCTCCCGTCAGTGGAGGCAAGATTGGCGAGCTCAAAGATTTGGGAACCAAGAATCCTATTCTCTATCTCGATTTTCCTCAGGTTCGTCTGTTCTTCCATGCTCTAAACGCCTTTCTGTTTTTCTCTTCTTTGAAAGTGTCATACAGTCTCCTTCACTTTTTTTTTTTTTTTTTTTTTCATACTGTTTCGTTGTCGTTTTTAGAATGATTCTTGTAGCCTGGGAATTAGCAATTATTTGCCATTTTCATCCACTCCTAAAGATTTGATAGATAAACCCCAATATAAAACTCCAGAGTTTTTCCATGTTCCTTGTATACCTACTCCTTGCCTTCTGGATTCTACAAAATAGAGGAGTTATACTTTTCGCAGGGAATACCCGCGATAAACTTGGAGGGATAGGTGTCCAGTGTTCTGAACTCAGAAAAGACTATGAGAGTATAGGATGAGAAAATTAGAGTTGCATCGATGAGATAATAGTAACTGAACGATCGGAAATGTATTATGATTTAAAACGATGGTTTCTAGAGGAGGGTGATTTGGATGCTGGTGTTACAAAATTGAAGATGTGGGCCGGGCATATTCTGTAAAAGATTTGAACCAGTATACTAGCGAAGAAAGCATTGGCAGGGATCAATAAGCTGCAACTAGGCCTCTATCATGAAGGAGTTTGGTGTACGTTCTTGCGGGGTTGAATGGCTGGTGTTTGAAGGGTAAACCAAGATATTTGTGGAGGTGTGCTGCTCAGGCCTTTTTGTGGGAGATTTGGCTGGAAAGGAACTGTAGAAACTTCGAAGATAAAGCTGCGAATTTTACTTCTACTTGGTGGTGTCTTAGGCTCTTTATCATTAGATAACATAGGGATCATCTCAAAACCAATTGGAAATGAGAGGAGTAGTTTATCTATCTTATTAAGTGTGTGAGGTCCCTTATTTTTTTGATGTGGGATCCTCAACTTGCCCCTCAAGATGGTGCCTCTTCGGATTCACCATTTTTTTTATCAGATCACAGTTTCTTTTTATTGGGACCGAATACCTGTTTGAGCTTTTTGGACTCTAATGCCATATTAGATAATGTGGGGTTCATCTCAAAACCAATTGGCAATGAGAGGGAGTAGCCCATTTTTCTTATTAAGAGTTTGAGATCTCACAACATTTGCAACATCATTCTTTGTATTAGTTCCTTCTCCAGATACTTCATGATTGGAAGGCTTTTCTGCTTAGGTTTTGATGGGAGGAGGGATCCCTCTACTCCCTCTAGGCTGTGATCTTTTTTTTCTTTTTCTTTTTTCTTTTTTTGGGTGCCTTTCAAACTTTTCTCAAGCATTGTAATATGTCATCGCTGTGGGACTTGCAATGTGCACTGTACTTGAAGGATTTCTGTGAAGCAAGATCAAAAGCTACTTGTTGGTAAAATTATCATTAGAAGTACATATAGTTAAGTAATCAGGAAACCGTTTCGTGGCATAACAAATTGTAATCCACAATTTAATCTATTAAAGATTCATGAGCTTCAAGAGAAAGTGGATTATTGGAATTTGCAAATTCCACTTAACGAATTTTGTCGTTCCCCAAGGATTGAAAAACCTAAATGGTGATAAATCTCTTTATTATTGAATTGAAACATAATGGTTATGGGCAACTGCTGAGCAATATTATTTCAATTATTGATCAGTAAAGGGTTTTTCTTTCTTTTTTTTTTTTTCTTTTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATTTTTGAGTAATTTTGATTAGTCAATTCTGCATAATTAAAGACAAGCTTTTAATCACAAAGAATGTGAAGTTTGTATTGTAATAGATAAGGCATGATTAATATTGGAGGATTTTGGTTTATTTGGAGTTCATGTAGTTGTTATCAGTATCTATCAATTATTGTATTTTGGGTTATTATTGTTATTATCATTATTATTATTTTTAAATGTCAAAAAAAAAAAAAAAAGAACTCCATGAAATTAATTTACTATTTGAGTCCACAGCTTTGAAACAAGTTAAATATTGGCTTATTATTTATTTCTACTTGGAAAATGAATGCAAAAGTATATTGTTGGGTATGCGCAAGCTAGCATGGATGCTCACAGATATATACATTTATAAAGTATATAAAAGCCTGATTTGAAGTGTAAATTGCCTTTCTGAAGTTTCCAGAAATATCCTTTTTTTTGTTCTCCCTTTCTCTCTCTCGAATGTTGATGCAGATTTTATGTGGTCATGAAGCATCCAGTGGTAGAATTGTTCTGATTACTATTTCTTTTGCTTTTCAGGGGCGTATGAAGTTGTTTGGAACTATTATGTATCCGAAGAACAAATATTTGACTCTGCAGTTCTCTAGAGGTGGAAAGAATGTGATGTGTGAAGATTATTTTGATAATATGGTTTGTCCTTTTGCTTTTCCTTTTGTCCTCCTTTTTTGGCAACTTCATTTCTCTTCATTTTCATCAAGTGCTTCAATGAAAGTGTCCCCTCAACTTGTTAGATCTGTAGCACAATAAATGATAGTTGTAGCTGGTTTTATCAATATGATGTGAATGCTTCTTTATGTACTACTTTTAATTTTTTTTCTTTTCCAGTTAAGCCGTCATTCTCTGTGATTTTTCTTTCAAAGATAAGGCAAAAATTCTCTGGTGCAATGCAAACTGGGCTCTCCTTTGGGGAGCTTGGTTAAAGGAATAAAAGTAAAGAACCTTTCATGGGAAAGATCAAAATTTTCAAGGACTTTCAGAAAGTTATTGTTTGTGGCCTCCCCTTGGAGTACCTTATTTAGTTCTTTATGTATCTACACTTCTATTCATTCTATTATTGCCATTGGAGACTGGAGAGTGTTTTAACTTCTTGGCTTTTCTGAGTCTTTTCTCACATGTAACTTTTTCATGTCAATAAAATGCATTTTTTCTCTTTTTTCTTTTTGTTTAAAAAAATGTTTATCCTTTTAGTTTGTTAGCACTCTTGTTTAGACCTAATGAATAAGCTTTTCATTTGGAATAGTTTTGTTTTTAGATAGTTTCTTAATACAGATAAGATTGTGGGGTGCTTTTTTTCCCCTCCCTTTTAGTAAGGAGGTTCTTAACCTTTATATAACTTTGCCGTGAATTCACTAATGCATCAGATTAATCAGCTGACTTTAGTTTCCCTTAAAACCCTGGTTAATCTCAATGCGGAAATTCTTATCTTAATCTTGTTATAAAAGTCAATACAGACGGTATCACAGTGAACAAACAAAGTAGAACTGCAATGAAGCACGGTGCCTAAAATGCTGATGCTCAAGGTGCAAGACTTCTGTTAGTATTAGGTCTTTTGTCCAAGCAGACAAGTAGTCAAGCATTGGCCACAGCTTGTGAACATCTAGCAAGATCTCTTCTTAAAATGATAGGTTTGCCCGATAAAAGTGTGGCAACGACAATCATACCCCACCAGAAAAAGACAAAAATGGAAAAAAACAACAGTTTGAGTTATCCTGGTGTTTTGGTTAAAGAGGCCTCGTGTAGATACTATATGGTGTCATTTTCACCCTGTTGGTATTTACTATCTTCAGATTAAGAGCATTTGTTCAGATTGACGTTCTTAATTTAATCATTGTACTGTCCTAAACACTTCTTTCTTGGTATTTAAGAAATATGCCCTCGAAGCATGTACATATGATTCAACGATTCTTTTCTCCGACTGCAGATTGTCTTTTCTGATGCATGGTGGATTGGAACTAAAGATGAAAATCCAGAGGAGGCTTGCCTTGATTTTCCTAAAGAATTGACTACGGTAAGTTTCTTGATAATTTTTAGGTCCTTGAAATGCATTTTTTTTTTTGTTTTCTTGAGTATCCCTATATTTCCATGTAAAATTTCTGCAAGCATCTCATTTCTCAAGGTCATTTATGGTGCAAAATAATGGAAATGCAGCTCTTATGAGAGCCACAGACTAATTTATACTGTGAAAGGACTATAATTTTTGTTGTCTAAACTTCTTAATTTTCCTCGTGTGATCATTTAGCAAAAAGAGACGTAACTTAACTTGGCAGTAATGTTACTTCTTACTTTTTTAAATAGTCGTTTAGTTATTTTTAATTTGGAACCCTGCTTGGGATCTTCATGATGCTGATTTTATTACTACACGAAGCCTACTACTACTGATTCTAACTTTTCTATTATGTTTCTATAATGAAGTTTTCCGTTGGGCTGGTCGATATCATTGCTCTAGGTTACTGTTTGATCCATATTTGTGTACTTTTTCCTGTTCCGTGGATTTCCCTTTCTTATTATATTTTTCTCCTTTAGTACACTCTTTTACCACTTCTAATTAGCTAGAATAGTTGTATAAATTCTAGTGCCGTATCTTTCTTGGGGGGCTTATTTATGAAGGATTCTATATGGTTGTTATTTTGGGGCTGCACTGTTCTATTTGGGGCTGGTGCTGTTTTTCCTGTCTTTCTGTTGTACTTACATTTTCCGAATTGAAGCATCTTGAGAGAGAGAGAGAGAGAGCGTTTGCTAACTCCTAGCCGTTATGTGTTAGGGAAAATGTGGAGAATATGACTTTAACAGTGGTGCTGGTGTTGCTAGTACGAGTGGTGGTGCTGGTGTTACCAGTTCAAGTAAGCAGAGTGTTAAAAATAAGGGAATCAATCCTGCTGTAGAAAATTCCTTTAAAGGAGAAGATGGAGATGATTTACTGGACCTTGAAGAAAATGTGACAAATTCAATAAAGACTACGCCAGTTAGACATTCTGAAAGATCTGCCGGAAAAGTATTCAAGTATTACCCTTTGCATATACTGCTATTATGTAATTATTATCTTATTATCAAAAAGGCAGAAAAAAATAGGGTTTCTTGTCAAATAATATTTTGCATCAAATGTCTTATTTCATCGGCAATCTCCATACTACGATTGGTTGAAGATTTTACTGCATGACCATAATTATAGACACATATTTGATACTTGATTTATGATCTTAAAAGTTAGAACTTACAAAATCTGTGTTTTTCTAAGAGTTCACATGTGTTTAGCTTGTATTGGGTCTTCGTAGGTGGCCTTTGTTTCAAAGAGAGCATTCTGTGAGTTTGTGGTGTTTACTGTTTTCTGAGAGGTTAGGTTGGGAAGGAATCGTCTTCAACAAATGGAGAACTCTTGAAAGGAAGTGTGGGATCTTATTATTTCGTAGCCACCTAGAAGGCTTCTGATGTGTCCTTAAGTTGAGATTGAGCTTGGAAATTAAGAAACTAGCGATTGAAACGAATTACCATATCAAAGGAAAGTACAAAAGGTTTACCAAGCATTTGAGAGGCTTACATTTCTCTCGATACTATTTCCAGAATATGTCTATCCCCCACTTCTCCCAATCTATATTATTTATAAACACTATTCCCTAAAAAAAGCTCATTAACCAATTATTAACATACAATTACTAATTTTCCTAACAGCTTCTTTGTTTAAATATTTTTCCAATTATTTATTTTCTACGATCTTAGGTAATCGGGAAGCCTTTTTGTAACTTTTACTTTCAGGAGGCTTTTGCTTTGGGTTGTGAATTTAGTTTATGAATGAAATTAGTTTCCGTAAAAAGAAATGTCCTCTTAAGTTCTTCACATTCTTGGAGAAAGTGCCACCAGTTTGTACCATTACGGTATTGTTATATCTGTATTACGGTCTTCTATTATTCCTAAACATAGTAGGATCAATTTACCGTATGGAAATTGGCGGAAGCAAAGTAGATGTTGGGAAGGCTATCAGTAGAAATACCATCTAGATTGACGGCATTGCCCATCTCAAGTAATGACAATAGACTGTAAGTAGCGATATTTTGAATTAATGAAACCAGCACCGCATTAGTCCTGGATGTTTCTCTAGTACAACTACCTTAAGCCCATCCAAAATTCCAGATTCTTTCACTTGATCAGCTTGGCCGTGCTAGTTGCTATACAGCACATTGGTTTGTATTTATAATCCTAATAAGGCTGTACAAATATGAAACAACCAACGTAACGTTGAGTCCATCTTTTGTCATGTTGGTAGACAAATAGTCTTTCAACAATTTCAGATCAAATGTGAGTTAATTGCAACTTCTTTATTCTCATATATTACTATTCACGTTGAGGCTTATTTCAGTTAATGAATGTTTTTTTTTCGTGATCTGTCTAGCAAAATGATTTTATTCTTTAATTTATTTCCTATACTTGTTAAGTTTTGCAGAGGCTTCTTCTGAGGATGAGTCTGCTGGCACCTACGATGATTTGTCTGAAGGAGAAGAAAAGAATATTCTCATACACGAACCTTCAATTGGAGATCATGCTAGTGAAAATATCCTGTTTATGATTCTTGAATAGTTTGTTTTAATTCATTCTCTGCAGCTTTCTATTATTGTTGATTCAGTCTTTAAATTTATCTGCGGCTGTATGCTCGCTCCCTTAATTGATTGCTACAGACAGAAGATCTCTCTGTTGAGTCTATAGATGAAGATGCTGTGGAAATTAGACCTCCTGTTCTTGAAGGAAATCAGACATCAATTTCTAAGGGGGAAAAAAGTTCTCGGGCTACAGGAAATGCTCAGAGTGATGCTCGTGGACTTGTCCAGCCTACTCTACTTAGTTTGTTCAAGAAAGTGGAGGAGAAGGTAATATCTGAAGACCTTTACTTAATATGTAGAATCAGGTTGCTGGTATGGAATCCATGTACTGCTACATTTGTGGGTTTATTAAAACTACTAATTATTTTTCTTGATGCTAAATGAAAAGGAAAGGATCATTAAAGCCCAATGAAAGTACAAGCAAGAGCTGTTAGAACCTAGCTATCGAGGAACCAAAACAAAAATACTCCCCCTCAAACTATAAAACACTTGGTGAAGCAATGGAAAGGCATTTACCTTTCCCTTGGTTGTTAACAATGATAATAATGTTTTAAAAAGTCAGCACAAAAGTGATCGTAATTCCAGAGCAAAGTATTAAAATGTGTTAGTTACTTACCTCTAAACCCTCTGTAGTCTTATCCTTAAATCCTCCTATTACATTCCAAAAATGAACTGCTTCATGCCAAAGAATCCTCCCTCTCCCCATGACTGGAAGATTACTAAGCATTTCCTCCATACTGCTCCAATTAAGGAATGGTCATCTATCGTTGGAAGCAGAAGAAGGCCTCCTTCCCAGAGAACTGAGCGAAGATATGAGCCTTGTGCATTACAGCTTTAAAGATTATGAAAATTTTAATAAATGACGTGATGGATTCCTTACCTGATAAATTTTTCAGTGGAGGACAGATTATGAGATAACATTCTTTTAGAGCACACAATAAGCATAAAACAAGAAACTCTTAAAAAGAAAAGACCATCCAAGATTTTCCGAAAACATGATTGTTTCTTTCCATCCAAATGACCAACAAAGTACTGAAACTGCAAATTCCAGAAAGCTCTCGATCTCGTGCTAGTAACTCCTCCAAAATTGTCTTATCCGAGTAATGAACTTTATATTTTTAAGGCCTACATATATTTGAAATGAATGCTTACTGTTTTCAGAGGACACCAAGAAGTTCAAAGAGGTCTTCAACACCCAAAGGTTCTAATATTTTTCATTGATTTTATCACGATGGTCACGAGAATACTACAGTAACATCAAATCTGCAAAATTGCTTTCCTACAGTTTCTGCCCAAAAGATGCAGCTGTCTGGTTCAAAGCGAAAGATTGACCAGGTGACAGATCTTCATTTTTAAATAGCACCTTTTCTCCTCGTAATGACTGTAATGGATTGTCATGTATTTTCAGGATGAAGGATCAAAAAAGAGGAGGGCTGTCCGGGGACAAGATGATGGTCAATCTTTCATGCTCTCTCCATTTACTACTGCTAGTTATTTCTCTAACAGGCTTAGATATGACAATATTGGCTTACTAAGAATTTGTCACCTCTCTTTTACGTTGGGTTATCATGGAAATTCTAATAGGATTGCTCAAGAAATTCTATTAGATCTACTACAACTCTTGTAGTAGATCTAATAGAATATTGATTCTCATTTCCACAAGATAGATGTGCATTTTATTTGGACTAATTTTCTGTGCTCTATATTTGTAGTCAGTTTATGCCAATTTGAGTTCTGGAATTACCTAGTGTGTAGCTTTATAGTCGCCTTCAGTCGACTGTGTTTATATGGTATGTTTACATGGTCGGTTGATGCATATTAGCTTGAATTTGCAGGAGAAGTCCAGAAGAAGGATACAGAATATGAGGTACTTGTGCATTTTTACAAATTGTCCTTTCAATAGATTTGTTGCTTTATTAGCTTCAGAATTTCTTATGTGCACTAATCCAACTTGGAGTGTACATGCTTCCCTAAGTTATTATCTAACCGGACAAGTTGCCATTATAACTGCAATAACCAGAAGTATCTTAATAGCAATCAGCAGAGGGCATGTTTGGAATAACAAGGGCTTAAAAATGTGTTTTTGAACACTTGAAAGTCATTCCAAAAGACTCTTAGCTCCTGGTGAAAAGGTTTCATCACAAATAATTCTTTTTGCTTCTCAAGTATCAAAATTTTACGTTTTTTTTCTTTTAATTAAGATTTTATTATTTATTTTTATCAATGAAATCTTACGTGTTAACACACGAGGTTTCTAAAATGATCAGCGTTAGTTTTTGCTTGGGGATACTAACAAAAAGCCTTAATTAATTTTATGTTGTTAATTATAAAAGGGCACCTGGCATCCTTCAAACAACTTCAACCAGCCATTCCTTTTCATGTCTTATTGCCTTATCATGTTACAAGTGAGGGTTTTTAGAATTTAGTTTAAAATGTTATTGGTTTCTGTATTTTGGGTCTCATCCAAATTTAGTACTTGTACTTTCAAATGAAATTCCAAATTTAGTAGTTATGTACCCTCAAATGTTTTAATAAATATTAAAATTAGTTATTATTGTTAGTTTGAAGTTGATTTGTATTGAAATTGGCTATATAATAATAATGATAATAATATCTTTGCAAGGAAGGAGACCATAGTATCTTTGCAAAGAAGGAGGCCATGTGAATATGTTTCCAAAATTTATAGAGGAAAGACTAATAACTAACAGTAGGACTAATTTTAAGATTTATTAGACATTTCTTAGTAGGAAGATTAAAATGGAATTGGACCTGAAATACAAGATCAAATAGTATTATAACCTAAAATTTAATATGTTCTGAACTTGCAACTCCATGTAGTCTATTTCCATTTACTACTCACAAATCACGATGGATTGCTGAATGAAATGGTTGACGGTACATGTCATTGTATGTTAAGTACGTTTTATCTATATCTTGTAGGTTGAAGATGAGATTGAAGAATCGTCAAGTTCTCAAGAGGTGAGTGTTCACTGCCTATTTTATAAACCTAAATACTCCCATGATCTTTTAGAATATTGGACTGGAAGTTAGTGGGCCCTAGGTTTGTACTCATTTTGGAGTCTGATGGAAATATTTGTCTGAACTACTCTTTTGATGTTACGTATAGTTAATTTCTCGCTTGGCTTAGTCCCTACCCTTTATAAACTTCTCACGTCGTGCGTGCCTCACACCATGTTTGTAGGAGAGTTGTCATTTGTATACCGTAATTATTTATTTCATGTAAAGTTAAGAACAAAACAGGTTCTCCATTTGCCTAATTGTAGTTCTTGATCATGATCACCAAAAAGCGTTCACATTGTCATAAACTTTTCACATGCAGGTGATTGAATTAAAATGTTTGAATAATACAGCAATTAAACTTTAAGTGGGAGTGAAAAGATGAAATCAAAGTGAAATGATCATTTAGGGACTAGATGAATAGATTAACTAAAACATATTCCTTTAGTTTCTTTCATAAATATTGGTTAGGAGCTTGCACATTCTTGCTCATGATTTTGTGTCATCTAGGACACTGATGAAGATTGGACAAGTTGAGGTTATTACATTCTACCAATGCTAAGCCACAGCAGCAGCTAGGATCGCATTGCAGGGGCTATATTCAGAATGCTATGCTCTACCAGTTTCTTTGATGCTGCTGCCTAATTGAAATCAAAGAGATTTAACCATAAAATGATATTGAAGTTAAGCTTTTATCCTAAAATTAGGCAATGTAAAATTATGTTTTGATATCAGAGAGATCTACTCTTACACTTCTTAGGGACCAGCCCAGATTTTCAGCTTGAAGGTAAAAATTATTCACAAGATTTTATGCAGCCTATAAACCATGGAGTGTCCATGCCTTTGGATAATATGGTCCAATTAGTTACTATTGTTTCTAGACAATATGGTAACTAATCTAAGTAT

mRNA sequence

AAAAGAGTCAAGGATCCCCAAGAGTGAACGGCAGTCCGTAGCTGACTATCGGCATCAGAAATGGCGCGAGGATCATCGTCTTCAAAGAGGGACGAAGCAAAAGGAGAAATCGATCCGGAGATTGCAGCACGAAAGCGGCTTAAGAAGCTCGCATTCTCCAATCACATACTTTCAGAGACCCAGGCAAAGCCTCAGGCGTATCTGAGCCCTTCAGCGACGGTTCTGAAGCACCATGGCAAAGACATTGTCAAGAAATCTCAGCGAAAGAACAGGTTCCTCTTCTCCTTTTCAGGCTTGCTCGCTCCCGTCAGTGGAGGCAAGATTGGCGAGCTCAAAGATTTGGGAACCAAGAATCCTATTCTCTATCTCGATTTTCCTCAGGGGCGTATGAAGTTGTTTGGAACTATTATGTATCCGAAGAACAAATATTTGACTCTGCAGTTCTCTAGAGGTGGAAAGAATGTGATGTGTGAAGATTATTTTGATAATATGATTGTCTTTTCTGATGCATGGTGGATTGGAACTAAAGATGAAAATCCAGAGGAGGCTTGCCTTGATTTTCCTAAAGAATTGACTACGGGAAAATGTGGAGAATATGACTTTAACAGTGGTGCTGGTGTTGCTAGTACGAGTGGTGGTGCTGGTGTTACCAGTTCAAGTAAGCAGAGTGTTAAAAATAAGGGAATCAATCCTGCTGTAGAAAATTCCTTTAAAGGAGAAGATGGAGATGATTTACTGGACCTTGAAGAAAATGTGACAAATTCAATAAAGACTACGCCAGTTAGACATTCTGAAAGATCTGCCGGAAAAGTGGCCTTTGTTTCAAAGAGAGCATTCTAGGCTTCTTCTGAGGATGAGTCTGCTGGCACCTACGATGATTTGTCTGAAGGAGAAGAAAAGAATATTCTCATACACGAACCTTCAATTGGAGATCATGCTAAAGATCTCTCTGTTGAGTCTATAGATGAAGATGCTGTGGAAATTAGACCTCCTGTTCTTGAAGGAAATCAGACATCAATTTCTAAGGGGGAAAAAAGTTCTCGGGCTACAGGAAATGCTCAGAGTGATGCTCGTGGACTTGTCCAGCCTACTCTACTTAGTTTGTTCAAGAAAGTGGAGGAGAAGAGGACACCAAGAAGTTCAAAGAGGTCTTCAACACCCAAAGTTTCTGCCCAAAAGATGCAGCTGTCTGGTTCAAAGCGAAAGATTGACCAGGATGAAGGATCAAAAAAGAGGAGGGCTGTCCGGGGACAAGATGATGGAGAAGTCCAGAAGAAGGATACAGAATATGAGGTTGAAGATGAGATTGAAGAATCGTCAAGTTCTCAAGAGGACACTGATGAAGATTGGACAAGTTGAGGTTATTACATTCTACCAATGCTAAGCCACAGCAGCAGCTAGGATCGCATTGCAGGGGCTATATTCAGAATGCTATGCTCTACCAGTTTCTTTGATGCTGCTGCCTAATTGAAATCAAAGAGATTTAACCATAAAATGATATTGAAGTTAAGCTTTTATCCTAAAATTAGGCAATGTAAAATTATGTTTTGATATCAGAGAGATCTACTCTTACACTTCTTAGGGACCAGCCCAGATTTTCAGCTTGAAGGTAAAAATTATTCACAAGATTTTATGCAGCCTATAAACCATGGAGTGTCCATGCCTTTGGATAATATGGTCCAATTAGTTACTATTGTTTCTAGACAATATGGTAACTAATCTAAGTAT

Coding sequence (CDS)

ATGGCGCGAGGATCATCGTCTTCAAAGAGGGACGAAGCAAAAGGAGAAATCGATCCGGAGATTGCAGCACGAAAGCGGCTTAAGAAGCTCGCATTCTCCAATCACATACTTTCAGAGACCCAGGCAAAGCCTCAGGCGTATCTGAGCCCTTCAGCGACGGTTCTGAAGCACCATGGCAAAGACATTGTCAAGAAATCTCAGCGAAAGAACAGGTTCCTCTTCTCCTTTTCAGGCTTGCTCGCTCCCGTCAGTGGAGGCAAGATTGGCGAGCTCAAAGATTTGGGAACCAAGAATCCTATTCTCTATCTCGATTTTCCTCAGGGGCGTATGAAGTTGTTTGGAACTATTATGTATCCGAAGAACAAATATTTGACTCTGCAGTTCTCTAGAGGTGGAAAGAATGTGATGTGTGAAGATTATTTTGATAATATGATTGTCTTTTCTGATGCATGGTGGATTGGAACTAAAGATGAAAATCCAGAGGAGGCTTGCCTTGATTTTCCTAAAGAATTGACTACGGGAAAATGTGGAGAATATGACTTTAACAGTGGTGCTGGTGTTGCTAGTACGAGTGGTGGTGCTGGTGTTACCAGTTCAAGTAAGCAGAGTGTTAAAAATAAGGGAATCAATCCTGCTGTAGAAAATTCCTTTAAAGGAGAAGATGGAGATGATTTACTGGACCTTGAAGAAAATGTGACAAATTCAATAAAGACTACGCCAGTTAGACATTCTGAAAGATCTGCCGGAAAAGTGGCCTTTGTTTCAAAGAGAGCATTCTAG

Protein sequence

MARGSSSSKRDEAKGEIDPEIAARKRLKKLAFSNHILSETQAKPQAYLSPSATVLKHHGKDIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRMKLFGTIMYPKNKYLTLQFSRGGKNVMCEDYFDNMIVFSDAWWIGTKDENPEEACLDFPKELTTGKCGEYDFNSGAGVASTSGGAGVTSSSKQSVKNKGINPAVENSFKGEDGDDLLDLEENVTNSIKTTPVRHSERSAGKVAFVSKRAF

Homology

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BLAST of ClCG01G014820 vs. Swiss-Prot
Match: RHL1_ARATH (DNA-binding protein RHL1 OS=Arabidopsis thaliana GN=RHL1 PE=1 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.1e-72
Identity = 146/257 (56.81%), Postives = 179/257 (69.65%), Query Frame = 1


Query: 5   SSSSKRDEAKG--EIDPEIAARKRLKKLAFSNHILSETQAKPQAYLSPSATVLKHHGKDI 64
           +SSSK+  +KG  + D E   RKRLK LA  N +LS++ AK  + L PS  VLKHHG DI
Sbjct: 4   ASSSKKGGSKGGDKDDAESKQRKRLKTLALDNQLLSDSPAKSHSSLKPSKQVLKHHGTDI 63

Query: 65  VKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRMKLFGTIMYPKNK 124
           ++KSQRKNRFLFSF GLLAP+S   IG+L  L TKNP+LYL+FPQGRMKLFGTI+YPKN+
Sbjct: 64  IRKSQRKNRFLFSFPGLLAPISAATIGDLDRLSTKNPVLYLNFPQGRMKLFGTILYPKNR 123

Query: 125 YLTLQFSRGGKNVMCEDYFDNMIVFSDAWWIGTKDENPEEACLDFPKELTTGKCGEYDFN 184
           YLTLQFSRGGKNV+C+DYFDNMIVFS++WWIGTK+ENPEEA LDFPKEL   +  E+DF 
Sbjct: 124 YLTLQFSRGGKNVLCDDYFDNMIVFSESWWIGTKEENPEEARLDFPKELAQAENTEFDFQ 183

Query: 185 SGAG-------VASTSGGAGVTSSSKQSVKNKGINPAVENSFKGEDGDDLLDLEENV--T 244
            GAG       +AS   G+  T +    V N+ +      S  GE  DD + +   V  T
Sbjct: 184 GGAGGAASVKKLASPEIGSQPTETDSPEVDNEDV-----LSEDGEFLDDKIQVTPPVQLT 243

Query: 245 NSIKTTPVRHSERSAGK 251
             ++ TPVR S+R++GK
Sbjct: 244 PPVQVTPVRQSQRNSGK 255

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BLAST of ClCG01G014820 vs. TrEMBL
Match: A0A0A0LVZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043140 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 1.5e-124
Identity = 226/251 (90.04%), Postives = 236/251 (94.02%), Query Frame = 1


Query: 1   MARGSSSSKRDEAKGEIDPEIAARKRLKKLAFSNHILSETQAKPQAYLSPSATVLKHHGK 60
           MARGSSS K+DEAKGEI+PEIA RKRLKKLAFSNHILSETQA+PQAYLSPSATVLKHHGK
Sbjct: 1   MARGSSS-KKDEAKGEINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRMKLFGTIMYPK 120
           DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDL TKNPILYLDFPQGRMKLFGTIMYPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYPK 120

Query: 121 NKYLTLQFSRGGKNVMCEDYFDNMIVFSDAWWIGTKDENPEEACLDFPKELTTGKCGEYD 180
           N+YLTLQFSRGGKNV CED FDNMIVFSDAWWIGTKDENPEEACLDFPK+LT G+CGEYD
Sbjct: 121 NRYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCGEYD 180

Query: 181 FNSGAGVASTSGGAGVTSSSKQSVKNKGINPAVENSFKGEDGDDLLDLEENVTNSIKTTP 240
           FN GAGV STSG AGVTS+SKQSV+ KGINPA ENSFKGE GDDL+ LE +VTNSIKTTP
Sbjct: 181 FNGGAGVTSTSGVAGVTSTSKQSVQRKGINPAAENSFKGEHGDDLVGLEASVTNSIKTTP 240

Query: 241 VRHSERSAGKV 252
           VRHSERSA KV
Sbjct: 241 VRHSERSARKV 250

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BLAST of ClCG01G014820 vs. TrEMBL
Match: F6I6C9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g00750 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.9e-84
Identity = 162/245 (66.12%), Postives = 193/245 (78.78%), Query Frame = 1


Query: 8   SKRDEAKG--EIDPEIAARKRLKKLAFSNHILSETQAKPQAYLSPSATVLKHHGKDIVKK 67
           SK++E  G  E++PE   RKR KKLAFS ++LS+T +K  + LSPS TV+KHHGKDI+KK
Sbjct: 5   SKKNENGGVSELNPEAEERKRRKKLAFSKNLLSDTPSKAFSALSPSKTVIKHHGKDILKK 64

Query: 68  SQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRMKLFGTIMYPKNKYLT 127
           SQRKNRFLFSF GLLAP++GGKIGELKDLGTKNPILYLDFPQG+MKLFGTI+YPKN+YLT
Sbjct: 65  SQRKNRFLFSFPGLLAPIAGGKIGELKDLGTKNPILYLDFPQGQMKLFGTIVYPKNRYLT 124

Query: 128 LQFSRGGKNVMCEDYFDNMIVFSDAWWIGTKDENPEEACLDFPKELTTGKCGEYDFNSGA 187
           L FSRGGKNVMCEDYFDNMIVFSDAWWIG K+ENPEEA L+FPKEL+ G+  EYDF  GA
Sbjct: 125 LHFSRGGKNVMCEDYFDNMIVFSDAWWIGRKEENPEEARLEFPKELSEGQSVEYDFKGGA 184

Query: 188 GVASTSGGAGVTSSSKQSVKNKGINPAVENSFKGEDGDDLLDLEENVTNSIKTTPVRHSE 247
           G+AS S   GV     + V+ +   P +E+   GE  D L D+ E     ++ TPVRHS+
Sbjct: 185 GMASDS-KQGVNKPEMKYVEPQSPKPELEDDLSGE--DSLKDVVEMTPKDVEVTPVRHSQ 244

Query: 248 RSAGK 251
           R+AGK
Sbjct: 245 RTAGK 246

[Close]

BLAST of ClCG01G014820 vs. TrEMBL
Match: A0A061EYH8_THECC (Root hair initiation protein root hairless 1, putative isoform 3 OS=Theobroma cacao GN=TCM_025225 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.5e-81
Identity = 163/252 (64.68%), Postives = 186/252 (73.81%), Query Frame = 1


Query: 1   MARGSSSSKRDEAKGEIDPEIAARKRLKKLAFSNHILSETQAKPQAY--LSPSATVLKHH 60
           M R SSS K   A+    PE   RKRLKKLA  N++LS+T A P++Y  LSPS  V+KHH
Sbjct: 1   MVRTSSSKKPPIAE---TPEATERKRLKKLALKNNLLSDTPATPKSYVPLSPSKLVMKHH 60

Query: 61  GKDIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRMKLFGTIMY 120
           GKDI++KSQRKNRFLFSF GLLAP+SGGKIGELK+LG+KNPILYLDFPQG+MKLFGTI+Y
Sbjct: 61  GKDILRKSQRKNRFLFSFPGLLAPISGGKIGELKNLGSKNPILYLDFPQGQMKLFGTIVY 120

Query: 121 PKNKYLTLQFSRGGKNVMCEDYFDNMIVFSDAWWIGTKDENPEEACLDFPKELTTGKCGE 180
           PKN+YLTL FSRGGKNVMCEDYFDNMIVFSDAWWIG KDENPEEA LDFPKEL  G+  E
Sbjct: 121 PKNRYLTLLFSRGGKNVMCEDYFDNMIVFSDAWWIGKKDENPEEARLDFPKELCQGQQME 180

Query: 181 YDFNSGAGVASTSGGAGVTSSSKQSVKNKGINPAVENSFKGEDGDDLLDLEENVTNSIKT 240
           YDF          GGAGV S +KQ      I      S   E GD L D + ++T  ++ 
Sbjct: 181 YDF---------KGGAGVESVNKQDTPRTEIKQVEIESLDNESGDALSDDDNDLTAKMEV 240

Query: 241 TPVRHSERSAGK 251
           TP RHS R+AGK
Sbjct: 241 TPTRHSARNAGK 240

[Close]

BLAST of ClCG01G014820 vs. TrEMBL
Match: A0A061EZJ8_THECC (Root hair initiation protein root hairless 1, putative isoform 4 OS=Theobroma cacao GN=TCM_025225 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.5e-81
Identity = 163/252 (64.68%), Postives = 186/252 (73.81%), Query Frame = 1


Query: 1   MARGSSSSKRDEAKGEIDPEIAARKRLKKLAFSNHILSETQAKPQAY--LSPSATVLKHH 60
           M R SSS K   A+    PE   RKRLKKLA  N++LS+T A P++Y  LSPS  V+KHH
Sbjct: 1   MVRTSSSKKPPIAE---TPEATERKRLKKLALKNNLLSDTPATPKSYVPLSPSKLVMKHH 60

Query: 61  GKDIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRMKLFGTIMY 120
           GKDI++KSQRKNRFLFSF GLLAP+SGGKIGELK+LG+KNPILYLDFPQG+MKLFGTI+Y
Sbjct: 61  GKDILRKSQRKNRFLFSFPGLLAPISGGKIGELKNLGSKNPILYLDFPQGQMKLFGTIVY 120

Query: 121 PKNKYLTLQFSRGGKNVMCEDYFDNMIVFSDAWWIGTKDENPEEACLDFPKELTTGKCGE 180
           PKN+YLTL FSRGGKNVMCEDYFDNMIVFSDAWWIG KDENPEEA LDFPKEL  G+  E
Sbjct: 121 PKNRYLTLLFSRGGKNVMCEDYFDNMIVFSDAWWIGKKDENPEEARLDFPKELCQGQQME 180

Query: 181 YDFNSGAGVASTSGGAGVTSSSKQSVKNKGINPAVENSFKGEDGDDLLDLEENVTNSIKT 240
           YDF          GGAGV S +KQ      I      S   E GD L D + ++T  ++ 
Sbjct: 181 YDF---------KGGAGVESVNKQDTPRTEIKQVEIESLDNESGDALSDDDNDLTAKMEV 240

Query: 241 TPVRHSERSAGK 251
           TP RHS R+AGK
Sbjct: 241 TPTRHSARNAGK 240

[Close]

BLAST of ClCG01G014820 vs. TrEMBL
Match: A0A061EXP0_THECC (Root hair initiation protein root hairless 1, putative isoform 2 OS=Theobroma cacao GN=TCM_025225 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.5e-81
Identity = 163/252 (64.68%), Postives = 186/252 (73.81%), Query Frame = 1


Query: 1   MARGSSSSKRDEAKGEIDPEIAARKRLKKLAFSNHILSETQAKPQAY--LSPSATVLKHH 60
           M R SSS K   A+    PE   RKRLKKLA  N++LS+T A P++Y  LSPS  V+KHH
Sbjct: 1   MVRTSSSKKPPIAE---TPEATERKRLKKLALKNNLLSDTPATPKSYVPLSPSKLVMKHH 60

Query: 61  GKDIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRMKLFGTIMY 120
           GKDI++KSQRKNRFLFSF GLLAP+SGGKIGELK+LG+KNPILYLDFPQG+MKLFGTI+Y
Sbjct: 61  GKDILRKSQRKNRFLFSFPGLLAPISGGKIGELKNLGSKNPILYLDFPQGQMKLFGTIVY 120

Query: 121 PKNKYLTLQFSRGGKNVMCEDYFDNMIVFSDAWWIGTKDENPEEACLDFPKELTTGKCGE 180
           PKN+YLTL FSRGGKNVMCEDYFDNMIVFSDAWWIG KDENPEEA LDFPKEL  G+  E
Sbjct: 121 PKNRYLTLLFSRGGKNVMCEDYFDNMIVFSDAWWIGKKDENPEEARLDFPKELCQGQQME 180

Query: 181 YDFNSGAGVASTSGGAGVTSSSKQSVKNKGINPAVENSFKGEDGDDLLDLEENVTNSIKT 240
           YDF          GGAGV S +KQ      I      S   E GD L D + ++T  ++ 
Sbjct: 181 YDF---------KGGAGVESVNKQDTPRTEIKQVEIESLDNESGDALSDDDNDLTAKMEV 240

Query: 241 TPVRHSERSAGK 251
           TP RHS R+AGK
Sbjct: 241 TPTRHSARNAGK 240

[Close]

BLAST of ClCG01G014820 vs. TAIR10
Match: AT1G48380.2 (AT1G48380.2 root hair initiation protein root hairless 1 (RHL1))

HSP 1 Score: 258.5 bits (659), Expect = 4.5e-69
Identity = 146/288 (50.69%), Postives = 179/288 (62.15%), Query Frame = 1


Query: 5   SSSSKRDEAKG--EIDPEIAARKRLKKLAFSNHILSETQAKPQAYLSPSATVLKHHGKDI 64
           +SSSK+  +KG  + D E   RKRLK LA  N +LS++ AK  + L PS  VLKHHG DI
Sbjct: 4   ASSSKKGGSKGGDKDDAESKQRKRLKTLALDNQLLSDSPAKSHSSLKPSKQVLKHHGTDI 63

Query: 65  VKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRMKLFGTIMYPKNK 124
           ++KSQRKNRFLFSF GLLAP+S   IG+L  L TKNP+LYL+FPQGRMKLFGTI+YPKN+
Sbjct: 64  IRKSQRKNRFLFSFPGLLAPISAATIGDLDRLSTKNPVLYLNFPQGRMKLFGTILYPKNR 123

Query: 125 YLTLQFSRGGKNVMCEDYFDNMIVFSDAWWIGTKDENPEEACLDFPKELT---------- 184
           YLTLQFSRGGKNV+C+DYFDNMIVFS++WWIGTK+ENPEEA LDFPKEL           
Sbjct: 124 YLTLQFSRGGKNVLCDDYFDNMIVFSESWWIGTKEENPEEARLDFPKELAQVDTFHLFLH 183

Query: 185 ---------------------TGKCGEYDFNSGAG-------VASTSGGAGVTSSSKQSV 244
                                  +  E+DF  GAG       +AS   G+  T +    V
Sbjct: 184 FLFKTMVATEMFNMIRRILWFQAENTEFDFQGGAGGAASVKKLASPEIGSQPTETDSPEV 243

Query: 245 KNKGINPAVENSFKGEDGDDLLDLEENV--TNSIKTTPVRHSERSAGK 251
            N+ +      S  GE  DD + +   V  T  ++ TPVR S+R++GK
Sbjct: 244 DNEDV-----LSEDGEFLDDKIQVTPPVQLTPPVQVTPVRQSQRNSGK 286

[Close]

BLAST of ClCG01G014820 vs. NCBI nr
Match: gi|449439513|ref|XP_004137530.1| (PREDICTED: DNA-binding protein RHL1 [Cucumis sativus])

HSP 1 Score: 453.8 bits (1166), Expect = 2.1e-124
Identity = 226/251 (90.04%), Postives = 236/251 (94.02%), Query Frame = 1


Query: 1   MARGSSSSKRDEAKGEIDPEIAARKRLKKLAFSNHILSETQAKPQAYLSPSATVLKHHGK 60
           MARGSSS K+DEAKGEI+PEIA RKRLKKLAFSNHILSETQA+PQAYLSPSATVLKHHGK
Sbjct: 1   MARGSSS-KKDEAKGEINPEIAERKRLKKLAFSNHILSETQARPQAYLSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRMKLFGTIMYPK 120
           DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDL TKNPILYLDFPQGRMKLFGTIMYPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLSTKNPILYLDFPQGRMKLFGTIMYPK 120

Query: 121 NKYLTLQFSRGGKNVMCEDYFDNMIVFSDAWWIGTKDENPEEACLDFPKELTTGKCGEYD 180
           N+YLTLQFSRGGKNV CED FDNMIVFSDAWWIGTKDENPEEACLDFPK+LT G+CGEYD
Sbjct: 121 NRYLTLQFSRGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKDLTMGQCGEYD 180

Query: 181 FNSGAGVASTSGGAGVTSSSKQSVKNKGINPAVENSFKGEDGDDLLDLEENVTNSIKTTP 240
           FN GAGV STSG AGVTS+SKQSV+ KGINPA ENSFKGE GDDL+ LE +VTNSIKTTP
Sbjct: 181 FNGGAGVTSTSGVAGVTSTSKQSVQRKGINPAAENSFKGEHGDDLVGLEASVTNSIKTTP 240

Query: 241 VRHSERSAGKV 252
           VRHSERSA KV
Sbjct: 241 VRHSERSARKV 250

[Close]

BLAST of ClCG01G014820 vs. NCBI nr
Match: gi|659066963|ref|XP_008467323.1| (PREDICTED: DNA-binding protein RHL1 [Cucumis melo])

HSP 1 Score: 436.8 bits (1122), Expect = 2.6e-119
Identity = 217/251 (86.45%), Postives = 229/251 (91.24%), Query Frame = 1


Query: 1   MARGSSSSKRDEAKGEIDPEIAARKRLKKLAFSNHILSETQAKPQAYLSPSATVLKHHGK 60
           MARGSSSSK+DEAKGEI+PEI  RKRLKKLAFSN+ILSETQAKPQAYLSPSATVLKHHGK
Sbjct: 1   MARGSSSSKKDEAKGEINPEIGERKRLKKLAFSNNILSETQAKPQAYLSPSATVLKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRMKLFGTIMYPK 120
           DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDL TKNP+LYLDFPQGRMKLFGTIMYPK
Sbjct: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLATKNPVLYLDFPQGRMKLFGTIMYPK 120

Query: 121 NKYLTLQFSRGGKNVMCEDYFDNMIVFSDAWWIGTKDENPEEACLDFPKELTTGKCGEYD 180
           N+YLTLQFS+GGKNV CED FDNMIVFSDAWWIGTKDENPEEACLDFPKELT G+CGEYD
Sbjct: 121 NRYLTLQFSKGGKNVTCEDCFDNMIVFSDAWWIGTKDENPEEACLDFPKELTLGQCGEYD 180

Query: 181 FNSGAGVASTSGGAGVTSSSKQSVKNKGINPAVENSFKGEDGDDLLDLEENVTNSIKTTP 240
           FN         GGAGVTS+SKQSV+ KGINPA ENSFKGE GDDL+ LE +VTNS+KT P
Sbjct: 181 FN---------GGAGVTSTSKQSVQKKGINPATENSFKGEHGDDLVGLEASVTNSVKTMP 240

Query: 241 VRHSERSAGKV 252
           VRHSERSA KV
Sbjct: 241 VRHSERSARKV 242

[Close]

BLAST of ClCG01G014820 vs. NCBI nr
Match: gi|225454536|ref|XP_002281960.1| (PREDICTED: DNA-binding protein RHL1 [Vitis vinifera])

HSP 1 Score: 320.5 bits (820), Expect = 2.8e-84
Identity = 162/245 (66.12%), Postives = 193/245 (78.78%), Query Frame = 1


Query: 8   SKRDEAKG--EIDPEIAARKRLKKLAFSNHILSETQAKPQAYLSPSATVLKHHGKDIVKK 67
           SK++E  G  E++PE   RKR KKLAFS ++LS+T +K  + LSPS TV+KHHGKDI+KK
Sbjct: 5   SKKNENGGVSELNPEAEERKRRKKLAFSKNLLSDTPSKAFSALSPSKTVIKHHGKDILKK 64

Query: 68  SQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRMKLFGTIMYPKNKYLT 127
           SQRKNRFLFSF GLLAP++GGKIGELKDLGTKNPILYLDFPQG+MKLFGTI+YPKN+YLT
Sbjct: 65  SQRKNRFLFSFPGLLAPIAGGKIGELKDLGTKNPILYLDFPQGQMKLFGTIVYPKNRYLT 124

Query: 128 LQFSRGGKNVMCEDYFDNMIVFSDAWWIGTKDENPEEACLDFPKELTTGKCGEYDFNSGA 187
           L FSRGGKNVMCEDYFDNMIVFSDAWWIG K+ENPEEA L+FPKEL+ G+  EYDF  GA
Sbjct: 125 LHFSRGGKNVMCEDYFDNMIVFSDAWWIGRKEENPEEARLEFPKELSEGQSVEYDFKGGA 184

Query: 188 GVASTSGGAGVTSSSKQSVKNKGINPAVENSFKGEDGDDLLDLEENVTNSIKTTPVRHSE 247
           G+AS S   GV     + V+ +   P +E+   GE  D L D+ E     ++ TPVRHS+
Sbjct: 185 GMASDS-KQGVNKPEMKYVEPQSPKPELEDDLSGE--DSLKDVVEMTPKDVEVTPVRHSQ 244

Query: 248 RSAGK 251
           R+AGK
Sbjct: 245 RTAGK 246

[Close]

BLAST of ClCG01G014820 vs. NCBI nr
Match: gi|645270176|ref|XP_008240338.1| (PREDICTED: DNA-binding protein RHL1 [Prunus mume])

HSP 1 Score: 315.5 bits (807), Expect = 8.9e-83
Identity = 163/250 (65.20%), Postives = 196/250 (78.40%), Query Frame = 1


Query: 1   MARGSSSSKRDEAKGEIDPEIAARKRLKKLAFSNHILSETQAKPQAYLSPSATVLKHHGK 60
           MAR SSS K+ + + + +PE+  RKRLK LAFSN++LSE  AKP A L+PS TV+KHHGK
Sbjct: 1   MARTSSSKKKRKDEEDPNPEVTQRKRLKALAFSNNLLSEVPAKPHAPLTPSNTVVKHHGK 60

Query: 61  DIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRMKLFGTIMYPK 120
           DI+KKSQRKNRFLFSF GLLAP+ GGKIGELKDLGTKNP+LYLDFPQGRMKLFGTI++PK
Sbjct: 61  DILKKSQRKNRFLFSFPGLLAPIGGGKIGELKDLGTKNPVLYLDFPQGRMKLFGTIVFPK 120

Query: 121 NKYLTLQFSRGGKNVMCEDYFDNMIVFSDAWWIGTKDENPEEACLDFPKELTTGKCGEYD 180
           N+YLT+QF RGGK+VMCEDYFDNMIVFSDAWWIGT+ ENP+EA LDFPKELT G+  EYD
Sbjct: 121 NRYLTMQFPRGGKSVMCEDYFDNMIVFSDAWWIGTQAENPKEAQLDFPKELTEGQHAEYD 180

Query: 181 FNSGAGVASTSGGAGVTSSSKQSVKNKGINPAVENSFKGEDGDDLLDLEENVTNSIKTTP 240
           F          GGAG TS++KQS  +K     VE+S   +  D++ D  +   + ++ TP
Sbjct: 181 F---------KGGAGSTSANKQS-DHKNETTYVEHSPNVKVEDNVSD--DGNKDLMRATP 238

Query: 241 VRHSERSAGK 251
           VRHS R+AGK
Sbjct: 241 VRHSARTAGK 238

[Close]

BLAST of ClCG01G014820 vs. NCBI nr
Match: gi|590638291|ref|XP_007029352.1| (Root hair initiation protein root hairless 1, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 310.8 bits (795), Expect = 2.2e-81
Identity = 163/252 (64.68%), Postives = 186/252 (73.81%), Query Frame = 1


Query: 1   MARGSSSSKRDEAKGEIDPEIAARKRLKKLAFSNHILSETQAKPQAY--LSPSATVLKHH 60
           M R SSS K   A+    PE   RKRLKKLA  N++LS+T A P++Y  LSPS  V+KHH
Sbjct: 1   MVRTSSSKKPPIAE---TPEATERKRLKKLALKNNLLSDTPATPKSYVPLSPSKLVMKHH 60

Query: 61  GKDIVKKSQRKNRFLFSFSGLLAPVSGGKIGELKDLGTKNPILYLDFPQGRMKLFGTIMY 120
           GKDI++KSQRKNRFLFSF GLLAP+SGGKIGELK+LG+KNPILYLDFPQG+MKLFGTI+Y
Sbjct: 61  GKDILRKSQRKNRFLFSFPGLLAPISGGKIGELKNLGSKNPILYLDFPQGQMKLFGTIVY 120

Query: 121 PKNKYLTLQFSRGGKNVMCEDYFDNMIVFSDAWWIGTKDENPEEACLDFPKELTTGKCGE 180
           PKN+YLTL FSRGGKNVMCEDYFDNMIVFSDAWWIG KDENPEEA LDFPKEL  G+  E
Sbjct: 121 PKNRYLTLLFSRGGKNVMCEDYFDNMIVFSDAWWIGKKDENPEEARLDFPKELCQGQQME 180

Query: 181 YDFNSGAGVASTSGGAGVTSSSKQSVKNKGINPAVENSFKGEDGDDLLDLEENVTNSIKT 240
           YDF          GGAGV S +KQ      I      S   E GD L D + ++T  ++ 
Sbjct: 181 YDF---------KGGAGVESVNKQDTPRTEIKQVEIESLDNESGDALSDDDNDLTAKMEV 240

Query: 241 TPVRHSERSAGK 251
           TP RHS R+AGK
Sbjct: 241 TPTRHSARNAGK 240

The following BLAST results are available for this feature:

BLAST of ClCG01G014820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RHL1_ARATH	1.1e-72	56.81	DNA-binding protein RHL1 OS=Arabidopsis thaliana GN=RHL1 PE=1 SV=1	[more]

BLAST of ClCG01G014820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVZ6_CUCSA	1.5e-124	90.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043140 PE=4 SV=1	[more]
F6I6C9_VITVI	1.9e-84	66.12	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g00750 PE=4 SV=...	[more]
A0A061EYH8_THECC	1.5e-81	64.68	Root hair initiation protein root hairless 1, putative isoform 3 OS=Theobroma ca...	[more]
A0A061EZJ8_THECC	1.5e-81	64.68	Root hair initiation protein root hairless 1, putative isoform 4 OS=Theobroma ca...	[more]
A0A061EXP0_THECC	1.5e-81	64.68	Root hair initiation protein root hairless 1, putative isoform 2 OS=Theobroma ca...	[more]

BLAST of ClCG01G014820 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48380.2	4.5e-69	50.69	root hair initiation protein root hairless 1 (RHL1)	[more]

BLAST of ClCG01G014820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439513\|ref\|XP_004137530.1\|	2.1e-124	90.04	PREDICTED: DNA-binding protein RHL1 [Cucumis sativus]	[more]
gi\|659066963\|ref\|XP_008467323.1\|	2.6e-119	86.45	PREDICTED: DNA-binding protein RHL1 [Cucumis melo]	[more]
gi\|225454536\|ref\|XP_002281960.1\|	2.8e-84	66.12	PREDICTED: DNA-binding protein RHL1 [Vitis vinifera]	[more]
gi\|645270176\|ref\|XP_008240338.1\|	8.9e-83	65.20	PREDICTED: DNA-binding protein RHL1 [Prunus mume]	[more]
gi\|590638291\|ref\|XP_007029352.1\|	2.2e-81	64.68	Root hair initiation protein root hairless 1, putative isoform 1 [Theobroma caca...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042023	DNA endoreduplication
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G014820.1	ClCG01G014820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35698	FAMILY NOT NAMED	coord: 3..250 score: 6.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G014820	Csa1G043140	Cucumber (Chinese Long) v2	cuwcgB021
ClCG01G014820	MELO3C002168	Melon (DHL92) v3.5.1	mewcgB130
ClCG01G014820	Cla008383	Watermelon (97103) v1	wcgwmB153
ClCG01G014820	Cla97C01G013840	Watermelon (97103) v2	wcgwmbB089
ClCG01G014820	Bhi08G001113	Wax gourd	wcgwgoB239
ClCG01G014820	CSPI01G07540	Wild cucumber (PI 183967)	cpiwcgB024
ClCG01G014820	Cucsa.122270	Cucumber (Gy14) v1	cgywcgB189
ClCG01G014820	CmaCh13G009600	Cucurbita maxima (Rimu)	cmawcgB179
ClCG01G014820	CmaCh18G001000	Cucurbita maxima (Rimu)	cmawcgB346
ClCG01G014820	CmoCh18G000770	Cucurbita moschata (Rifu)	cmowcgB343
ClCG01G014820	CmoCh13G009940	Cucurbita moschata (Rifu)	cmowcgB170
ClCG01G014820	Lsi02G002720	Bottle gourd (USVL1VR-Ls)	lsiwcgB173
ClCG01G014820	Cp4.1LG09g10920	Cucurbita pepo (Zucchini)	cpewcgB021
ClCG01G014820	Cp4.1LG20g01720	Cucurbita pepo (Zucchini)	cpewcgB454
ClCG01G014820	CsGy1G007420	Cucumber (Gy14) v2	cgybwcgB020
ClCG01G014820	MELO3C002168.2	Melon (DHL92) v3.6.1	medwcgB125
ClCG01G014820	Carg06655	Silver-seed gourd	carwcgB0479
ClCG01G014820	Carg04876	Silver-seed gourd	carwcgB0380
ClCG01G014820	CsaV3_1G007510	Cucumber (Chinese Long) v3	cucwcgB023

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None