CsaV3_1G005370 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G005370
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 3531002 .. 3531292 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGCCATATGCTTTGATCACATAGCTTTTCAGGTATATGTTTCTGATGTTGTACAATATTATGTTTAGTTATTATCCAATAGTTTGATTTGCTGTGTTGATCATGGATTTGATACAATCTTGTGGATGCAGTGTTTACTAGATTTCCAACCCAGTTTCTGTGGAGTGAAAGGGAAGGAAAAGACCAATGGGATCCACCATAGCAGTAAGATGGTTGCAGAATTTAATGCTGCCAACCCAACTTGTTCCAGCTTATATTTTTCTCTGTACCACCACTTAATTACCTGA

mRNA sequence

ATGCCTGCCATATGCTTTGATCACATAGCTTTTCAGTGTTTACTAGATTTCCAACCCAGTTTCTGTGGAGTGAAAGGGAAGGAAAAGACCAATGGGATCCACCATAGCAGTAAGATGGTTGCAGAATTTAATGCTGCCAACCCAACTTGTTCCAGCTTATATTTTTCTCTGTACCACCACTTAATTACCTGA

Coding sequence (CDS)

ATGCCTGCCATATGCTTTGATCACATAGCTTTTCAGTGTTTACTAGATTTCCAACCCAGTTTCTGTGGAGTGAAAGGGAAGGAAAAGACCAATGGGATCCACCATAGCAGTAAGATGGTTGCAGAATTTAATGCTGCCAACCCAACTTGTTCCAGCTTATATTTTTCTCTGTACCACCACTTAATTACCTGA

Protein sequence

MPAICFDHIAFQCLLDFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSLYFSLYHHLIT
Homology
[Close]
BLAST of CsaV3_1G005370 vs. NCBI nr
Match: KGN63987.1 (hypothetical protein Csa_1G033070 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 4.2e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MPAICFDHIAFQCLLDFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSLYFSLYHH 60
          MPAICFDHIAFQCLLDFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSLYFSLYHH
Sbjct: 1  MPAICFDHIAFQCLLDFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSLYFSLYHH 60

Query: 61 LIT 64
          LIT
Sbjct: 61 LIT 63

[Close]
BLAST of CsaV3_1G005370 vs. TrEMBL
Match: tr|A0A0A0LTA5|A0A0A0LTA5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033070 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.8e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MPAICFDHIAFQCLLDFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSLYFSLYHH 60
          MPAICFDHIAFQCLLDFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSLYFSLYHH
Sbjct: 1  MPAICFDHIAFQCLLDFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSLYFSLYHH 60

Query: 61 LIT 64
          LIT
Sbjct: 61 LIT 63

The following BLAST results are available for this feature:
BLAST of CsaV3_1G005370 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63987.14.2e-30100.00hypothetical protein Csa_1G033070 [Cucumis sativus][more]
BLAST of CsaV3_1G005370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G005370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G005370 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LTA5|A0A0A0LTA5_CUCSA2.8e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033070 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G005370.1CsaV3_1G005370.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G005370CSPI01G05490Wild cucumber (PI 183967)cpicucB001
CsaV3_1G005370CmaCh13G011250Cucurbita maxima (Rimu)cmacucB0237
CsaV3_1G005370Cp4.1LG20g00400Cucurbita pepo (Zucchini)cpecucB0636
CsaV3_1G005370CsGy1G005250Cucumber (Gy14) v2cgybcucB002
CsaV3_1G005370Lsi02G000650Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G005370Cla97C04G079330Watermelon (97103) v2cucwmbB054
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G005370Cucumber (Gy14) v2cgybcucB004
CsaV3_1G005370Cucumber (Gy14) v2cgybcucB203
CsaV3_1G005370Cucumber (Gy14) v2cgybcucB200
CsaV3_1G005370Cucumber (Gy14) v1cgycucB143
CsaV3_1G005370Cucumber (Gy14) v1cgycucB241
CsaV3_1G005370Cucumber (Gy14) v1cgycucB315
CsaV3_1G005370Cucumber (Gy14) v1cgycucB434
CsaV3_1G005370Cucurbita maxima (Rimu)cmacucB0063
CsaV3_1G005370Cucurbita maxima (Rimu)cmacucB0119
CsaV3_1G005370Cucurbita maxima (Rimu)cmacucB0324
CsaV3_1G005370Cucurbita maxima (Rimu)cmacucB0479
CsaV3_1G005370Cucurbita maxima (Rimu)cmacucB0513
CsaV3_1G005370Cucurbita maxima (Rimu)cmacucB0815
CsaV3_1G005370Cucurbita maxima (Rimu)cmacucB0816
CsaV3_1G005370Cucurbita moschata (Rifu)cmocucB0049
CsaV3_1G005370Cucurbita moschata (Rifu)cmocucB0092
CsaV3_1G005370Cucurbita moschata (Rifu)cmocucB0224
CsaV3_1G005370Cucurbita moschata (Rifu)cmocucB0320
CsaV3_1G005370Cucurbita moschata (Rifu)cmocucB0466
CsaV3_1G005370Cucurbita moschata (Rifu)cmocucB0501
CsaV3_1G005370Cucurbita moschata (Rifu)cmocucB0799
CsaV3_1G005370Cucurbita moschata (Rifu)cmocucB0800
CsaV3_1G005370Cucurbita pepo (Zucchini)cpecucB0020
CsaV3_1G005370Cucurbita pepo (Zucchini)cpecucB0191
CsaV3_1G005370Cucurbita pepo (Zucchini)cpecucB0448
CsaV3_1G005370Cucurbita pepo (Zucchini)cpecucB0471
CsaV3_1G005370Cucurbita pepo (Zucchini)cpecucB0472
CsaV3_1G005370Cucurbita pepo (Zucchini)cpecucB0665
CsaV3_1G005370Cucurbita pepo (Zucchini)cpecucB0816
CsaV3_1G005370Wild cucumber (PI 183967)cpicucB003
CsaV3_1G005370Wild cucumber (PI 183967)cpicucB253
CsaV3_1G005370Wild cucumber (PI 183967)cpicucB256
CsaV3_1G005370Bottle gourd (USVL1VR-Ls)cuclsiB046
CsaV3_1G005370Bottle gourd (USVL1VR-Ls)cuclsiB059
CsaV3_1G005370Bottle gourd (USVL1VR-Ls)cuclsiB083
CsaV3_1G005370Melon (DHL92) v3.5.1cucmeB001
CsaV3_1G005370Melon (DHL92) v3.5.1cucmeB004
CsaV3_1G005370Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G005370Melon (DHL92) v3.5.1cucmeB056
CsaV3_1G005370Melon (DHL92) v3.6.1cucmedB001
CsaV3_1G005370Melon (DHL92) v3.6.1cucmedB004
CsaV3_1G005370Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G005370Melon (DHL92) v3.6.1cucmedB053
CsaV3_1G005370Watermelon (Charleston Gray)cucwcgB004
CsaV3_1G005370Watermelon (Charleston Gray)cucwcgB063
CsaV3_1G005370Watermelon (Charleston Gray)cucwcgB069
CsaV3_1G005370Watermelon (Charleston Gray)cucwcgB090
CsaV3_1G005370Watermelon (97103) v1cucwmB005
CsaV3_1G005370Watermelon (97103) v1cucwmB043
CsaV3_1G005370Watermelon (97103) v1cucwmB070
CsaV3_1G005370Watermelon (97103) v1cucwmB107
CsaV3_1G005370Watermelon (97103) v2cucwmbB058
CsaV3_1G005370Watermelon (97103) v2cucwmbB078
CsaV3_1G005370Watermelon (97103) v2cucwmbB095
CsaV3_1G005370Wax gourdcucwgoB008
CsaV3_1G005370Wax gourdcucwgoB036
CsaV3_1G005370Wax gourdcucwgoB074
CsaV3_1G005370Wax gourdcucwgoB121
CsaV3_1G005370Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G005370Cucumber (Chinese Long) v3cuccucB034
CsaV3_1G005370Cucumber (Chinese Long) v3cuccucB037
CsaV3_1G005370Silver-seed gourdcarcucB0058
CsaV3_1G005370Silver-seed gourdcarcucB0115
CsaV3_1G005370Silver-seed gourdcarcucB0420
CsaV3_1G005370Silver-seed gourdcarcucB0647
CsaV3_1G005370Silver-seed gourdcarcucB0719