CmaCh13G011250 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh13G011250
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr13 : 8366115 .. 8366524 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGTCTTCGACTGATTGAATTGGACGAACATGAGCAAAAGATGGCTAGAGATGAAGTAAGTTTCAATGTGGGGTGGAGGGAGCTGTTAGATGAATGGTTTGTTGTCCAAACAAGGCAGCAATGGATCAATCTTGTCATGCCTGCCATCTGCTTTGATCACATAGCTTTTCAGATAGATATATGCTTGTAAAGATGAACAGTAATATGTTTTGTTATTATCCAATAATTTGATTTGCTGTAAGGCTTATGGATTTGCCAAAATCCCAACCCAGTTTCTGTGGAGTGCAAGAGAAGGAAAAGACCGATGGGATCCACCATAGCAGTGAGATGGATGCAGAATTTAATGCTGCCAACCCAACTTGTTCCACCTTATATTTTCCTCTGTACCATCACATAATTACCTGA

mRNA sequence

ATGGATGGTCTTCGACTGATTGAATTGGACGAACATGAGCAAAAGATGGCTAGAGATGAAGTAAGTTTCAATGTGGGGTGGAGGGAGCTGTTAGATGAATGGTTTGTTGTCCAAACAAGGCAGCAATGGATCAATCTTGTCATGCCTGCCATCTGCTTTGATCACATAGCTTTTCAGATAGATATATGCTTGCTTATGGATTTGCCAAAATCCCAACCCAGTTTCTGTGGAGTGCAAGAGAAGGAAAAGACCGATGGGATCCACCATAGCAGTGAGATGGATGCAGAATTTAATGCTGCCAACCCAACTTGTTCCACCTTATATTTTCCTCTGTACCATCACATAATTACCTGA

Coding sequence (CDS)

ATGGATGGTCTTCGACTGATTGAATTGGACGAACATGAGCAAAAGATGGCTAGAGATGAAGTAAGTTTCAATGTGGGGTGGAGGGAGCTGTTAGATGAATGGTTTGTTGTCCAAACAAGGCAGCAATGGATCAATCTTGTCATGCCTGCCATCTGCTTTGATCACATAGCTTTTCAGATAGATATATGCTTGCTTATGGATTTGCCAAAATCCCAACCCAGTTTCTGTGGAGTGCAAGAGAAGGAAAAGACCGATGGGATCCACCATAGCAGTGAGATGGATGCAGAATTTAATGCTGCCAACCCAACTTGTTCCACCTTATATTTTCCTCTGTACCATCACATAATTACCTGA

Protein sequence

MDGLRLIELDEHEQKMARDEVSFNVGWRELLDEWFVVQTRQQWINLVMPAICFDHIAFQIDICLLMDLPKSQPSFCGVQEKEKTDGIHHSSEMDAEFNAANPTCSTLYFPLYHHIIT
Homology
[Close]
BLAST of CmaCh13G011250 vs. TrEMBL
Match: A0A0A0LTA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G033070 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1 

Query: 48  MPAICFDHIAFQIDICLLMDLPKSQPSFCGVQEKEKTDGIHHSSEMDAEFNAANPTCSTL 107
           MPAICFDHIAFQ   CLL      QPSFCGV+ KEKT+GIHHSS+M AEFNAANPTCS+L
Sbjct: 1   MPAICFDHIAFQ---CLL----DFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSL 60

Query: 108 YFPLYHHIIT 118
           YF LYHH+IT
Sbjct: 61  YFSLYHHLIT 63

[Close]
BLAST of CmaCh13G011250 vs. NCBI nr
Match: gi|700208891|gb|KGN63987.1| (hypothetical protein Csa_1G033070 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-20
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1 

Query: 48  MPAICFDHIAFQIDICLLMDLPKSQPSFCGVQEKEKTDGIHHSSEMDAEFNAANPTCSTL 107
           MPAICFDHIAFQ   CLL      QPSFCGV+ KEKT+GIHHSS+M AEFNAANPTCS+L
Sbjct: 1   MPAICFDHIAFQ---CLL----DFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSL 60

Query: 108 YFPLYHHIIT 118
           YF LYHH+IT
Sbjct: 61  YFSLYHHLIT 63

The following BLAST results are available for this feature:
BLAST of CmaCh13G011250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh13G011250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTA5_CUCSA1.5e-2075.71Uncharacterized protein OS=Cucumis sativus GN=Csa_1G033070 PE=4 SV=1[more]
BLAST of CmaCh13G011250 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh13G011250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208891|gb|KGN63987.1|2.2e-2075.71hypothetical protein Csa_1G033070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G011250.1CmaCh13G011250.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh13G011250Csa1G033070Cucumber (Chinese Long) v2cmacuB206
CmaCh13G011250CSPI01G05490Wild cucumber (PI 183967)cmacpiB208
CmaCh13G011250Lsi02G000650Bottle gourd (USVL1VR-Ls)cmalsiB203
CmaCh13G011250Cp4.1LG20g00400Cucurbita pepo (Zucchini)cmacpeB234
CmaCh13G011250CsaV3_1G005370Cucumber (Chinese Long) v3cmacucB0237
CmaCh13G011250Cla97C04G079330Watermelon (97103) v2cmawmbB236
CmaCh13G011250CsGy1G005250Cucumber (Gy14) v2cgybcmaB064
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh13G011250Cucurbita pepo (Zucchini)cmacpeB244
CmaCh13G011250Bottle gourd (USVL1VR-Ls)cmalsiB215
CmaCh13G011250Bottle gourd (USVL1VR-Ls)cmalsiB221
CmaCh13G011250Cucumber (Gy14) v2cgybcmaB593
CmaCh13G011250Melon (DHL92) v3.6.1cmamedB208
CmaCh13G011250Melon (DHL92) v3.6.1cmamedB219
CmaCh13G011250Melon (DHL92) v3.6.1cmamedB230
CmaCh13G011250Silver-seed gourdcarcmaB0064
CmaCh13G011250Silver-seed gourdcarcmaB0129
CmaCh13G011250Silver-seed gourdcarcmaB0540
CmaCh13G011250Silver-seed gourdcarcmaB0863
CmaCh13G011250Cucumber (Chinese Long) v3cmacucB0243
CmaCh13G011250Cucumber (Chinese Long) v3cmacucB0261
CmaCh13G011250Watermelon (97103) v2cmawmbB239
CmaCh13G011250Watermelon (97103) v2cmawmbB243
CmaCh13G011250Wax gourdcmawgoB0255
CmaCh13G011250Wax gourdcmawgoB0283
CmaCh13G011250Cucurbita maxima (Rimu)cmacmaB091
CmaCh13G011250Cucurbita maxima (Rimu)cmacmaB129
CmaCh13G011250Cucurbita maxima (Rimu)cmacmaB219
CmaCh13G011250Cucurbita maxima (Rimu)cmacmaB221
CmaCh13G011250Cucurbita maxima (Rimu)cmacmaB237
CmaCh13G011250Cucumber (Gy14) v1cgycmaB0262
CmaCh13G011250Cucumber (Gy14) v1cgycmaB0584
CmaCh13G011250Cucumber (Gy14) v1cgycmaB0793
CmaCh13G011250Cucurbita moschata (Rifu)cmacmoB210
CmaCh13G011250Cucurbita moschata (Rifu)cmacmoB214
CmaCh13G011250Cucurbita moschata (Rifu)cmacmoB218
CmaCh13G011250Cucurbita moschata (Rifu)cmacmoB225
CmaCh13G011250Wild cucumber (PI 183967)cmacpiB228
CmaCh13G011250Cucumber (Chinese Long) v2cmacuB216
CmaCh13G011250Cucumber (Chinese Long) v2cmacuB227
CmaCh13G011250Melon (DHL92) v3.5.1cmameB188
CmaCh13G011250Melon (DHL92) v3.5.1cmameB198
CmaCh13G011250Melon (DHL92) v3.5.1cmameB210
CmaCh13G011250Watermelon (Charleston Gray)cmawcgB211
CmaCh13G011250Watermelon (Charleston Gray)cmawcgB205
CmaCh13G011250Watermelon (Charleston Gray)cmawcgB207
CmaCh13G011250Watermelon (97103) v1cmawmB194
CmaCh13G011250Watermelon (97103) v1cmawmB208
CmaCh13G011250Watermelon (97103) v1cmawmB217