CSPI01G05490 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G05490
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 3529324 .. 3529611 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGCCATATGCTTTGATCACATAGCTTTTCAGGTATATGTTTCTGATGTTGTACAATATTATGTTTAGTTATTATCCAATAGTTTGATTTGCTGTGTTGATCATGGATTTGATACAATCTTGTGGATGCAGTGTTTACTAGATTTCCAACCCAGTTTCTGTGGAGTGAAAGGGAAGGAAAAGACCAATGGGATCCACCGTAGCAGTAAGATGGTTGCAGAATTTAATGCTGCCAACCCAACTTGTTCCAGCTTATATTTTTCTCTGTACCACCACTTAATTACC

mRNA sequence

ATGCCTGCCATATGCTTTGATCACATAGCTTTTCAGTGTTTACTAGATTTCCAACCCAGTTTCTGTGGAGTGAAAGGGAAGGAAAAGACCAATGGGATCCACCGTAGCAGTAAGATGGTTGCAGAATTTAATGCTGCCAACCCAACTTGTTCCAGCTTATATTTTTCTCTGTACCACCACTTAATTACC

Coding sequence (CDS)

ATGCCTGCCATATGCTTTGATCACATAGCTTTTCAGTGTTTACTAGATTTCCAACCCAGTTTCTGTGGAGTGAAAGGGAAGGAAAAGACCAATGGGATCCACCGTAGCAGTAAGATGGTTGCAGAATTTAATGCTGCCAACCCAACTTGTTCCAGCTTATATTTTTCTCTGTACCACCACTTAATTACC
Homology
[Close]
BLAST of CSPI01G05490 vs. TrEMBL
Match: A0A0A0LTA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G033070 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.1e-29
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 1 

Query: 1  MPAICFDHIAFQCLLDFQPSFCGVKGKEKTNGIHRSSKMVAEFNAANPTCSSLYFSLYHH 60
          MPAICFDHIAFQCLLDFQPSFCGVKGKEKTNGIH SSKMVAEFNAANPTCSSLYFSLYHH
Sbjct: 1  MPAICFDHIAFQCLLDFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSLYFSLYHH 60

Query: 61 LIT 64
          LIT
Sbjct: 61 LIT 63

[Close]
BLAST of CSPI01G05490 vs. NCBI nr
Match: gi|700208891|gb|KGN63987.1| (hypothetical protein Csa_1G033070 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 3.1e-29
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 1 

Query: 1  MPAICFDHIAFQCLLDFQPSFCGVKGKEKTNGIHRSSKMVAEFNAANPTCSSLYFSLYHH 60
          MPAICFDHIAFQCLLDFQPSFCGVKGKEKTNGIH SSKMVAEFNAANPTCSSLYFSLYHH
Sbjct: 1  MPAICFDHIAFQCLLDFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSLYFSLYHH 60

Query: 61 LIT 64
          LIT
Sbjct: 61 LIT 63

The following BLAST results are available for this feature:
BLAST of CSPI01G05490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G05490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTA5_CUCSA2.1e-2998.41Uncharacterized protein OS=Cucumis sativus GN=Csa_1G033070 PE=4 SV=1[more]
BLAST of CSPI01G05490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G05490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208891|gb|KGN63987.1|3.1e-2998.41hypothetical protein Csa_1G033070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G05490.1CSPI01G05490.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G05490Csa1G033070Cucumber (Chinese Long) v2cpicuB000
CSPI01G05490Lsi02G000650Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G05490CsaV3_1G005370Cucumber (Chinese Long) v3cpicucB001
CSPI01G05490Cla97C04G079330Watermelon (97103) v2cpiwmbB055
CSPI01G05490CmaCh13G011250Cucurbita maxima (Rimu)cmacpiB208
CSPI01G05490Cp4.1LG20g00400Cucurbita pepo (Zucchini)cpecpiB519
CSPI01G05490CsGy1G005250Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G05490Wax gourdcpiwgoB008
CSPI01G05490Wax gourdcpiwgoB034
CSPI01G05490Wax gourdcpiwgoB070
CSPI01G05490Wax gourdcpiwgoB116
CSPI01G05490Wild cucumber (PI 183967)cpicpiB000
CSPI01G05490Wild cucumber (PI 183967)cpicpiB028
CSPI01G05490Wild cucumber (PI 183967)cpicpiB031
CSPI01G05490Cucumber (Gy14) v1cgycpiB137
CSPI01G05490Cucumber (Gy14) v1cgycpiB233
CSPI01G05490Cucumber (Gy14) v1cgycpiB311
CSPI01G05490Cucumber (Gy14) v1cgycpiB426
CSPI01G05490Cucurbita maxima (Rimu)cmacpiB055
CSPI01G05490Cucurbita maxima (Rimu)cmacpiB104
CSPI01G05490Cucurbita maxima (Rimu)cmacpiB280
CSPI01G05490Cucurbita maxima (Rimu)cmacpiB407
CSPI01G05490Cucurbita maxima (Rimu)cmacpiB431
CSPI01G05490Cucurbita maxima (Rimu)cmacpiB692
CSPI01G05490Cucurbita maxima (Rimu)cmacpiB694
CSPI01G05490Cucurbita moschata (Rifu)cmocpiB046
CSPI01G05490Cucurbita moschata (Rifu)cmocpiB080
CSPI01G05490Cucurbita moschata (Rifu)cmocpiB195
CSPI01G05490Cucurbita moschata (Rifu)cmocpiB270
CSPI01G05490Cucurbita moschata (Rifu)cmocpiB391
CSPI01G05490Cucurbita moschata (Rifu)cmocpiB421
CSPI01G05490Cucurbita moschata (Rifu)cmocpiB685
CSPI01G05490Cucurbita moschata (Rifu)cmocpiB686
CSPI01G05490Cucumber (Chinese Long) v2cpicuB003
CSPI01G05490Cucumber (Chinese Long) v2cpicuB036
CSPI01G05490Cucumber (Chinese Long) v2cpicuB039
CSPI01G05490Melon (DHL92) v3.5.1cpimeB001
CSPI01G05490Melon (DHL92) v3.5.1cpimeB004
CSPI01G05490Melon (DHL92) v3.5.1cpimeB024
CSPI01G05490Melon (DHL92) v3.5.1cpimeB058
CSPI01G05490Watermelon (Charleston Gray)cpiwcgB059
CSPI01G05490Watermelon (Charleston Gray)cpiwcgB065
CSPI01G05490Watermelon (Charleston Gray)cpiwcgB085
CSPI01G05490Watermelon (97103) v1cpiwmB038
CSPI01G05490Watermelon (97103) v1cpiwmB066
CSPI01G05490Watermelon (97103) v1cpiwmB101
CSPI01G05490Cucurbita pepo (Zucchini)cpecpiB018
CSPI01G05490Cucurbita pepo (Zucchini)cpecpiB366
CSPI01G05490Cucurbita pepo (Zucchini)cpecpiB379
CSPI01G05490Cucurbita pepo (Zucchini)cpecpiB380
CSPI01G05490Cucurbita pepo (Zucchini)cpecpiB535
CSPI01G05490Cucurbita pepo (Zucchini)cpecpiB658
CSPI01G05490Bottle gourd (USVL1VR-Ls)cpilsiB043
CSPI01G05490Bottle gourd (USVL1VR-Ls)cpilsiB053
CSPI01G05490Bottle gourd (USVL1VR-Ls)cpilsiB072
CSPI01G05490Melon (DHL92) v3.6.1cpimedB001
CSPI01G05490Melon (DHL92) v3.6.1cpimedB004
CSPI01G05490Melon (DHL92) v3.6.1cpimedB023
CSPI01G05490Melon (DHL92) v3.6.1cpimedB052
CSPI01G05490Cucumber (Gy14) v2cgybcpiB003
CSPI01G05490Cucumber (Gy14) v2cgybcpiB200
CSPI01G05490Cucumber (Gy14) v2cgybcpiB203
CSPI01G05490Silver-seed gourdcarcpiB0056
CSPI01G05490Silver-seed gourdcarcpiB0111
CSPI01G05490Silver-seed gourdcarcpiB0289
CSPI01G05490Silver-seed gourdcarcpiB0421
CSPI01G05490Silver-seed gourdcarcpiB0646
CSPI01G05490Silver-seed gourdcarcpiB0716
CSPI01G05490Cucumber (Chinese Long) v3cpicucB002
CSPI01G05490Cucumber (Chinese Long) v3cpicucB042
CSPI01G05490Cucumber (Chinese Long) v3cpicucB045
CSPI01G05490Watermelon (97103) v2cpiwmbB062
CSPI01G05490Watermelon (97103) v2cpiwmbB081
CSPI01G05490Watermelon (97103) v2cpiwmbB093