CsaV3_1G004850 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G004850
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 3156240 .. 3156845 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAGAAAAGCAAAGGTGCATAAATAAGGCCATGTAGAGCGTCCCACTCCGGTGGAATCGCCGATCAATAACAGATTGTTAAATTTTGATCGAAAATGGGAGGCGAGAGTTGGTAGTAAAAGCAATAGAAGGCGTTGTGTTGGATTGTTCCGTCCAGTATCTCAGGAATCCAAAAGGACTCAAGATATAGTGGAGTTGAATTCATTCGGAGGGCAGCTTAAGGAAATGTCTAAGCAAAATGAAACGTTAAGAGAAACCCTAAAACAAGCGGGATCTGAAGATTTAGTTGTTGGGCAATAATAATAATAGGGGTGTGTGGATTTAAACAAATAGAAAGAGGAAAAAGGAGGGATAAAAAGAAATGGAGATGAAAAGAGAGGAGCACCTGGTGGTTGCTGCTGGTAAAGTGGTAGTGGTGGTGACAGAGGAGGATGAGGGCTGTTTCCGCGGTGTCGCTGCTGCTAATGCTTCCCTTCTTTCTTTTCTTCTTCTTCTTTTTCTCTTTCTCTGGGAGCCCAGCCTGCTGTCTCGAATTGAACTCGTGGACCTAAGGCCAGTTAGATACTTTTCGAGGCATTCATTGTTTTTTTCCCCATTATTTTAA

mRNA sequence

ATGGAGATGAAAAGAGAGGAGCACCTGGTGGTTGCTGCTGGTAAAGTGGTAGTGGTGGTGACAGAGGAGGATGAGGGCTGTTTCCGCGGTGTCGCTGCTGCTAATGCTTCCCTTCTTTCTTTTCTTCTTCTTCTTTTTCTCTTTCTCTGGGAGCCCAGCCTGCTGTCTCGAATTGAACTCGTGGACCTAAGGCCAGTTAGATACTTTTCGAGGCATTCATTGTTTTTTTCCCCATTATTTTAA

Coding sequence (CDS)

ATGGAGATGAAAAGAGAGGAGCACCTGGTGGTTGCTGCTGGTAAAGTGGTAGTGGTGGTGACAGAGGAGGATGAGGGCTGTTTCCGCGGTGTCGCTGCTGCTAATGCTTCCCTTCTTTCTTTTCTTCTTCTTCTTTTTCTCTTTCTCTGGGAGCCCAGCCTGCTGTCTCGAATTGAACTCGTGGACCTAAGGCCAGTTAGATACTTTTCGAGGCATTCATTGTTTTTTTCCCCATTATTTTAA

Protein sequence

MEMKREEHLVVAAGKVVVVVTEEDEGCFRGVAAANASLLSFLLLLFLFLWEPSLLSRIELVDLRPVRYFSRHSLFFSPLF
Homology
[Close]
BLAST of CsaV3_1G004850 vs. NCBI nr
Match: KGN63932.1 (hypothetical protein Csa_1G029590 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 2.5e-24
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MEMKREEHLXXXXXXXXXXXXXXXXGCFRGVAAANASLLSFLLLLFLFLWEPSLLSRIEL 60
          MEMKREEHLXXXXXXXXXXXXXXXXGCFRGVAAANASLLSFLLLLFLFLWEPSLLSRIEL
Sbjct: 1  MEMKREEHLXXXXXXXXXXXXXXXXGCFRGVAAANASLLSFLLLLFLFLWEPSLLSRIEL 60

Query: 61 VDLRPVRYFSRHSLFFSPLF 81
          VDLRPVRYFSRHSLFFSPLF
Sbjct: 61 VDLRPVRYFSRHSLFFSPLF 80

[Close]
BLAST of CsaV3_1G004850 vs. TrEMBL
Match: tr|A0A0A0LT29|A0A0A0LT29_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G029590 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.7e-24
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MEMKREEHLXXXXXXXXXXXXXXXXGCFRGVAAANASLLSFLLLLFLFLWEPSLLSRIEL 60
          MEMKREEHLXXXXXXXXXXXXXXXXGCFRGVAAANASLLSFLLLLFLFLWEPSLLSRIEL
Sbjct: 1  MEMKREEHLXXXXXXXXXXXXXXXXGCFRGVAAANASLLSFLLLLFLFLWEPSLLSRIEL 60

Query: 61 VDLRPVRYFSRHSLFFSPLF 81
          VDLRPVRYFSRHSLFFSPLF
Sbjct: 61 VDLRPVRYFSRHSLFFSPLF 80

The following BLAST results are available for this feature:
BLAST of CsaV3_1G004850 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63932.12.5e-24100.00hypothetical protein Csa_1G029590 [Cucumis sativus][more]
BLAST of CsaV3_1G004850 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G004850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G004850 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LT29|A0A0A0LT29_CUCSA1.7e-24100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G029590 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G004850.1CsaV3_1G004850.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G004850CSPI01G04900Wild cucumber (PI 183967)cpicucB001
CsaV3_1G004850CsGy1G004770Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G004850Silver-seed gourdcarcucB0552
CsaV3_1G004850Silver-seed gourdcarcucB0555
CsaV3_1G004850Cucumber (Gy14) v1cgycucB143
CsaV3_1G004850Cucurbita maxima (Rimu)cmacucB0247
CsaV3_1G004850Cucurbita maxima (Rimu)cmacucB0513
CsaV3_1G004850Cucurbita maxima (Rimu)cmacucB0519
CsaV3_1G004850Cucurbita moschata (Rifu)cmocucB0233
CsaV3_1G004850Cucurbita moschata (Rifu)cmocucB0501
CsaV3_1G004850Cucurbita moschata (Rifu)cmocucB0506
CsaV3_1G004850Cucurbita pepo (Zucchini)cpecucB0660
CsaV3_1G004850Cucurbita pepo (Zucchini)cpecucB0665
CsaV3_1G004850Bottle gourd (USVL1VR-Ls)cuclsiB037
CsaV3_1G004850Melon (DHL92) v3.5.1cucmeB018
CsaV3_1G004850Melon (DHL92) v3.6.1cucmedB016
CsaV3_1G004850Watermelon (Charleston Gray)cucwcgB061
CsaV3_1G004850Watermelon (97103) v1cucwmB068
CsaV3_1G004850Watermelon (97103) v2cucwmbB052
CsaV3_1G004850Wax gourdcucwgoB059