CsaV3_1G004000 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G004000
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionnon-specific lipid-transfer protein 2
Locationchr1 : 2498806 .. 2499782 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGACTACAAGTTTGAAGTGGCAAACCTTTTTATTCTCGAATGATTGTCTCTCTCTCCCACTTGTTCTCCCTTTCATCCCTCCCCTATAAATTGAGATGCAAAAACCAAAGAGCAACCCCACACACACAAACCCAGAGAATCATCAAGAAGAGTACTAAAAGAAAAGATGAAGGCATCAAGAATTGGGACGGTCTTAATGATAGTAGGATTGATATTATTGATATCAAACTCAAATGAAGTAATGGTGGAAGGAGCAGATGGAGTGGCATGCAATCCGATGCAATTGAGTTCTTGTATGAACTCAATCATATCAGGAGCTCCACCATCAACCCAATGTTGCAGCAAGATCAAAGAGCAAAAGCCCTGTCTCTGTGGTTACCTCAAAAACCCTATTCTTAAGAGCTTTGTTAGTTCCCCAAATGCAAGAAAAGTAGCTAATGATTGTGGAACTCCTTTCCCAAATTGCTGAACAATCATCCATTTCATAATGGCTTGCTTGATTGTGTGTCTGTGTGTTTCTCATCACCAATCCCTCTTTCGTGTTCTATGTTCTTCTTGTCTGTAAACTGCTCCGTTTTATGTTTGTGTTTTGTTGAATAATAATATGTAATGCACAACTAATACTTTGGTAGTTTGGCTCTCCTAGTTTGGGTTGTTAGTCATTTCTTTGCAACCCAACCACAAAAAAAGGGGGAAAAAAAGCTTGTGGCTGTGGTTGGTTCCAAGTAATCAAGATAAAGATATATTTCTAAATCTTAAATCAAAGCAAGGAAGAATAATGATAGAAAGTATGTTATGAACTCGTCATAATTGATAAATCTGTTTGTTAACAACAAGCAAACACGAAGAATATTCAAGTCATCATGTTTATGATTATTAACATTTTAATTTACAATGTAACAAATGAAGAGATTATTTTCTATGAGATCAGAGGATAAGTCCATCCCACCATTAATACTTGATTAGTGCCATTAGTG

mRNA sequence

ATGAAGGCATCAAGAATTGGGACGGTCTTAATGATAGTAGGATTGATATTATTGATATCAAACTCAAATGAAGTAATGGTGGAAGGAGCAGATGGAGTGGCATGCAATCCGATGCAATTGAGTTCTTGTATGAACTCAATCATATCAGGAGCTCCACCATCAACCCAATGTTGCAGCAAGATCAAAGAGCAAAAGCCCTGTCTCTGTGGTTACCTCAAAAACCCTATTCTTAAGAGCTTTGTTAGTTCCCCAAATGCAAGAAAAGTAGCTAATGATTGTGGAACTCCTTTCCCAAATTGCTGA

Coding sequence (CDS)

ATGAAGGCATCAAGAATTGGGACGGTCTTAATGATAGTAGGATTGATATTATTGATATCAAACTCAAATGAAGTAATGGTGGAAGGAGCAGATGGAGTGGCATGCAATCCGATGCAATTGAGTTCTTGTATGAACTCAATCATATCAGGAGCTCCACCATCAACCCAATGTTGCAGCAAGATCAAAGAGCAAAAGCCCTGTCTCTGTGGTTACCTCAAAAACCCTATTCTTAAGAGCTTTGTTAGTTCCCCAAATGCAAGAAAAGTAGCTAATGATTGTGGAACTCCTTTCCCAAATTGCTGA

Protein sequence

MKASRIGTVLMIVGLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSKIKEQKPCLCGYLKNPILKSFVSSPNARKVANDCGTPFPNC
Homology
[Close]
BLAST of CsaV3_1G004000 vs. NCBI nr
Match: XP_011648973.1 (PREDICTED: non-specific lipid-transfer protein 2-like [Cucumis sativus] >KGN63840.1 hypothetical protein Csa_1G024245 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 5.7e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MKASRIGTVLMIVGLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSK 60
           MKASRIGTVLMIVGLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSK
Sbjct: 1   MKASRIGTVLMIVGLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSK 60

Query: 61  IKEQKPCLCGYLKNPILKSFVSSPNARKVANDCGTPFPNC 101
           IKEQKPCLCGYLKNPILKSFVSSPNARKVANDCGTPFPNC
Sbjct: 61  IKEQKPCLCGYLKNPILKSFVSSPNARKVANDCGTPFPNC 100

[Close]
BLAST of CsaV3_1G004000 vs. NCBI nr
Match: XP_008453433.1 (PREDICTED: non-specific lipid-transfer protein 2 [Cucumis melo])

HSP 1 Score: 191.8 bits (486), Expect = 1.1e-45
Identity = 90/100 (90.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 1   MKASRIGTVLMIVGLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSK 60
           MK SRIG++LMIVG ILLISNSNEVMVEGAD VACNPMQ+SSCMNSI+SG PPS+QCCSK
Sbjct: 1   MKTSRIGSILMIVGAILLISNSNEVMVEGADQVACNPMQMSSCMNSIVSGTPPSSQCCSK 60

Query: 61  IKEQKPCLCGYLKNPILKSFVSSPNARKVANDCGTPFPNC 101
           IKEQKPCLCGYLKNP LKSFVSSPNARKVANDCGTPFPNC
Sbjct: 61  IKEQKPCLCGYLKNPFLKSFVSSPNARKVANDCGTPFPNC 100

[Close]
BLAST of CsaV3_1G004000 vs. NCBI nr
Match: XP_023530164.1 (non-specific lipid-transfer protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.2 bits (326), Expect = 4.0e-27
Identity = 63/100 (63.00%), Postives = 77/100 (77.00%), Query Frame = 0 

Query: 1   MKASRIGTVLMIVGLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSK 60
           MKAS +  +L I+ +IL+  ++  VMVE    V CNPMQ+S C+++IIS  PPS  CC+K
Sbjct: 1   MKASWV-AILTIIAVILMSESNEMVMVE---AVTCNPMQMSPCISAIISSTPPSKLCCAK 60

Query: 61  IKEQKPCLCGYLKNPILKSFVSSPNARKVANDCGTPFPNC 101
           IKEQKPCLC YLKNP L++FV SPNARKVANDCGTPFP C
Sbjct: 61  IKEQKPCLCDYLKNPSLRNFVDSPNARKVANDCGTPFPTC 96

[Close]
BLAST of CsaV3_1G004000 vs. NCBI nr
Match: XP_022933706.1 (non-specific lipid-transfer protein 2-like [Cucurbita moschata] >XP_023001764.1 non-specific lipid-transfer protein 2 [Cucurbita maxima])

HSP 1 Score: 129.0 bits (323), Expect = 8.9e-27
Identity = 61/100 (61.00%), Postives = 77/100 (77.00%), Query Frame = 0 

Query: 1   MKASRIGTVLMIVGLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSK 60
           MKAS +  + +I   ++L+S SNE+ +   + V CNPMQ+S C+++IIS  PPS  CC+K
Sbjct: 1   MKASWVAILTIIA--VILMSESNEMAM--VEAVTCNPMQMSPCISAIISSTPPSKLCCAK 60

Query: 61  IKEQKPCLCGYLKNPILKSFVSSPNARKVANDCGTPFPNC 101
           IKEQKPCLC YLKNP L++FV SPNARKVANDCGTPFP C
Sbjct: 61  IKEQKPCLCDYLKNPSLRNFVDSPNARKVANDCGTPFPTC 96

[Close]
BLAST of CsaV3_1G004000 vs. NCBI nr
Match: XP_022135324.1 (non-specific lipid-transfer protein 2 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 2.9e-25
Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 0 

Query: 14  GLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSKIKEQKPCLCGYLK 73
           GL +L++     +VE    V C+PMQ+S C+ +IIS +PPS  CCSKIKEQKPCLCGYLK
Sbjct: 7   GLAILVAVVVAGVVEVGWAVTCSPMQMSPCVGAIISSSPPSALCCSKIKEQKPCLCGYLK 66

Query: 74  NPILKSFVSSPNARKVANDCGTPFPNC 101
           NP L+SFV SPNAR+VA+DCGTPFP C
Sbjct: 67  NPSLRSFVDSPNARRVASDCGTPFPTC 93

[Close]
BLAST of CsaV3_1G004000 vs. TAIR10
Match: AT1G73780.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 97.4 bits (241), Expect = 5.2e-21
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 0 

Query: 1   MKASRIGTVLMIVGLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSK 60
           MK S    V     ++L++  + E  V   D   CNP QLS C+ +I+ G+ PS  CCSK
Sbjct: 1   MKGSCTKPVFFTCTILLILIVAQENRVAAVD--PCNPAQLSPCLETIMKGSEPSDLCCSK 60

Query: 61  IKEQKPCLCGYLKNPILKSFVSSPNARKVANDCGTPFPNC 101
           +KEQ+ C+C YLKNP  KSF++SPNA+ +A DC  P+P C
Sbjct: 61  VKEQQHCICQYLKNPNFKSFLNSPNAKIIATDCHCPYPKC 98

[Close]
BLAST of CsaV3_1G004000 vs. TAIR10
Match: AT1G48750.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-20
Identity = 44/93 (47.31%), Postives = 63/93 (67.74%), Query Frame = 0 

Query: 8   TVLMIVGLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSKIKEQKPC 67
           +VL +   ILL++      V  A+GV C+PMQL+SC  ++         CC+K++EQ+PC
Sbjct: 8   SVLALAAAILLLT------VPVAEGVTCSPMQLASCAAAMXXXXXXXXACCTKLREQQPC 67

Query: 68  LCGYLKNPILKSFVSSPNARKVANDCGTPFPNC 101
           LCGY++NP L+ +VSSPNARKV+N C  P P+C
Sbjct: 68  LCGYMRNPTLRQYVSSPNARKVSNSCKIPSPSC 94

[Close]
BLAST of CsaV3_1G004000 vs. TAIR10
Match: AT5G38170.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-19
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 0 

Query: 1   MKASRIGTVLMIVGLIL--LISNSNEVMVEGADG-VACNPMQLSSCMNSIISGAPPSTQC 60
           MK + +  ++ +VG+++  +   + EV + G +  V C+ +QLSSC   +++G PPST+C
Sbjct: 1   MKFTALVFIVFVVGVMVSPVSIRATEVKLSGGEADVTCDAVQLSSCATPMLTGVPPSTEC 60

Query: 61  CSKIKEQKPCLCGYLKNPILKSFVSSPNARKVANDCGTPFPNC 101
           C K+KEQ+PC C Y+K+P    +V S NA+K    CG P+P C
Sbjct: 61  CGKLKEQQPCFCTYIKDPRYSQYVGSANAKKTLATCGVPYPTC 103

[Close]
BLAST of CsaV3_1G004000 vs. TAIR10
Match: AT5G38160.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 90.1 bits (222), Expect = 8.3e-19
Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = 0 

Query: 1   MKASRIGTVLMIVGLILLISNSNEVMVEGAD---GVACNPMQLSSCMNSIISGAPPSTQC 60
           MK + +  +L ++G +L        +V+G+     V C+  QLSSC+ ++ +GAPPST C
Sbjct: 1   MKFTGVVFILFVLGTMLSPVPVKARVVKGSGEEVNVTCDATQLSSCVTAVSTGAPPSTDC 60

Query: 61  CSKIKEQKPCLCGYLKNPILKSFVSSPNARKVANDCGTPFPNC 101
           C K+KE + CLC Y++NP+  S+V+SPNARK    C   +P C
Sbjct: 61  CGKLKEHETCLCTYIQNPLYSSYVTSPNARKTLAACDVAYPTC 103

[Close]
BLAST of CsaV3_1G004000 vs. TAIR10
Match: AT3G18280.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 89.0 bits (219), Expect = 1.9e-18
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 0 

Query: 12  IVGLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSKIKEQKPCLCGY 71
           +V L  L +    ++   A+ V C+PMQLS            S  CC+K+KEQ+PCLCGY
Sbjct: 8   MVSLFALAAVLLMILAPAAEAVTCSPMQLSXXXXXXXXXXXXSALCCAKLKEQRPCLCGY 67

Query: 72  LKNPILKSFVSSPNARKVANDCGTPFPNC 101
           ++NP L+ FVS+PNARKV+  C  P P C
Sbjct: 68  MRNPSLRRFVSTPNARKVSKSCKLPIPRC 96

[Close]
BLAST of CsaV3_1G004000 vs. Swiss-Prot
Match: sp|P82353|NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca OX=36596 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-21
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 0 

Query: 33  VACNPMQLSSCMNSIISGAPPSTQCCSKIKEQKPCLCGYLKNPILKSFVSSPNARKVAND 92
           V C+P+QLS C+  I SGAP  T CC K++EQ+PCLCGYLKNP L+ +V+SPNARK+A++
Sbjct: 1   VTCSPVQLSPCLGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASN 60

Query: 93  CGTPFPNC 101
           CG P P C
Sbjct: 61  CGVPVPQC 68

[Close]
BLAST of CsaV3_1G004000 vs. Swiss-Prot
Match: sp|P86809|NLTP2_APIGA (Non-specific lipid-transfer protein 2 OS=Apium graveolens var. rapaceum OX=278110 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.7e-17
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 0 

Query: 35 CNPMQLSSCMNSIISGAPPSTQCCSKIKEQKPCLCGYLKNPILKSFVSSPNARKVANDCG 94
          C+ +QLS C+ +I    PPS  CC+K+KEQKPCLCGYLK+P LK++V+SP ARK A+ CG
Sbjct: 3  CSAVQLSPCLAAITKNTPPSAACCNKLKEQKPCLCGYLKDPNLKNYVNSPGARKTASSCG 62

[Close]
BLAST of CsaV3_1G004000 vs. Swiss-Prot
Match: sp|Q10ST8|NLTPX_ORYSJ (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=LTP-2 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.5e-13
Identity = 31/74 (41.89%), Postives = 42/74 (56.76%), Query Frame = 0 

Query: 27  VEGADGVACNPMQLSSCMNSIISGAPPSTQCCSKIKEQKPCLCGYLKNPILKSFVSSPNA 86
           V G  G  CN  QL+ C  +I  GA P+  CCS ++ Q+ C C + K+P    +V+SPNA
Sbjct: 22  VVGVAGAGCNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNA 81

Query: 87  RKVANDCGTPFPNC 101
           RK  + CG   P C
Sbjct: 82  RKAVSSCGIALPTC 95

[Close]
BLAST of CsaV3_1G004000 vs. Swiss-Prot
Match: sp|P82901|NLT2P_WHEAT (Non-specific lipid-transfer protein 2P OS=Triticum aestivum OX=4565 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.5e-12
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 0 

Query: 34  ACNPMQLSSCMNSIISGAPPSTQCCSKIKEQKPCLCGYLKNPILKSFVSSPNARKVANDC 93
           AC   QL+ C ++I+SGA PS +CC  ++ Q+PC C Y K+P    ++ SP+AR     C
Sbjct: 1   ACQASQLAVCASAILSGAKPSGECCGNLRAQQPCFCQYAKDPTYGQYIRSPHARDTLQSC 60

Query: 94  GTPFPNC 101
           G   P+C
Sbjct: 61  GLAVPHC 67

[Close]
BLAST of CsaV3_1G004000 vs. Swiss-Prot
Match: sp|A2XBN5|NLTPX_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=LTP-2 PE=3 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 2.5e-12
Identity = 33/96 (34.38%), Postives = 51/96 (53.12%), Query Frame = 0 

Query: 5   RIGTVLMIVGLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSKIKEQ 64
           R+  +++ V ++          V G  G +CN  QL+ C  +I  GA P+  CCS ++ Q
Sbjct: 4   RLAVLVLAVAMVAACGGG----VVGVAGASCNAGQLTVCAGAIAGGARPTAACCSSLRAQ 63

Query: 65  KPCLCGYLKNPILKSFVSSPNARKVANDCGTPFPNC 101
           + C C + K+P    +V+SPNARK  + CG   P C
Sbjct: 64  QGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95

[Close]
BLAST of CsaV3_1G004000 vs. TrEMBL
Match: tr|A0A0A0LPL9|A0A0A0LPL9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G024245 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.8e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MKASRIGTVLMIVGLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSK 60
           MKASRIGTVLMIVGLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSK
Sbjct: 1   MKASRIGTVLMIVGLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSK 60

Query: 61  IKEQKPCLCGYLKNPILKSFVSSPNARKVANDCGTPFPNC 101
           IKEQKPCLCGYLKNPILKSFVSSPNARKVANDCGTPFPNC
Sbjct: 61  IKEQKPCLCGYLKNPILKSFVSSPNARKVANDCGTPFPNC 100

[Close]
BLAST of CsaV3_1G004000 vs. TrEMBL
Match: tr|A0A1S3BXE4|A0A1S3BXE4_CUCME (non-specific lipid-transfer protein 2 OS=Cucumis melo OX=3656 GN=LOC103494141 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 7.4e-46
Identity = 90/100 (90.00%), Postives = 95/100 (95.00%), Query Frame = 0 

Query: 1   MKASRIGTVLMIVGLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSK 60
           MK SRIG++LMIVG ILLISNSNEVMVEGAD VACNPMQ+SSCMNSI+SG PPS+QCCSK
Sbjct: 1   MKTSRIGSILMIVGAILLISNSNEVMVEGADQVACNPMQMSSCMNSIVSGTPPSSQCCSK 60

Query: 61  IKEQKPCLCGYLKNPILKSFVSSPNARKVANDCGTPFPNC 101
           IKEQKPCLCGYLKNP LKSFVSSPNARKVANDCGTPFPNC
Sbjct: 61  IKEQKPCLCGYLKNPFLKSFVSSPNARKVANDCGTPFPNC 100

[Close]
BLAST of CsaV3_1G004000 vs. TrEMBL
Match: tr|I1KJ10|I1KJ10_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_07G096700 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.7e-24
Identity = 61/100 (61.00%), Postives = 71/100 (71.00%), Query Frame = 0 

Query: 1   MKASRIGTVLMIVGLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSK 60
           MKASRI    ++V L +      EV V  A  V C+P+QLS+C+++I S  PPS  CCSK
Sbjct: 1   MKASRIALFTLVVLLFVA-----EVQVSKA--VTCSPVQLSACVSAITSSTPPSNLCCSK 60

Query: 61  IKEQKPCLCGYLKNPILKSFVSSPNARKVANDCGTPFPNC 101
           IKEQKPCLC YLKNP LK FV SPNAR+VAN CGTPFP C
Sbjct: 61  IKEQKPCLCQYLKNPNLKKFVDSPNARRVANTCGTPFPRC 93

[Close]
BLAST of CsaV3_1G004000 vs. TrEMBL
Match: tr|A0A251Q082|A0A251Q082_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G147900 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.7e-24
Identity = 55/100 (55.00%), Postives = 71/100 (71.00%), Query Frame = 0 

Query: 1   MKASRIGTVLMIVGLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSK 60
           MK S  G  L +V ++ ++ +    M E    V C+P++LSSC+  I+SG PPST CC K
Sbjct: 2   MKLSCCGVGLCVVVMMAMVLSEEARMTE---AVTCSPLELSSCLEPIMSGTPPSTTCCQK 61

Query: 61  IKEQKPCLCGYLKNPILKSFVSSPNARKVANDCGTPFPNC 101
           ++EQKPCLCGYLK+P LK +VSSPNARKVA+ CG PFP C
Sbjct: 62  LREQKPCLCGYLKDPALKQYVSSPNARKVASTCGVPFPQC 98

[Close]
BLAST of CsaV3_1G004000 vs. TrEMBL
Match: tr|A0A0B2SJW0|A0A0B2SJW0_GLYSO (Putative non-specific lipid-transfer protein AKCS9 OS=Glycine soja OX=3848 GN=glysoja_027180 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.7e-24
Identity = 61/100 (61.00%), Postives = 71/100 (71.00%), Query Frame = 0 

Query: 1   MKASRIGTVLMIVGLILLISNSNEVMVEGADGVACNPMQLSSCMNSIISGAPPSTQCCSK 60
           MKASRI    ++V L +      EV V  A  V C+P+QLS+C+++I S  PPS  CCSK
Sbjct: 1   MKASRIALFTLVVLLFVA-----EVQVSKA--VTCSPVQLSACVSAITSSTPPSNLCCSK 60

Query: 61  IKEQKPCLCGYLKNPILKSFVSSPNARKVANDCGTPFPNC 101
           IKEQKPCLC YLKNP LK FV SPNAR+VAN CGTPFP C
Sbjct: 61  IKEQKPCLCQYLKNPNLKKFVDSPNARRVANTCGTPFPRC 93

The following BLAST results are available for this feature:
BLAST of CsaV3_1G004000 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011648973.15.7e-50100.00PREDICTED: non-specific lipid-transfer protein 2-like [Cucumis sativus] >KGN6384... [more]
XP_008453433.11.1e-4590.00PREDICTED: non-specific lipid-transfer protein 2 [Cucumis melo][more]
XP_023530164.14.0e-2763.00non-specific lipid-transfer protein 2-like [Cucurbita pepo subsp. pepo][more]
XP_022933706.18.9e-2761.00non-specific lipid-transfer protein 2-like [Cucurbita moschata] >XP_023001764.1 ... [more]
XP_022135324.12.9e-2564.37non-specific lipid-transfer protein 2 [Momordica charantia][more]
BLAST of CsaV3_1G004000 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G73780.15.2e-2146.00Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT1G48750.11.5e-2047.31Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT5G38170.11.3e-1939.81Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT5G38160.18.3e-1940.78Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT3G18280.11.9e-1844.94Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
BLAST of CsaV3_1G004000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P82353|NLTP2_PRUAR1.0e-2161.76Non-specific lipid-transfer protein 2 OS=Prunus armeniaca OX=36596 PE=1 SV=1[more]
sp|P86809|NLTP2_APIGA5.7e-1760.00Non-specific lipid-transfer protein 2 OS=Apium graveolens var. rapaceum OX=27811... [more]
sp|Q10ST8|NLTPX_ORYSJ8.5e-1341.89Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
sp|P82901|NLT2P_WHEAT2.5e-1241.79Non-specific lipid-transfer protein 2P OS=Triticum aestivum OX=4565 PE=1 SV=1[more]
sp|A2XBN5|NLTPX_ORYSI2.5e-1234.38Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=... [more]
BLAST of CsaV3_1G004000 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LPL9|A0A0A0LPL9_CUCSA3.8e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G024245 PE=4 SV=1[more]
tr|A0A1S3BXE4|A0A1S3BXE4_CUCME7.4e-4690.00non-specific lipid-transfer protein 2 OS=Cucumis melo OX=3656 GN=LOC103494141 PE... [more]
tr|I1KJ10|I1KJ10_SOYBN4.7e-2461.00Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_07G096700 PE=4 SV=1[more]
tr|A0A251Q082|A0A251Q082_PRUPE4.7e-2455.00Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G147900 PE=4 SV=1[more]
tr|A0A0B2SJW0|A0A0B2SJW0_GLYSO4.7e-2461.00Putative non-specific lipid-transfer protein AKCS9 OS=Glycine soja OX=3848 GN=gl... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006869lipid transport
Vocabulary: INTERPRO
TermDefinition
IPR036312Bifun_inhib/LTP/seed_sf
IPR033872nsLTP2
IPR016140Bifunc_inhib/LTP/seed_store
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006869 lipid transport
biological_process GO:0008150 biological_process
biological_process GO:0006508 proteolysis
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008233 peptidase activity
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G004000.1CsaV3_1G004000.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainSMARTSM00499aai_6coord: 35..100
e-value: 2.8E-4
score: 30.2
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 18..96
e-value: 5.1E-8
score: 32.9
NoneNo IPR availableGENE3DG3DSA:1.10.110.10coord: 34..100
e-value: 6.1E-24
score: 86.0
NoneNo IPR availablePANTHERPTHR33214:SF11SUBFAMILY NOT NAMEDcoord: 9..100
IPR033872Non-specific lipid-transfer protein type 2PANTHERPTHR33214FAMILY NOT NAMEDcoord: 9..100
IPR033872Non-specific lipid-transfer protein type 2CDDcd01959nsLTP2coord: 35..100
e-value: 3.87383E-30
score: 102.777
IPR036312Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamilySUPERFAMILYSSF47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 34..100

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G004000CSPI01G06960Wild cucumber (PI 183967)cpicucB002
CsaV3_1G004000CSPI01G03990Wild cucumber (PI 183967)cpicucB001
CsaV3_1G004000Cucsa.121700Cucumber (Gy14) v1cgycucB164
CsaV3_1G004000Cucsa.111210Cucumber (Gy14) v1cgycucB143
CsaV3_1G004000CmaCh18G000500Cucurbita maxima (Rimu)cmacucB0466
CsaV3_1G004000CmaCh11G002880Cucurbita maxima (Rimu)cmacucB0101
CsaV3_1G004000CmoCh11G002910Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G004000CmoCh13G010480Cucurbita moschata (Rifu)cmocucB0238
CsaV3_1G004000Cp4.1LG09g11250Cucurbita pepo (Zucchini)cpecucB0033
CsaV3_1G004000Cp4.1LG20g01380Cucurbita pepo (Zucchini)cpecucB0627
CsaV3_1G004000Cp4.1LG04g13810Cucurbita pepo (Zucchini)cpecucB0815
CsaV3_1G004000CsGy1G006790Cucumber (Gy14) v2cgybcucB003
CsaV3_1G004000Carg04828Silver-seed gourdcarcucB0419
CsaV3_1G004000Carg09127Silver-seed gourdcarcucB0629
CsaV3_1G004000Cla018480Watermelon (97103) v1cucwmB071
CsaV3_1G004000Cla018957Watermelon (97103) v1cucwmB106
CsaV3_1G004000ClCG04G010940Watermelon (Charleston Gray)cucwcgB064
CsaV3_1G004000Lsi02G002080Bottle gourd (USVL1VR-Ls)cuclsiB024
CsaV3_1G004000Lsi06G013150Bottle gourd (USVL1VR-Ls)cuclsiB082
CsaV3_1G004000Cla97C04G077720Watermelon (97103) v2cucwmbB055
CsaV3_1G004000Bhi01G002683Wax gourdcucwgoB012
CsaV3_1G004000Bhi08G001048Wax gourdcucwgoB042
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G004000Silver-seed gourdcarcucB0549
CsaV3_1G004000Silver-seed gourdcarcucB0824
CsaV3_1G004000Silver-seed gourdcarcucB0880
CsaV3_1G004000Cucumber (Gy14) v2cgybcucB002
CsaV3_1G004000Cucumber (Gy14) v2cgybcucB201
CsaV3_1G004000Cucumber (Gy14) v1cgycucB436
CsaV3_1G004000Cucurbita maxima (Rimu)cmacucB0060
CsaV3_1G004000Cucurbita maxima (Rimu)cmacucB0252
CsaV3_1G004000Cucurbita maxima (Rimu)cmacucB0481
CsaV3_1G004000Cucurbita maxima (Rimu)cmacucB0817
CsaV3_1G004000Cucurbita moschata (Rifu)cmocucB0046
CsaV3_1G004000Cucurbita moschata (Rifu)cmocucB0467
CsaV3_1G004000Cucurbita moschata (Rifu)cmocucB0803
CsaV3_1G004000Cucurbita pepo (Zucchini)cpecucB0026
CsaV3_1G004000Cucurbita pepo (Zucchini)cpecucB0444
CsaV3_1G004000Cucurbita pepo (Zucchini)cpecucB0474
CsaV3_1G004000Wild cucumber (PI 183967)cpicucB255
CsaV3_1G004000Bottle gourd (USVL1VR-Ls)cuclsiB060
CsaV3_1G004000Melon (DHL92) v3.5.1cucmeB006
CsaV3_1G004000Melon (DHL92) v3.5.1cucmeB026
CsaV3_1G004000Melon (DHL92) v3.5.1cucmeB055
CsaV3_1G004000Melon (DHL92) v3.6.1cucmedB006
CsaV3_1G004000Melon (DHL92) v3.6.1cucmedB024
CsaV3_1G004000Melon (DHL92) v3.6.1cucmedB051
CsaV3_1G004000Watermelon (Charleston Gray)cucwcgB071
CsaV3_1G004000Watermelon (Charleston Gray)cucwcgB089
CsaV3_1G004000Watermelon (97103) v1cucwmB045
CsaV3_1G004000Watermelon (97103) v2cucwmbB060
CsaV3_1G004000Watermelon (97103) v2cucwmbB077
CsaV3_1G004000Wax gourdcucwgoB075
CsaV3_1G004000Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G004000Cucumber (Chinese Long) v3cuccucB036