CsaV3_1G003290 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G003290
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 2042506 .. 2042718 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCCACAAGAGGACGTGGAACTAGTTCGATTGAAAGAGATGTCCTACTTGGAGGAGCCTGGGCCCACCTTACGCGTCAGCCAAAGAGGAAAGGGAGTGGCCAACACGCTCGCTAGATTCGCGTGTGTTATCGGAAAAGTGGGTCCCACGTCCACGTTGTGGTTAAAGAGTGGTTCAGCGTCTTTTAGGGCCGTGGTGTACCTCACGTGA

mRNA sequence

ATGGACCCACAAGAGGACGTGGAACTAGTTCGATTGAAAGAGATGTCCTACTTGGAGGAGCCTGGGCCCACCTTACGCGTCAGCCAAAGAGGAAAGGGAGTGGCCAACACGCTCGCTAGATTCGCGTGTGTTATCGGAAAAGTGGGTCCCACGTCCACGTTGTGGTTAAAGAGTGGTTCAGCGTCTTTTAGGGCCGTGGTGTACCTCACGTGA

Coding sequence (CDS)

ATGGACCCACAAGAGGACGTGGAACTAGTTCGATTGAAAGAGATGTCCTACTTGGAGGAGCCTGGGCCCACCTTACGCGTCAGCCAAAGAGGAAAGGGAGTGGCCAACACGCTCGCTAGATTCGCGTGTGTTATCGGAAAAGTGGGTCCCACGTCCACGTTGTGGTTAAAGAGTGGTTCAGCGTCTTTTAGGGCCGTGGTGTACCTCACGTGA

Protein sequence

MDPQEDVELVRLKEMSYLEEPGPTLRVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGSASFRAVVYLT
Homology
[Close]
BLAST of CsaV3_1G003290 vs. NCBI nr
Match: KGN63764.1 (hypothetical protein Csa_1G015585 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MDPQEDVELVRLKEMSYLEEPGPTLRVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGS 60
          MDPQEDVELVRLKEMSYLEEPGPTLRVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGS
Sbjct: 1  MDPQEDVELVRLKEMSYLEEPGPTLRVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGS 60

Query: 61 ASFRAVVYLT 71
          ASFRAVVYLT
Sbjct: 61 ASFRAVVYLT 70

[Close]
BLAST of CsaV3_1G003290 vs. TrEMBL
Match: tr|A0A0A0LRW8|A0A0A0LRW8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015585 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.1e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MDPQEDVELVRLKEMSYLEEPGPTLRVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGS 60
          MDPQEDVELVRLKEMSYLEEPGPTLRVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGS
Sbjct: 1  MDPQEDVELVRLKEMSYLEEPGPTLRVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGS 60

Query: 61 ASFRAVVYLT 71
          ASFRAVVYLT
Sbjct: 61 ASFRAVVYLT 70

The following BLAST results are available for this feature:
BLAST of CsaV3_1G003290 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63764.11.2e-30100.00hypothetical protein Csa_1G015585 [Cucumis sativus][more]
BLAST of CsaV3_1G003290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G003290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G003290 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRW8|A0A0A0LRW8_CUCSA8.1e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015585 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G003290.1CsaV3_1G003290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G003290CSPI01G03230Wild cucumber (PI 183967)cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G003290Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G003290Cucumber (Chinese Long) v3cuccucB004
CsaV3_1G003290Silver-seed gourdcarcucB0419
CsaV3_1G003290Silver-seed gourdcarcucB0494
CsaV3_1G003290Silver-seed gourdcarcucB0497
CsaV3_1G003290Silver-seed gourdcarcucB0549
CsaV3_1G003290Silver-seed gourdcarcucB0627
CsaV3_1G003290Silver-seed gourdcarcucB0629
CsaV3_1G003290Cucumber (Gy14) v2cgybcucB002
CsaV3_1G003290Cucumber (Gy14) v2cgybcucB003
CsaV3_1G003290Cucumber (Gy14) v2cgybcucB013
CsaV3_1G003290Cucumber (Gy14) v1cgycucB146
CsaV3_1G003290Cucumber (Gy14) v1cgycucB314
CsaV3_1G003290Cucurbita maxima (Rimu)cmacucB0061
CsaV3_1G003290Cucurbita maxima (Rimu)cmacucB0101
CsaV3_1G003290Cucurbita maxima (Rimu)cmacucB0115
CsaV3_1G003290Cucurbita maxima (Rimu)cmacucB0244
CsaV3_1G003290Cucurbita maxima (Rimu)cmacucB0252
CsaV3_1G003290Cucurbita maxima (Rimu)cmacucB0466
CsaV3_1G003290Cucurbita moschata (Rifu)cmocucB0047
CsaV3_1G003290Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G003290Cucurbita moschata (Rifu)cmocucB0103
CsaV3_1G003290Cucurbita moschata (Rifu)cmocucB0230
CsaV3_1G003290Cucurbita moschata (Rifu)cmocucB0463
CsaV3_1G003290Cucurbita pepo (Zucchini)cpecucB0033
CsaV3_1G003290Cucurbita pepo (Zucchini)cpecucB0431
CsaV3_1G003290Cucurbita pepo (Zucchini)cpecucB0445
CsaV3_1G003290Cucurbita pepo (Zucchini)cpecucB0627
CsaV3_1G003290Cucurbita pepo (Zucchini)cpecucB0642
CsaV3_1G003290Cucurbita pepo (Zucchini)cpecucB0798
CsaV3_1G003290Wild cucumber (PI 183967)cpicucB002
CsaV3_1G003290Wild cucumber (PI 183967)cpicucB016
CsaV3_1G003290Bottle gourd (USVL1VR-Ls)cuclsiB024
CsaV3_1G003290Bottle gourd (USVL1VR-Ls)cuclsiB042
CsaV3_1G003290Bottle gourd (USVL1VR-Ls)cuclsiB071
CsaV3_1G003290Melon (DHL92) v3.5.1cucmeB020
CsaV3_1G003290Melon (DHL92) v3.5.1cucmeB026
CsaV3_1G003290Melon (DHL92) v3.5.1cucmeB046
CsaV3_1G003290Melon (DHL92) v3.6.1cucmedB018
CsaV3_1G003290Melon (DHL92) v3.6.1cucmedB024
CsaV3_1G003290Melon (DHL92) v3.6.1cucmedB043
CsaV3_1G003290Watermelon (Charleston Gray)cucwcgB062
CsaV3_1G003290Watermelon (Charleston Gray)cucwcgB064
CsaV3_1G003290Watermelon (Charleston Gray)cucwcgB077
CsaV3_1G003290Watermelon (97103) v1cucwmB069
CsaV3_1G003290Watermelon (97103) v1cucwmB071
CsaV3_1G003290Watermelon (97103) v1cucwmB094
CsaV3_1G003290Watermelon (97103) v2cucwmbB053
CsaV3_1G003290Watermelon (97103) v2cucwmbB055
CsaV3_1G003290Watermelon (97103) v2cucwmbB066
CsaV3_1G003290Wax gourdcucwgoB046
CsaV3_1G003290Wax gourdcucwgoB088