CSPI01G03230 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G03230
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 2028956 .. 2029168 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCCACAAGAGGACGTGGAACTAGTTCGATTGAAAGAGATGTCCTACTTGGAGGAGCCTGGGCCCACCTCACGCGTCAGCCAAAGAGGAAAGGGAGTGGCCAACACGCTCGCTAGATTCGCGTGTGTTATCGGAAAAGTGGGTCCCACGTCCACGTTGTGGTTAAAGAGTGGTTCAGCGTCTTTTAGGGCCGTGGTGTACCTCACGTGA

mRNA sequence

ATGGACCCACAAGAGGACGTGGAACTAGTTCGATTGAAAGAGATGTCCTACTTGGAGGAGCCTGGGCCCACCTCACGCGTCAGCCAAAGAGGAAAGGGAGTGGCCAACACGCTCGCTAGATTCGCGTGTGTTATCGGAAAAGTGGGTCCCACGTCCACGTTGTGGTTAAAGAGTGGTTCAGCGTCTTTTAGGGCCGTGGTGTACCTCACGTGA

Coding sequence (CDS)

ATGGACCCACAAGAGGACGTGGAACTAGTTCGATTGAAAGAGATGTCCTACTTGGAGGAGCCTGGGCCCACCTCACGCGTCAGCCAAAGAGGAAAGGGAGTGGCCAACACGCTCGCTAGATTCGCGTGTGTTATCGGAAAAGTGGGTCCCACGTCCACGTTGTGGTTAAAGAGTGGTTCAGCGTCTTTTAGGGCCGTGGTGTACCTCACGTGA
Homology
[Close]
BLAST of CSPI01G03230 vs. TrEMBL
Match: A0A0A0LRW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015585 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.2e-30
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1  MDPQEDVELVRLKEMSYLEEPGPTSRVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGS 60
          MDPQEDVELVRLKEMSYLEEPGPT RVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGS
Sbjct: 1  MDPQEDVELVRLKEMSYLEEPGPTLRVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGS 60

Query: 61 ASFRAVVYLT 71
          ASFRAVVYLT
Sbjct: 61 ASFRAVVYLT 70

[Close]
BLAST of CSPI01G03230 vs. NCBI nr
Match: gi|700208668|gb|KGN63764.1| (hypothetical protein Csa_1G015585 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 3.1e-30
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 

Query: 1  MDPQEDVELVRLKEMSYLEEPGPTSRVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGS 60
          MDPQEDVELVRLKEMSYLEEPGPT RVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGS
Sbjct: 1  MDPQEDVELVRLKEMSYLEEPGPTLRVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGS 60

Query: 61 ASFRAVVYLT 71
          ASFRAVVYLT
Sbjct: 61 ASFRAVVYLT 70

The following BLAST results are available for this feature:
BLAST of CSPI01G03230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G03230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRW8_CUCSA2.2e-3098.57Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015585 PE=4 SV=1[more]
BLAST of CSPI01G03230 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G03230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208668|gb|KGN63764.1|3.1e-3098.57hypothetical protein Csa_1G015585 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G03230.1CSPI01G03230.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G03230CsaV3_1G003290Cucumber (Chinese Long) v3cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G03230Silver-seed gourdcarcpiB0497
CSPI01G03230Silver-seed gourdcarcpiB0500
CSPI01G03230Silver-seed gourdcarcpiB0550
CSPI01G03230Silver-seed gourdcarcpiB0626
CSPI01G03230Silver-seed gourdcarcpiB0628
CSPI01G03230Watermelon (97103) v2cpiwmbB054
CSPI01G03230Watermelon (97103) v2cpiwmbB071
CSPI01G03230Wax gourdcpiwgoB043
CSPI01G03230Wax gourdcpiwgoB082
CSPI01G03230Wild cucumber (PI 183967)cpicpiB004
CSPI01G03230Cucumber (Gy14) v1cgycpiB140
CSPI01G03230Cucumber (Gy14) v1cgycpiB310
CSPI01G03230Cucurbita maxima (Rimu)cmacpiB052
CSPI01G03230Cucurbita maxima (Rimu)cmacpiB086
CSPI01G03230Cucurbita maxima (Rimu)cmacpiB101
CSPI01G03230Cucurbita maxima (Rimu)cmacpiB217
CSPI01G03230Cucurbita maxima (Rimu)cmacpiB397
CSPI01G03230Cucurbita moschata (Rifu)cmocpiB043
CSPI01G03230Cucurbita moschata (Rifu)cmocpiB079
CSPI01G03230Cucurbita moschata (Rifu)cmocpiB093
CSPI01G03230Cucurbita moschata (Rifu)cmocpiB203
CSPI01G03230Cucurbita moschata (Rifu)cmocpiB388
CSPI01G03230Cucumber (Chinese Long) v2cpicuB000
CSPI01G03230Cucumber (Chinese Long) v2cpicuB011
CSPI01G03230Melon (DHL92) v3.5.1cpimeB020
CSPI01G03230Melon (DHL92) v3.5.1cpimeB046
CSPI01G03230Watermelon (Charleston Gray)cpiwcgB058
CSPI01G03230Watermelon (Charleston Gray)cpiwcgB074
CSPI01G03230Watermelon (97103) v1cpiwmB065
CSPI01G03230Watermelon (97103) v1cpiwmB089
CSPI01G03230Cucurbita pepo (Zucchini)cpecpiB029
CSPI01G03230Cucurbita pepo (Zucchini)cpecpiB353
CSPI01G03230Cucurbita pepo (Zucchini)cpecpiB364
CSPI01G03230Cucurbita pepo (Zucchini)cpecpiB642
CSPI01G03230Bottle gourd (USVL1VR-Ls)cpilsiB042
CSPI01G03230Bottle gourd (USVL1VR-Ls)cpilsiB062
CSPI01G03230Melon (DHL92) v3.6.1cpimedB019
CSPI01G03230Melon (DHL92) v3.6.1cpimedB040
CSPI01G03230Cucumber (Gy14) v2cgybcpiB001