CsaV3_1G003290.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G003290.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 2042506 .. 2042718 (+)
Sequence length213
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCCACAAGAGGACGTGGAACTAGTTCGATTGAAAGAGATGTCCTACTTGGAGGAGCCTGGGCCCACCTTACGCGTCAGCCAAAGAGGAAAGGGAGTGGCCAACACGCTCGCTAGATTCGCGTGTGTTATCGGAAAAGTGGGTCCCACGTCCACGTTGTGGTTAAAGAGTGGTTCAGCGTCTTTTAGGGCCGTGGTGTACCTCACGTGA

mRNA sequence

ATGGACCCACAAGAGGACGTGGAACTAGTTCGATTGAAAGAGATGTCCTACTTGGAGGAGCCTGGGCCCACCTTACGCGTCAGCCAAAGAGGAAAGGGAGTGGCCAACACGCTCGCTAGATTCGCGTGTGTTATCGGAAAAGTGGGTCCCACGTCCACGTTGTGGTTAAAGAGTGGTTCAGCGTCTTTTAGGGCCGTGGTGTACCTCACGTGA

Coding sequence (CDS)

ATGGACCCACAAGAGGACGTGGAACTAGTTCGATTGAAAGAGATGTCCTACTTGGAGGAGCCTGGGCCCACCTTACGCGTCAGCCAAAGAGGAAAGGGAGTGGCCAACACGCTCGCTAGATTCGCGTGTGTTATCGGAAAAGTGGGTCCCACGTCCACGTTGTGGTTAAAGAGTGGTTCAGCGTCTTTTAGGGCCGTGGTGTACCTCACGTGA

Protein sequence

MDPQEDVELVRLKEMSYLEEPGPTLRVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGSASFRAVVYLT
Homology
[Close]
BLAST of CsaV3_1G003290.1 vs. NCBI nr
Match: KGN63764.1 (hypothetical protein Csa_1G015585 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MDPQEDVELVRLKEMSYLEEPGPTLRVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGS 60
          MDPQEDVELVRLKEMSYLEEPGPTLRVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGS
Sbjct: 1  MDPQEDVELVRLKEMSYLEEPGPTLRVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGS 60

Query: 61 ASFRAVVYLT 71
          ASFRAVVYLT
Sbjct: 61 ASFRAVVYLT 70

[Close]
BLAST of CsaV3_1G003290.1 vs. TrEMBL
Match: tr|A0A0A0LRW8|A0A0A0LRW8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015585 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.1e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MDPQEDVELVRLKEMSYLEEPGPTLRVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGS 60
          MDPQEDVELVRLKEMSYLEEPGPTLRVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGS
Sbjct: 1  MDPQEDVELVRLKEMSYLEEPGPTLRVSQRGKGVANTLARFACVIGKVGPTSTLWLKSGS 60

Query: 61 ASFRAVVYLT 71
          ASFRAVVYLT
Sbjct: 61 ASFRAVVYLT 70

The following BLAST results are available for this feature:
BLAST of CsaV3_1G003290.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63764.11.2e-30100.00hypothetical protein Csa_1G015585 [Cucumis sativus][more]
BLAST of CsaV3_1G003290.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G003290.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G003290.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRW8|A0A0A0LRW8_CUCSA8.1e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015585 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G003290CsaV3_1G003290gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G003290.1.exon1CsaV3_1G003290.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G003290.1.cds1CsaV3_1G003290.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G003290.1CsaV3_1G003290.1-proteinpolypeptide