CsaV3_1G001100 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G001100
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPantothenate synthetase
Locationchr1 : 627943 .. 628153 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGTCCATGTTTCTTGCTTGGAGGAATCCGGTTCAGAGGATGAGACATCAGTGAGGGTTAAGCGTTTGGAGGACATGTGTGGGAGAAGTAGACTTGTGTTCTTTAGAGGGGTTGCTACTGTTGTTACTAAGTTGTTCAATATTGTGGAACTCGATGTTGCAGTGTTTGGAAAGAAGGATTATCAGCAATGGCTAGATTATCAGGCGGATG

mRNA sequence

AATGTCCATGTTTCTTGCTTGGAGGAATCCGGTTCAGAGGATGAGACATCAGTGAGGGTTAAGCGTTTGGAGGACATGTGTGGGAGAAGTAGACTTGTGTTCTTTAGAGGGGTTGCTACTGTTGTTACTAAGTTGTTCAATATTGTGGAACTCGATGTTGCAGTGTTTGGAAAGAAGGATTATCAGCAATGGCTAGATTATCAGGCGGATG

Coding sequence (CDS)

AATGTCCATGTTTCTTGCTTGGAGGAATCCGGTTCAGAGGATGAGACATCAGTGAGGGTTAAGCGTTTGGAGGACATGTGTGGGAGAAGTAGACTTGTGTTCTTTAGAGGGGTTGCTACTGTTGTTACTAAGTTGTTCAATATTGTGGAACTCGATGTTGCAGTGTTTGGAAAGAAGGATTATCAGCAATGGCTAGATTATCAGGCGGATG

Protein sequence

NVHVSCLEESGSEDETSVRVKRLEDMCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQWLDYQADX
BLAST of CsaV3_1G001100 vs. NCBI nr
Match: KGN43706.1 (hypothetical protein Csa_7G061730 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0

Query: 9  ESGSEDETSVRVKRLE-DMCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQWLDY 68
          +SGSEDETSVRVKRLE DMC RSRLVFFRGVATVVTKLFNIVELDVAVF KKDYQQWLDY
Sbjct: 23 DSGSEDETSVRVKRLEKDMCWRSRLVFFRGVATVVTKLFNIVELDVAVFEKKDYQQWLDY 82

Query: 69 QAD 71
          QAD
Sbjct: 83 QAD 85

BLAST of CsaV3_1G001100 vs. NCBI nr
Match: XP_022931128.1 (pantoate--beta-alanine ligase-like [Cucurbita moschata])

HSP 1 Score: 102.8 bits (255), Expect = 4.8e-19
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 5   SCLEESGSEDETSVRVKRLE-DMCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQ 64
           SCLEESGSE ET VRV+RLE  MCGRSR VFFRGVAT+VTKLFNIVE DVAVFGKKDYQQ
Sbjct: 129 SCLEESGSEHETWVRVERLEKGMCGRSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDYQQ 188

BLAST of CsaV3_1G001100 vs. NCBI nr
Match: XP_022996300.1 (pantoate--beta-alanine ligase-like [Cucurbita maxima])

HSP 1 Score: 102.4 bits (254), Expect = 6.3e-19
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 5   SCLEESGSEDETSVRVKRLE-DMCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQ 64
           SCLEESGSE ET VRV+RLE  MCGRSR VFFRGVAT+VTKLFN+VE DVAVFGKKDYQQ
Sbjct: 129 SCLEESGSEHETWVRVERLEKGMCGRSRPVFFRGVATIVTKLFNVVEPDVAVFGKKDYQQ 188

BLAST of CsaV3_1G001100 vs. NCBI nr
Match: XP_023533404.1 (pantoate--beta-alanine ligase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 100.1 bits (248), Expect = 3.1e-18
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 5   SCLEESGSEDETSVRVKRLE-DMCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQ 64
           SCLEESGSE ET VRV+RLE  MCGRSR V FRGVAT+VTKLFNIVE DVAVFGKKDYQQ
Sbjct: 129 SCLEESGSEHETWVRVERLEKGMCGRSRPVVFRGVATIVTKLFNIVEPDVAVFGKKDYQQ 188

BLAST of CsaV3_1G001100 vs. NCBI nr
Match: KGN58349.1 (hypothetical protein Csa_3G625640 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 6.9e-18
Identity = 52/62 (83.87%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 4   VSCLEESGSEDETSVRVKRLE-DMCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQ 63
           VSCLEESGS  ET VRV+RLE  MCGRSR VFFRGVATVV KLFNIV+ DVAVFGKKDYQ
Sbjct: 294 VSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVAVFGKKDYQ 353

Query: 64  QW 65
           QW
Sbjct: 354 QW 355

BLAST of CsaV3_1G001100 vs. TAIR10
Match: AT5G48840.1 (homolog of bacterial PANC)

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-19
Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 4   VSCLEESGSEDETSVRVKRLE-DMCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQ 63
           VSC+EE G   ET +RV+RLE   CG+SR VFFRGVAT+VTKLFNIVE DVA+FGKKDYQ
Sbjct: 121 VSCVEEGGLGHETWIRVERLEKGFCGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQ 180

Query: 64  QW 65
           QW
Sbjct: 181 QW 182

BLAST of CsaV3_1G001100 vs. Swiss-Prot
Match: sp|Q9FKB3|PANC_ARATH (Pantoate--beta-alanine ligase OS=Arabidopsis thaliana OX=3702 GN=At5g48840 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.8e-18
Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 4   VSCLEESGSEDETSVRVKRLE-DMCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQ 63
           VSC+EE G   ET +RV+RLE   CG+SR VFFRGVAT+VTKLFNIVE DVA+FGKKDYQ
Sbjct: 121 VSCVEEGGLGHETWIRVERLEKGFCGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQ 180

Query: 64  QW 65
           QW
Sbjct: 181 QW 182

BLAST of CsaV3_1G001100 vs. Swiss-Prot
Match: sp|O24210|PANC_ORYSJ (Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica OX=39947 GN=PANC PE=2 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-17
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 4   VSCLEE-SGSEDETSVRVKRLE-DMCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDY 63
           +SCLEE +G   ET VRV+RLE  MCG SR VFFRGVAT+V+KLFNI+E DVAVFGKKDY
Sbjct: 123 ISCLEEAAGDGHETWVRVERLEKGMCGASRPVFFRGVATIVSKLFNIIEPDVAVFGKKDY 182

Query: 64  QQW 65
           QQW
Sbjct: 183 QQW 185

BLAST of CsaV3_1G001100 vs. Swiss-Prot
Match: sp|O24035|PANC_LOTJA (Pantoate--beta-alanine ligase OS=Lotus japonicus OX=34305 GN=PANC PE=1 SV=3)

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-16
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 4   VSCLE-ESGSEDETSVRVKRLE-DMCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDY 63
           VSC++  SG   ET VR ++LE  +CG+SR VFFRGVAT+VTKLFNIVE DVAVFGKKDY
Sbjct: 120 VSCVDRRSGFGHETWVRAEKLEKPLCGKSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDY 179

Query: 64  QQW 65
           QQW
Sbjct: 180 QQW 182

BLAST of CsaV3_1G001100 vs. Swiss-Prot
Match: sp|B8CTC7|PANC_SHEPW (Pantothenate synthetase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) OX=225849 GN=panC PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.2e-10
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 5   SCLEESGSEDETSVRVKRLED-MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQ 64
           S +   G E +T V V  + D +CG SR   FRGVAT+V KLFNIV+ D+AVFG+KD+QQ
Sbjct: 96  SIIYPKGMEAQTFVEVPLISDQLCGESRPGHFRGVATIVCKLFNIVQPDIAVFGQKDFQQ 155

Query: 65  WL 66
            L
Sbjct: 156 LL 157

BLAST of CsaV3_1G001100 vs. Swiss-Prot
Match: sp|B8EDX3|PANC_SHEB2 (Pantothenate synthetase OS=Shewanella baltica (strain OS223) OX=407976 GN=panC PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 8.1e-10
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 11  GSEDETSVRVKRLED-MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQWL 66
           G E +T V V  + D +CG SR   FRGVAT+V KLFNIV+ DVA+FG KDYQQ L
Sbjct: 102 GLEQQTYVEVPGISDVLCGASRPGHFRGVATIVCKLFNIVQPDVALFGNKDYQQLL 157

BLAST of CsaV3_1G001100 vs. TrEMBL
Match: tr|A0A0A0K7A9|A0A0A0K7A9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G061730 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0

Query: 9  ESGSEDETSVRVKRLE-DMCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQWLDY 68
          +SGSEDETSVRVKRLE DMC RSRLVFFRGVATVVTKLFNIVELDVAVF KKDYQQWLDY
Sbjct: 23 DSGSEDETSVRVKRLEKDMCWRSRLVFFRGVATVVTKLFNIVELDVAVFEKKDYQQWLDY 82

Query: 69 QAD 71
          QAD
Sbjct: 83 QAD 85

BLAST of CsaV3_1G001100 vs. TrEMBL
Match: tr|A0A0A0LBL8|A0A0A0LBL8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G625640 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.6e-18
Identity = 52/62 (83.87%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 4   VSCLEESGSEDETSVRVKRLE-DMCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQ 63
           VSCLEESGS  ET VRV+RLE  MCGRSR VFFRGVATVV KLFNIV+ DVAVFGKKDYQ
Sbjct: 294 VSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVAVFGKKDYQ 353

Query: 64  QW 65
           QW
Sbjct: 354 QW 355

BLAST of CsaV3_1G001100 vs. TrEMBL
Match: tr|A0A1S3CMZ3|A0A1S3CMZ3_CUCME (pantoate--beta-alanine ligase OS=Cucumis melo OX=3656 GN=LOC103502785 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.0e-18
Identity = 51/62 (82.26%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 4   VSCLEESGSEDETSVRVKRLE-DMCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQ 63
           VSCLEESGS  ET VRV+RLE  MCGRSR VFFRGVATVV KLFNIV+ DVA+FGKKDYQ
Sbjct: 122 VSCLEESGSSHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDYQ 181

Query: 64  QW 65
           QW
Sbjct: 182 QW 183

BLAST of CsaV3_1G001100 vs. TrEMBL
Match: tr|A0A0A0KJD2|A0A0A0KJD2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409330 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.8e-18
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 0

Query: 3   HVSCLEESGSEDETSVRVKRLE-DMCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDY 62
           +VSCLEESGS  ET VRV+RLE  MCGRSR VFFRGVATVV KLFNIV+ DVA+FGKKDY
Sbjct: 118 NVSCLEESGSGHETWVRVERLEKGMCGRSRPVFFRGVATVVAKLFNIVDPDVALFGKKDY 177

Query: 63  QQW 65
           QQW
Sbjct: 178 QQW 180

BLAST of CsaV3_1G001100 vs. TrEMBL
Match: tr|A0A2K2BNM5|A0A2K2BNM5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G240800v3 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 4   VSCLEESGSEDETSVRVKRLED-MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQ 63
           VSCLEESG   ET VRV++LE+ +CG+SR VFFRGVATVVTKLFNIVE DVAVFGKKDYQ
Sbjct: 132 VSCLEESGMGHETWVRVEKLENGLCGKSRPVFFRGVATVVTKLFNIVEPDVAVFGKKDYQ 191

Query: 64  QW 65
           QW
Sbjct: 192 QW 193

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN43706.11.6e-2293.65hypothetical protein Csa_7G061730 [Cucumis sativus][more]
XP_022931128.14.8e-1986.89pantoate--beta-alanine ligase-like [Cucurbita moschata][more]
XP_022996300.16.3e-1985.25pantoate--beta-alanine ligase-like [Cucurbita maxima][more]
XP_023533404.13.1e-1885.25pantoate--beta-alanine ligase-like [Cucurbita pepo subsp. pepo][more]
KGN58349.16.9e-1883.87hypothetical protein Csa_3G625640 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT5G48840.11.5e-1974.19homolog of bacterial PANC[more]
Match NameE-valueIdentityDescription
sp|Q9FKB3|PANC_ARATH2.8e-1874.19Pantoate--beta-alanine ligase OS=Arabidopsis thaliana OX=3702 GN=At5g48840 PE=1 ... [more]
sp|O24210|PANC_ORYSJ1.4e-1774.60Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica OX=39947 GN=PANC P... [more]
sp|O24035|PANC_LOTJA2.6e-1671.43Pantoate--beta-alanine ligase OS=Lotus japonicus OX=34305 GN=PANC PE=1 SV=3[more]
sp|B8CTC7|PANC_SHEPW6.2e-1054.84Pantothenate synthetase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) OX=... [more]
sp|B8EDX3|PANC_SHEB28.1e-1060.71Pantothenate synthetase OS=Shewanella baltica (strain OS223) OX=407976 GN=panC P... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0K7A9|A0A0A0K7A9_CUCSA1.1e-2293.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G061730 PE=4 SV=1[more]
tr|A0A0A0LBL8|A0A0A0LBL8_CUCSA4.6e-1883.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G625640 PE=3 SV=1[more]
tr|A0A1S3CMZ3|A0A1S3CMZ3_CUCME6.0e-1882.26pantoate--beta-alanine ligase OS=Cucumis melo OX=3656 GN=LOC103502785 PE=3 SV=1[more]
tr|A0A0A0KJD2|A0A0A0KJD2_CUCSA7.8e-1880.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409330 PE=4 SV=1[more]
tr|A0A2K2BNM5|A0A2K2BNM5_POPTR1.3e-1780.65Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G240800v3 PE=... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004592pantoate-beta-alanine ligase activity
Vocabulary: Biological Process
TermDefinition
GO:0015940pantothenate biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR014729Rossmann-like_a/b/a_fold
IPR003721Pantoate_ligase
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019482 beta-alanine metabolic process
biological_process GO:0015940 pantothenate biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004592 pantoate-beta-alanine ligase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G001100.1CsaV3_1G001100.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003721Pantoate-beta-alanine ligasePFAMPF02569Pantoate_ligasecoord: 16..64
e-value: 1.6E-16
score: 60.3
IPR003721Pantoate-beta-alanine ligasePANTHERPTHR21299:SF1PANTOATE--BETA-ALANINE LIGASEcoord: 10..65
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3DG3DSA:3.40.50.620coord: 3..68
e-value: 3.0E-18
score: 67.7
NoneNo IPR availablePANTHERPTHR21299CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASEcoord: 10..65
NoneNo IPR availableSUPERFAMILYSSF52374Nucleotidylyl transferasecoord: 23..65

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G001100CsGy1G001060Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G001100Silver-seed gourdcarcucB0395
CsaV3_1G001100Silver-seed gourdcarcucB0398
CsaV3_1G001100Silver-seed gourdcarcucB0466
CsaV3_1G001100Silver-seed gourdcarcucB1095
CsaV3_1G001100Melon (DHL92) v3.5.1cucmeB053
CsaV3_1G001100Cucumber (Gy14) v2cgybcucB106
CsaV3_1G001100Cucumber (Gy14) v1cgycucB314
CsaV3_1G001100Cucumber (Gy14) v1cgycucB520
CsaV3_1G001100Cucurbita maxima (Rimu)cmacucB0058
CsaV3_1G001100Cucurbita maxima (Rimu)cmacucB0100
CsaV3_1G001100Cucurbita maxima (Rimu)cmacucB0117
CsaV3_1G001100Cucurbita maxima (Rimu)cmacucB0126
CsaV3_1G001100Cucurbita moschata (Rifu)cmocucB0044
CsaV3_1G001100Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G001100Cucurbita moschata (Rifu)cmocucB0094
CsaV3_1G001100Cucurbita moschata (Rifu)cmocucB0261
CsaV3_1G001100Cucurbita moschata (Rifu)cmocucB0801
CsaV3_1G001100Cucurbita pepo (Zucchini)cpecucB0441
CsaV3_1G001100Cucurbita pepo (Zucchini)cpecucB0442
CsaV3_1G001100Cucurbita pepo (Zucchini)cpecucB0473
CsaV3_1G001100Cucurbita pepo (Zucchini)cpecucB0739
CsaV3_1G001100Cucurbita pepo (Zucchini)cpecucB0804
CsaV3_1G001100Cucurbita pepo (Zucchini)cpecucB0805
CsaV3_1G001100Cucurbita pepo (Zucchini)cpecucB0814
CsaV3_1G001100Wild cucumber (PI 183967)cpicucB001
CsaV3_1G001100Wild cucumber (PI 183967)cpicucB131
CsaV3_1G001100Bottle gourd (USVL1VR-Ls)cuclsiB049
CsaV3_1G001100Bottle gourd (USVL1VR-Ls)cuclsiB081
CsaV3_1G001100Melon (DHL92) v3.6.1cucmedB050
CsaV3_1G001100Watermelon (Charleston Gray)cucwcgB002
CsaV3_1G001100Watermelon (Charleston Gray)cucwcgB006
CsaV3_1G001100Watermelon (Charleston Gray)cucwcgB082
CsaV3_1G001100Watermelon (Charleston Gray)cucwcgB088
CsaV3_1G001100Watermelon (Charleston Gray)cucwcgB100
CsaV3_1G001100Watermelon (97103) v1cucwmB003
CsaV3_1G001100Watermelon (97103) v1cucwmB007
CsaV3_1G001100Watermelon (97103) v1cucwmB103
CsaV3_1G001100Watermelon (97103) v1cucwmB105
CsaV3_1G001100Watermelon (97103) v2cucwmbB070
CsaV3_1G001100Watermelon (97103) v2cucwmbB076
CsaV3_1G001100Watermelon (97103) v2cucwmbB093
CsaV3_1G001100Wax gourdcucwgoB009
CsaV3_1G001100Wax gourdcucwgoB123