CsGy1G001060 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G001060
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionPantothenate synthetase
LocationChr1 : 599927 .. 600647 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCATTTTCTCACTTCCAAAAATAATATTTCATTTTTCTCTCATCTCTCCCTATGCGTATTCCGTTTTTCTTCATTTTCACAAAACCTTTGATTTCCTTTTTCTTCCTTTCCCATTTTTCATTCACAAAACTACAAAAACAATGGTAGTTCCGGTGATTTCATTGTGGAACATGACTTGGGACTCGTGATCTTGCTACGAAAATTGGATTCCGGCGAGGAGGTGTATGGAGTTAAATCAGCTATGGAGTTGATGTTGTTTTTCATCCTCACAATCTCTACGACTATGGAGTTAAATTAGCTATGGATTGTCCTAGAATGTCCATGTTTCTTGCTTGGAGGAATCCGGTTCAGAGGATGAGACATCAGTGAGGGTTAAGCGTTTGGAGGACATGTGTGGGAGAAGTAGACTTGTGTTCTTTAGAGGGGTTGCTACTGTTGTTACTAAGTTGTTCAATATTGTGGAACTCGATGTTGCAGTGTTTGGAAAGAAGGATTATCAGCAATGGCTAGATTATCAGGCGGATGGTGAGTCTTTGTAAGAATGTGAATGATTTAGATTTTCATATTTGTTTTGAGCTCAAAATTTATCGGATTTCTCCATAGATTTTTTTCCTCATTTTTATTGCTTATATGTTACTTATATATACCAGGTAGGAAATTTGGCTCTTCTAGTTGAAGATTGGACAACTAGTGGAAAGCAAGTATCAAACAACGCTTGA

mRNA sequence

CTCCATTTTCTCACTTCCAAAAATAATATTTCATTTTTCTCTCATCTCTCCCTATGCGTATTCCGTTTTTCTTCATTTTCACAAAACCTTTGATTTCCTTTTTCTTCCTTTCCCATTTTTCATTCACAAAACTACAAAAACAATGGTAGTTCCGGTGATTTCATTGTGGAACATGACTTGGGACTCGTGATCTTGCTACGAAAATTGGATTCCGGCGAGGAGGTGTATGGAGTTAAATCAGCTATGGAGTTGATGTTGTTTTTCATCCTCACAATCTCTACGACTATGGAGTTAAATTAGCTATGGATTGTCCTAGAATGTCCATGTTTCTTGCTTGGAGGAATCCGGTTCAGAGGATGAGACATCAGTGAGGGTTAAGCGTTTGGAGGACATGTGTGGGAGAAGTAGACTTGTGTTCTTTAGAGGGGTTGCTACTGTTGTTACTAAGTTGTTCAATATTGTGGAACTCGATGTTGCAGTGTTTGGAAAGAAGGATTATCAGCAATGGCTAGATTATCAGGCGGATGGAAATTTGGCTCTTCTAGTTGAAGATTGGACAACTAGTGGAAAGCAAGTATCAAACAACGCTTGA

Coding sequence (CDS)

ATGTGTGGGAGAAGTAGACTTGTGTTCTTTAGAGGGGTTGCTACTGTTGTTACTAAGTTGTTCAATATTGTGGAACTCGATGTTGCAGTGTTTGGAAAGAAGGATTATCAGCAATGGCTAGATTATCAGGCGGATGGAAATTTGGCTCTTCTAGTTGAAGATTGGACAACTAGTGGAAAGCAAGTATCAAACAACGCTTGA

Protein sequence

MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQWLDYQADGNLALLVEDWTTSGKQVSNNA
Homology
[Close]
BLAST of CsGy1G001060 vs. NCBI nr
Match: KGN43706.1 (hypothetical protein Csa_7G061730 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 1  MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQWLDYQADG 47
          MC RSRLVFFRGVATVVTKLFNIVELDVAVF KKDYQQWLDYQADG
Sbjct: 41 MCWRSRLVFFRGVATVVTKLFNIVELDVAVFEKKDYQQWLDYQADG 86

[Close]
BLAST of CsGy1G001060 vs. NCBI nr
Match: XP_022931128.1 (pantoate--beta-alanine ligase-like [Cucurbita moschata])

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-11
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           MCGRSR VFFRGVAT+VTKLFNIVE DVAVFGKKDYQQW
Sbjct: 151 MCGRSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDYQQW 189

[Close]
BLAST of CsGy1G001060 vs. NCBI nr
Match: XP_022996300.1 (pantoate--beta-alanine ligase-like [Cucurbita maxima])

HSP 1 Score: 76.6 bits (187), Expect = 3.4e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           MCGRSR VFFRGVAT+VTKLFN+VE DVAVFGKKDYQQW
Sbjct: 151 MCGRSRPVFFRGVATIVTKLFNVVEPDVAVFGKKDYQQW 189

[Close]
BLAST of CsGy1G001060 vs. NCBI nr
Match: XP_018821613.1 (PREDICTED: pantoate--beta-alanine ligase [Juglans regia])

HSP 1 Score: 76.3 bits (186), Expect = 4.5e-11
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           MCG+SR VFFRGVATVVTKLFNIVE DVAVFGKKDYQQW
Sbjct: 163 MCGKSRPVFFRGVATVVTKLFNIVEPDVAVFGKKDYQQW 201

[Close]
BLAST of CsGy1G001060 vs. NCBI nr
Match: OVA03201.1 (Pantoate-beta-alanine ligase [Macleaya cordata])

HSP 1 Score: 76.3 bits (186), Expect = 4.5e-11
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           MCG+SR VFFRGVATVVTKLFNIVE DVAVFGKKDYQQW
Sbjct: 153 MCGKSRPVFFRGVATVVTKLFNIVEPDVAVFGKKDYQQW 191

[Close]
BLAST of CsGy1G001060 vs. TAIR10
Match: AT5G48840.1 (homolog of bacterial PANC)

HSP 1 Score: 72.8 bits (177), Expect = 9.0e-14
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 2   CGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           CG+SR VFFRGVAT+VTKLFNIVE DVA+FGKKDYQQW
Sbjct: 145 CGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQQW 182

[Close]
BLAST of CsGy1G001060 vs. Swiss-Prot
Match: sp|O24035|PANC_LOTJA (Pantoate--beta-alanine ligase OS=Lotus japonicus OX=34305 GN=PANC PE=1 SV=3)

HSP 1 Score: 74.7 bits (182), Expect = 4.3e-13
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           +CG+SR VFFRGVAT+VTKLFNIVE DVAVFGKKDYQQW
Sbjct: 144 LCGKSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDYQQW 182

[Close]
BLAST of CsGy1G001060 vs. Swiss-Prot
Match: sp|Q9FKB3|PANC_ARATH (Pantoate--beta-alanine ligase OS=Arabidopsis thaliana OX=3702 GN=At5g48840 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-12
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0 

Query: 2   CGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           CG+SR VFFRGVAT+VTKLFNIVE DVA+FGKKDYQQW
Sbjct: 145 CGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQQW 182

[Close]
BLAST of CsGy1G001060 vs. Swiss-Prot
Match: sp|O24210|PANC_ORYSJ (Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica OX=39947 GN=PANC PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-12
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           MCG SR VFFRGVAT+V+KLFNI+E DVAVFGKKDYQQW
Sbjct: 147 MCGASRPVFFRGVATIVSKLFNIIEPDVAVFGKKDYQQW 185

[Close]
BLAST of CsGy1G001060 vs. Swiss-Prot
Match: sp|A0LF67|PANC_SYNFM (Pantothenate synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) OX=335543 GN=panC PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.9e-09
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 0 

Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQ 39
           +CGRSR +FFRGVATVV KLF+IV+  VAVFG+KDYQQ
Sbjct: 116 LCGRSRPLFFRGVATVVVKLFHIVKPHVAVFGEKDYQQ 153

[Close]
BLAST of CsGy1G001060 vs. Swiss-Prot
Match: sp|C0QHN3|PANC_DESAH (Pantothenate synthetase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) OX=177437 GN=panC PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-08
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQ 39
           +CG SR V F+GVATVVTKLFNIV  DVAVFG KD+QQ
Sbjct: 116 LCGLSRPVHFQGVATVVTKLFNIVGPDVAVFGSKDFQQ 153

[Close]
BLAST of CsGy1G001060 vs. TrEMBL
Match: tr|A0A0A0K7A9|A0A0A0K7A9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G061730 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.9e-16
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 1  MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQWLDYQADG 47
          MC RSRLVFFRGVATVVTKLFNIVELDVAVF KKDYQQWLDYQADG
Sbjct: 41 MCWRSRLVFFRGVATVVTKLFNIVELDVAVFEKKDYQQWLDYQADG 86

[Close]
BLAST of CsGy1G001060 vs. TrEMBL
Match: tr|A0A200PYC7|A0A200PYC7_9MAGN (Pantoate-beta-alanine ligase OS=Macleaya cordata OX=56857 GN=BVC80_8891g4 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-11
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           MCG+SR VFFRGVATVVTKLFNIVE DVAVFGKKDYQQW
Sbjct: 153 MCGKSRPVFFRGVATVVTKLFNIVEPDVAVFGKKDYQQW 191

[Close]
BLAST of CsGy1G001060 vs. TrEMBL
Match: tr|A0A2I4EQE2|A0A2I4EQE2_9ROSI (pantoate--beta-alanine ligase OS=Juglans regia OX=51240 GN=LOC108991706 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-11
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           MCG+SR VFFRGVATVVTKLFNIVE DVAVFGKKDYQQW
Sbjct: 163 MCGKSRPVFFRGVATVVTKLFNIVEPDVAVFGKKDYQQW 201

[Close]
BLAST of CsGy1G001060 vs. TrEMBL
Match: tr|A0A2P4JMU1|A0A2P4JMU1_QUESU (Pantoate--beta-alanine ligase OS=Quercus suber OX=58331 GN=CFP56_41846 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-11
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           MCG+SR VFFRGVATVVTKLFNIVE DVAVFGKKDYQQW
Sbjct: 162 MCGKSRPVFFRGVATVVTKLFNIVEPDVAVFGKKDYQQW 200

[Close]
BLAST of CsGy1G001060 vs. TrEMBL
Match: tr|A0A2G5CY44|A0A2G5CY44_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03400242v1 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.9e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           MCG+SR VFFRGVATVVTKLFNIVE D+AVFGKKDYQQW
Sbjct: 153 MCGKSRPVFFRGVATVVTKLFNIVEPDIAVFGKKDYQQW 191

The following BLAST results are available for this feature:
BLAST of CsGy1G001060 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43706.11.3e-1595.65hypothetical protein Csa_7G061730 [Cucumis sativus][more]
XP_022931128.12.6e-1192.31pantoate--beta-alanine ligase-like [Cucurbita moschata][more]
XP_022996300.13.4e-1189.74pantoate--beta-alanine ligase-like [Cucurbita maxima][more]
XP_018821613.14.5e-1192.31PREDICTED: pantoate--beta-alanine ligase [Juglans regia][more]
OVA03201.14.5e-1192.31Pantoate-beta-alanine ligase [Macleaya cordata][more]
BLAST of CsGy1G001060 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48840.19.0e-1486.84homolog of bacterial PANC[more]
BLAST of CsGy1G001060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O24035|PANC_LOTJA4.3e-1387.18Pantoate--beta-alanine ligase OS=Lotus japonicus OX=34305 GN=PANC PE=1 SV=3[more]
sp|Q9FKB3|PANC_ARATH1.6e-1286.84Pantoate--beta-alanine ligase OS=Arabidopsis thaliana OX=3702 GN=At5g48840 PE=1 ... [more]
sp|O24210|PANC_ORYSJ1.6e-1284.62Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica OX=39947 GN=PANC P... [more]
sp|A0LF67|PANC_SYNFM4.9e-0976.32Pantothenate synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB... [more]
sp|C0QHN3|PANC_DESAH2.4e-0876.32Pantothenate synthetase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / D... [more]
BLAST of CsGy1G001060 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K7A9|A0A0A0K7A9_CUCSA8.9e-1695.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G061730 PE=4 SV=1[more]
tr|A0A200PYC7|A0A200PYC7_9MAGN3.0e-1192.31Pantoate-beta-alanine ligase OS=Macleaya cordata OX=56857 GN=BVC80_8891g4 PE=3 S... [more]
tr|A0A2I4EQE2|A0A2I4EQE2_9ROSI3.0e-1192.31pantoate--beta-alanine ligase OS=Juglans regia OX=51240 GN=LOC108991706 PE=3 SV=... [more]
tr|A0A2P4JMU1|A0A2P4JMU1_QUESU3.0e-1192.31Pantoate--beta-alanine ligase OS=Quercus suber OX=58331 GN=CFP56_41846 PE=3 SV=1[more]
tr|A0A2G5CY44|A0A2G5CY44_AQUCA3.9e-1189.74Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03400242v1 PE=4... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015940pantothenate biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0004592pantoate-beta-alanine ligase activity
Vocabulary: INTERPRO
TermDefinition
IPR014729Rossmann-like_a/b/a_fold
IPR003721Pantoate_ligase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015940 pantothenate biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004592 pantoate-beta-alanine ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G001060.1CsGy1G001060.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003721Pantoate-beta-alanine ligasePFAMPF02569Pantoate_ligasecoord: 1..39
e-value: 4.6E-15
score: 55.4
IPR003721Pantoate-beta-alanine ligasePANTHERPTHR21299:SF1PANTOATE--BETA-ALANINE LIGASEcoord: 1..40
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3DG3DSA:3.40.50.620coord: 1..49
e-value: 4.6E-16
score: 60.6
NoneNo IPR availablePANTHERPTHR21299CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASEcoord: 1..40
NoneNo IPR availableSUPERFAMILYSSF52374Nucleotidylyl transferasecoord: 1..40

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G001060CsaV3_1G001100Cucumber (Chinese Long) v3cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G001060Cucurbita pepo (Zucchini)cgybcpeB052
CsGy1G001060Cucurbita pepo (Zucchini)cgybcpeB053
CsGy1G001060Cucurbita pepo (Zucchini)cgybcpeB062
CsGy1G001060Cucurbita pepo (Zucchini)cgybcpeB106
CsGy1G001060Cucurbita pepo (Zucchini)cgybcpeB117
CsGy1G001060Cucurbita pepo (Zucchini)cgybcpeB118
CsGy1G001060Cucurbita pepo (Zucchini)cgybcpeB126
CsGy1G001060Cucumber (Chinese Long) v2cgybcuB001
CsGy1G001060Bottle gourd (USVL1VR-Ls)cgyblsiB067
CsGy1G001060Melon (DHL92) v3.5.1cgybmeB048
CsGy1G001060Watermelon (Charleston Gray)cgybwcgB002
CsGy1G001060Watermelon (Charleston Gray)cgybwcgB070
CsGy1G001060Watermelon (Charleston Gray)cgybwcgB078
CsGy1G001060Watermelon (Charleston Gray)cgybwcgB086
CsGy1G001060Watermelon (97103) v1cgybwmB003
CsGy1G001060Watermelon (97103) v1cgybwmB092
CsGy1G001060Watermelon (97103) v1cgybwmB094
CsGy1G001060Wild cucumber (PI 183967)cgybcpiB001
CsGy1G001060Wild cucumber (PI 183967)cgybcpiB033
CsGy1G001060Silver-seed gourdcarcgybB0371
CsGy1G001060Silver-seed gourdcarcgybB0374
CsGy1G001060Silver-seed gourdcarcgybB0442
CsGy1G001060Silver-seed gourdcarcgybB1031
CsGy1G001060Watermelon (97103) v2cgybwmbB076
CsGy1G001060Watermelon (97103) v2cgybwmbB072
CsGy1G001060Watermelon (97103) v2cgybwmbB087
CsGy1G001060Wax gourdcgybwgoB008
CsGy1G001060Wax gourdcgybwgoB114
CsGy1G001060Melon (DHL92) v3.6.1cgybmedB043
CsGy1G001060Cucumber (Gy14) v2cgybcgybB005
CsGy1G001060Cucurbita maxima (Rimu)cgybcmaB004
CsGy1G001060Cucurbita maxima (Rimu)cgybcmaB028
CsGy1G001060Cucurbita maxima (Rimu)cgybcmaB045
CsGy1G001060Cucurbita maxima (Rimu)cgybcmaB052
CsGy1G001060Cucurbita maxima (Rimu)cgybcmaB082
CsGy1G001060Cucurbita moschata (Rifu)cgybcmoB005
CsGy1G001060Cucurbita moschata (Rifu)cgybcmoB028
CsGy1G001060Cucurbita moschata (Rifu)cgybcmoB032
CsGy1G001060Cucurbita moschata (Rifu)cgybcmoB078
CsGy1G001060Cucurbita moschata (Rifu)cgybcmoB121