CsGy1G001060.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G001060.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Pantothenate synthetase
Location	Chr1 : 599927 .. 600647 (-)
Sequence length	592

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCATTTTCTCACTTCCAAAAATAATATTTCATTTTTCTCTCATCTCTCCCTATGCGTATTCCGTTTTTCTTCATTTTCACAAAACCTTTGATTTCCTTTTTCTTCCTTTCCCATTTTTCATTCACAAAACTACAAAAACAATGGTAGTTCCGGTGATTTCATTGTGGAACATGACTTGGGACTCGTGATCTTGCTACGAAAATTGGATTCCGGCGAGGAGGTGTATGGAGTTAAATCAGCTATGGAGTTGATGTTGTTTTTCATCCTCACAATCTCTACGACTATGGAGTTAAATTAGCTATGGATTGTCCTAGAATGTCCATGTTTCTTGCTTGGAGGAATCCGGTTCAGAGGATGAGACATCAGTGAGGGTTAAGCGTTTGGAGGACATGTGTGGGAGAAGTAGACTTGTGTTCTTTAGAGGGGTTGCTACTGTTGTTACTAAGTTGTTCAATATTGTGGAACTCGATGTTGCAGTGTTTGGAAAGAAGGATTATCAGCAATGGCTAGATTATCAGGCGGATGGTGAGTCTTTGTAAGAATGTGAATGATTTAGATTTTCATATTTGTTTTGAGCTCAAAATTTATCGGATTTCTCCATAGATTTTTTTCCTCATTTTTATTGCTTATATGTTACTTATATATACCAGGTAGGAAATTTGGCTCTTCTAGTTGAAGATTGGACAACTAGTGGAAAGCAAGTATCAAACAACGCTTGA

mRNA sequence

CTCCATTTTCTCACTTCCAAAAATAATATTTCATTTTTCTCTCATCTCTCCCTATGCGTATTCCGTTTTTCTTCATTTTCACAAAACCTTTGATTTCCTTTTTCTTCCTTTCCCATTTTTCATTCACAAAACTACAAAAACAATGGTAGTTCCGGTGATTTCATTGTGGAACATGACTTGGGACTCGTGATCTTGCTACGAAAATTGGATTCCGGCGAGGAGGTGTATGGAGTTAAATCAGCTATGGAGTTGATGTTGTTTTTCATCCTCACAATCTCTACGACTATGGAGTTAAATTAGCTATGGATTGTCCTAGAATGTCCATGTTTCTTGCTTGGAGGAATCCGGTTCAGAGGATGAGACATCAGTGAGGGTTAAGCGTTTGGAGGACATGTGTGGGAGAAGTAGACTTGTGTTCTTTAGAGGGGTTGCTACTGTTGTTACTAAGTTGTTCAATATTGTGGAACTCGATGTTGCAGTGTTTGGAAAGAAGGATTATCAGCAATGGCTAGATTATCAGGCGGATGGAAATTTGGCTCTTCTAGTTGAAGATTGGACAACTAGTGGAAAGCAAGTATCAAACAACGCTTGA

Coding sequence (CDS)

ATGTGTGGGAGAAGTAGACTTGTGTTCTTTAGAGGGGTTGCTACTGTTGTTACTAAGTTGTTCAATATTGTGGAACTCGATGTTGCAGTGTTTGGAAAGAAGGATTATCAGCAATGGCTAGATTATCAGGCGGATGGAAATTTGGCTCTTCTAGTTGAAGATTGGACAACTAGTGGAAAGCAAGTATCAAACAACGCTTGA

Protein sequence

MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQWLDYQADGNLALLVEDWTTSGKQVSNNA

Homology

[Close]

BLAST of CsGy1G001060.1 vs. NCBI nr
Match: KGN43706.1 (hypothetical protein Csa_7G061730 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQWLDYQADG 47
          MC RSRLVFFRGVATVVTKLFNIVELDVAVF KKDYQQWLDYQADG
Sbjct: 41 MCWRSRLVFFRGVATVVTKLFNIVELDVAVFEKKDYQQWLDYQADG 86

[Close]

BLAST of CsGy1G001060.1 vs. NCBI nr
Match: XP_022931128.1 (pantoate--beta-alanine ligase-like [Cucurbita moschata])

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-11
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           MCGRSR VFFRGVAT+VTKLFNIVE DVAVFGKKDYQQW
Sbjct: 151 MCGRSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDYQQW 189

[Close]

BLAST of CsGy1G001060.1 vs. NCBI nr
Match: XP_022996300.1 (pantoate--beta-alanine ligase-like [Cucurbita maxima])

HSP 1 Score: 76.6 bits (187), Expect = 3.4e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           MCGRSR VFFRGVAT+VTKLFN+VE DVAVFGKKDYQQW
Sbjct: 151 MCGRSRPVFFRGVATIVTKLFNVVEPDVAVFGKKDYQQW 189

[Close]

BLAST of CsGy1G001060.1 vs. NCBI nr
Match: XP_018821613.1 (PREDICTED: pantoate--beta-alanine ligase [Juglans regia])

HSP 1 Score: 76.3 bits (186), Expect = 4.5e-11
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           MCG+SR VFFRGVATVVTKLFNIVE DVAVFGKKDYQQW
Sbjct: 163 MCGKSRPVFFRGVATVVTKLFNIVEPDVAVFGKKDYQQW 201

[Close]

BLAST of CsGy1G001060.1 vs. NCBI nr
Match: OVA03201.1 (Pantoate-beta-alanine ligase [Macleaya cordata])

HSP 1 Score: 76.3 bits (186), Expect = 4.5e-11
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           MCG+SR VFFRGVATVVTKLFNIVE DVAVFGKKDYQQW
Sbjct: 153 MCGKSRPVFFRGVATVVTKLFNIVEPDVAVFGKKDYQQW 191

[Close]

BLAST of CsGy1G001060.1 vs. TAIR10
Match: AT5G48840.1 (homolog of bacterial PANC)

HSP 1 Score: 72.8 bits (177), Expect = 9.0e-14
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 2   CGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           CG+SR VFFRGVAT+VTKLFNIVE DVA+FGKKDYQQW
Sbjct: 145 CGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQQW 182

[Close]

BLAST of CsGy1G001060.1 vs. Swiss-Prot
Match: sp|O24035|PANC_LOTJA (Pantoate--beta-alanine ligase OS=Lotus japonicus OX=34305 GN=PANC PE=1 SV=3)

HSP 1 Score: 74.7 bits (182), Expect = 4.3e-13
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           +CG+SR VFFRGVAT+VTKLFNIVE DVAVFGKKDYQQW
Sbjct: 144 LCGKSRPVFFRGVATIVTKLFNIVEPDVAVFGKKDYQQW 182

[Close]

BLAST of CsGy1G001060.1 vs. Swiss-Prot
Match: sp|Q9FKB3|PANC_ARATH (Pantoate--beta-alanine ligase OS=Arabidopsis thaliana OX=3702 GN=At5g48840 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-12
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 2   CGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           CG+SR VFFRGVAT+VTKLFNIVE DVA+FGKKDYQQW
Sbjct: 145 CGKSRPVFFRGVATIVTKLFNIVEPDVALFGKKDYQQW 182

[Close]

BLAST of CsGy1G001060.1 vs. Swiss-Prot
Match: sp|O24210|PANC_ORYSJ (Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica OX=39947 GN=PANC PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-12
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           MCG SR VFFRGVAT+V+KLFNI+E DVAVFGKKDYQQW
Sbjct: 147 MCGASRPVFFRGVATIVSKLFNIIEPDVAVFGKKDYQQW 185

[Close]

BLAST of CsGy1G001060.1 vs. Swiss-Prot
Match: sp|A0LF67|PANC_SYNFM (Pantothenate synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) OX=335543 GN=panC PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.9e-09
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQ 39
           +CGRSR +FFRGVATVV KLF+IV+  VAVFG+KDYQQ
Sbjct: 116 LCGRSRPLFFRGVATVVVKLFHIVKPHVAVFGEKDYQQ 153

[Close]

BLAST of CsGy1G001060.1 vs. Swiss-Prot
Match: sp|C0QHN3|PANC_DESAH (Pantothenate synthetase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) OX=177437 GN=panC PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-08
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQ 39
           +CG SR V F+GVATVVTKLFNIV  DVAVFG KD+QQ
Sbjct: 116 LCGLSRPVHFQGVATVVTKLFNIVGPDVAVFGSKDFQQ 153

[Close]

BLAST of CsGy1G001060.1 vs. TrEMBL
Match: tr|A0A0A0K7A9|A0A0A0K7A9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G061730 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.9e-16
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQWLDYQADG 47
          MC RSRLVFFRGVATVVTKLFNIVELDVAVF KKDYQQWLDYQADG
Sbjct: 41 MCWRSRLVFFRGVATVVTKLFNIVELDVAVFEKKDYQQWLDYQADG 86

[Close]

BLAST of CsGy1G001060.1 vs. TrEMBL
Match: tr|A0A200PYC7|A0A200PYC7_9MAGN (Pantoate-beta-alanine ligase OS=Macleaya cordata OX=56857 GN=BVC80_8891g4 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-11
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           MCG+SR VFFRGVATVVTKLFNIVE DVAVFGKKDYQQW
Sbjct: 153 MCGKSRPVFFRGVATVVTKLFNIVEPDVAVFGKKDYQQW 191

[Close]

BLAST of CsGy1G001060.1 vs. TrEMBL
Match: tr|A0A2I4EQE2|A0A2I4EQE2_9ROSI (pantoate--beta-alanine ligase OS=Juglans regia OX=51240 GN=LOC108991706 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-11
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           MCG+SR VFFRGVATVVTKLFNIVE DVAVFGKKDYQQW
Sbjct: 163 MCGKSRPVFFRGVATVVTKLFNIVEPDVAVFGKKDYQQW 201

[Close]

BLAST of CsGy1G001060.1 vs. TrEMBL
Match: tr|A0A2P4JMU1|A0A2P4JMU1_QUESU (Pantoate--beta-alanine ligase OS=Quercus suber OX=58331 GN=CFP56_41846 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-11
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           MCG+SR VFFRGVATVVTKLFNIVE DVAVFGKKDYQQW
Sbjct: 162 MCGKSRPVFFRGVATVVTKLFNIVEPDVAVFGKKDYQQW 200

[Close]

BLAST of CsGy1G001060.1 vs. TrEMBL
Match: tr|A0A2G5CY44|A0A2G5CY44_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03400242v1 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.9e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1   MCGRSRLVFFRGVATVVTKLFNIVELDVAVFGKKDYQQW 40
           MCG+SR VFFRGVATVVTKLFNIVE D+AVFGKKDYQQW
Sbjct: 153 MCGKSRPVFFRGVATVVTKLFNIVEPDIAVFGKKDYQQW 191

The following BLAST results are available for this feature:

BLAST of CsGy1G001060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43706.1	1.3e-15	95.65	hypothetical protein Csa_7G061730 [Cucumis sativus]	[more]
XP_022931128.1	2.6e-11	92.31	pantoate--beta-alanine ligase-like [Cucurbita moschata]	[more]
XP_022996300.1	3.4e-11	89.74	pantoate--beta-alanine ligase-like [Cucurbita maxima]	[more]
XP_018821613.1	4.5e-11	92.31	PREDICTED: pantoate--beta-alanine ligase [Juglans regia]	[more]
OVA03201.1	4.5e-11	92.31	Pantoate-beta-alanine ligase [Macleaya cordata]	[more]

BLAST of CsGy1G001060.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48840.1	9.0e-14	86.84	homolog of bacterial PANC	[more]

BLAST of CsGy1G001060.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O24035\|PANC_LOTJA	4.3e-13	87.18	Pantoate--beta-alanine ligase OS=Lotus japonicus OX=34305 GN=PANC PE=1 SV=3	[more]
sp\|Q9FKB3\|PANC_ARATH	1.6e-12	86.84	Pantoate--beta-alanine ligase OS=Arabidopsis thaliana OX=3702 GN=At5g48840 PE=1 ...	[more]
sp\|O24210\|PANC_ORYSJ	1.6e-12	84.62	Pantoate--beta-alanine ligase OS=Oryza sativa subsp. japonica OX=39947 GN=PANC P...	[more]
sp\|A0LF67\|PANC_SYNFM	4.9e-09	76.32	Pantothenate synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB...	[more]
sp\|C0QHN3\|PANC_DESAH	2.4e-08	76.32	Pantothenate synthetase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / D...	[more]

BLAST of CsGy1G001060.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K7A9\|A0A0A0K7A9_CUCSA	8.9e-16	95.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G061730 PE=4 SV=1	[more]
tr\|A0A200PYC7\|A0A200PYC7_9MAGN	3.0e-11	92.31	Pantoate-beta-alanine ligase OS=Macleaya cordata OX=56857 GN=BVC80_8891g4 PE=3 S...	[more]
tr\|A0A2I4EQE2\|A0A2I4EQE2_9ROSI	3.0e-11	92.31	pantoate--beta-alanine ligase OS=Juglans regia OX=51240 GN=LOC108991706 PE=3 SV=...	[more]
tr\|A0A2P4JMU1\|A0A2P4JMU1_QUESU	3.0e-11	92.31	Pantoate--beta-alanine ligase OS=Quercus suber OX=58331 GN=CFP56_41846 PE=3 SV=1	[more]
tr\|A0A2G5CY44\|A0A2G5CY44_AQUCA	3.9e-11	89.74	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03400242v1 PE=4...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0015940	pantothenate biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0004592	pantoate-beta-alanine ligase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR014729	Rossmann-like_a/b/a_fold
IPR003721	Pantoate_ligase

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015940	pantothenate biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004592	pantoate-beta-alanine ligase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G001060	CsGy1G001060	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G001060.1.five_prime_UTR.1	CsGy1G001060.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G001060.1.exon.2	CsGy1G001060.1.exon.2	exon
CsGy1G001060.1.exon.1	CsGy1G001060.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G001060.1.CDS.2	CsGy1G001060.1.CDS.2	CDS
CsGy1G001060.1.CDS.1	CsGy1G001060.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G001060.1	CsGy1G001060.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003721	Pantoate-beta-alanine ligase	PFAM	PF02569	Pantoate_ligase	coord: 1..39 e-value: 4.6E-15 score: 55.4
IPR003721	Pantoate-beta-alanine ligase	PANTHER	PTHR21299:SF1	PANTOATE--BETA-ALANINE LIGASE	coord: 1..40
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	G3DSA:3.40.50.620		coord: 1..49 e-value: 4.6E-16 score: 60.6
None	No IPR available	PANTHER	PTHR21299	CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE	coord: 1..40
None	No IPR available	SUPERFAMILY	SSF52374	Nucleotidylyl transferase	coord: 1..40