Csa7G433390 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G433390
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionHistone H2A; contains IPR009072 (Histone-fold)
LocationChr7 : 17411773 .. 17415727 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGAGAGAGAAAGGGTTGTGGGCATTACTTTTATGTGCCTCGCTTCCCGTCGTTCCTTATCGGTTCTCTTTCCTTTCTCTTCCAAACAATCTTCCAATACTCCTTCTTCCACTCCAACAGAAGAGCAACCCTATTTTCTTTTGCCTCCAAAATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCGCCAACAACAAGGACAAGGATAAAAAGAAACCCGTCTCTCGCTCTTCCCGCGCTGGTCTTCAGGTCTCCTTCTTTCCTTTTTACTCTTCTTCACTTGTTTTTCCGCTTTCCTTTTCTGGGTCCTCTCTGGATCTGTGTTTCTTTTGCTTCTTTCAGGTTTATGCCTCTTTTTCTCCAACAAACCCACGATTTTTTTTAAAATTTAGATTCGTTTTTTGTGTTTGGACATTGGGTGTTGGGGATGTGGGGGTAATTTAAATTACGTCTTTGAGTGTTTATATTTGTTTATTACAGATGGGTCCTCTTTCTGTTTCCTTGTTTCTTGTTCTTTCGTTTCTCTTCGAGGGTTTTGGTGGTTTCTAAGTTTGTTTGTTTCGTTGTGGGTTCTGCTCTGTATGAGATCGAGTGGTGATGAATATTTAGGAGGTGTTCGTTTGTGAATCTTTGGAGGGGTAGCTCTAAGTTATTCTCTTTAATCTTAGAAGTAGATGCATGTATTTGGGTCTGTTCTATTTTTAATGTGTTGCTATGATCCTCCTTTAAGCAGGTCTGTGATTCTTTTGTGAGTCTCGGTTTGTTAATGTTCTTCGTGGTTGGAGAAATAGATTATTTTGTTGAGGTAATGTATTGGGTAGAAAGAAAGAACCATGTTAGACTTAGCTTAGGCTGATATGGTTTTACTTATAATTTCCCAATTAAGGTTGGCACCAGTGTGTGAAGCATGCATCCAAGATCAGTTTTTCGTGCTATAGAAGTTGTCTGTCAAAAGATGTTAGTGAAGGTGAATTGGGATTTGACCATTTTTATGTCTAGATATTTCCCAATCACAATTCAATGGTTCCCAGTTCTTGAGGCATTTAGATAGATAACTTATTCGTTTACATGTTGCGAAGTCTCTTCCCTATTGTTAGAGTGACAGAAACTAGGACATTGATCCAATAGTTGTATTAGAAACTTTAAAACATTAAGTACCTACATCATCCTAAGTAGTTCGAGTAACTAAGGACAATGCTTAACCACCGTATACATAGGTATATTTAACGTTTATCTTGTGTGATAGGTAATACATATTATACTCAAGGTGGGTTTGACCACTAGATTCTCATGTTGATAAATTTTAAAAACATTTATGGAGTGGCAATAAGTTTTTCTCCCATCTCTTCCTTTTCCACTCTTTCTTTTTGTAACAAAATTCAAGTCACTCCTCAAGTCCATGGGCACACTCCTAGATATTTGATACCTGGTTGACTGTAGCTAATAACCTGTCACAAATAAAAGCTCAGCCCATAGCTTAGTTTGTATAACATCTGACCCTAGAACTCTTCACAACCGTGATACCTGAATTATTTACTTCTATTGGTGGAAAATGAGTCTCAACAATTCTGTTAAAATTTGGCCCTATGGGGCGATGTTTGGGTCCTGAATATCACTTGTCAAGACCCTACTATTAACCTACCAATAGATTGTGCCCTTACTTGGTTACTACAGCATCGATGATGTATTGGTTAGCTGTCTGGCCTACTCACTTTTTTTTTCTTCTCGCTCCATTTCTATATCATATTCCTCTCTGAAACTCGCAAGTTATGTATCCCGTTTAAATAAAGGGCCGGTTTCTTTTACCTCTCTTCCTTTATGATTTTATTTCCAAACATACCTTGTGTCACTTCGTGCAGACATCCTTTGGATCTATTCTCATTTTCATTGACCATTTGTCTTACTTCTATTGCATTCCTTTTTTTCACTATGTGTGCTGAATTGGACATCCGTTGCCTGCCACGCCACCCCTCCTGCCTTTCACATTGTTGCTACATGGTATGAATCTGTATTTTCTTTGCTTGGTATGTACAGCTTTTGGACTCTTTCTTATGGTGGATTTTACTATTTAAAGGAAAATTATCTTGAATTTGATATGAGCAAGACATTTTTATTGTGTCTCTATAAGTGATTCTTCTGGTAGGTGGCTTCTTTGGCCATCTTGTGGACATTCTTGCTCTAAGGGAACTTCAAAGACAATAAATTTTAAGGTAGGACAAGTGGGGTCATGAGGCATTGATCTTTAGCTTGTGCTGCCCCGTAAGCCAACTTCTTATTCTTTATTTTATCTCTGAATATGGGGTGGAAAATAGGTTGTGTAGAGATGTCTGTCATGGTATAAGTTAACTGGTGCCTACTGCCTGGTGGGTTTTATCACTGCCTAACAGAACTTTCTTTCAAGTTTCAATCAGGTGAGGATGGCCAAGGTCTAATAGAGTGCCCCAGTTTTATTACGAGACCCTTTTATTTTGCTTTGATAATGAAGTTAAGCATCAATAGGGATTTCAGAGCATGTTCAATATTTTGCAAGAACTTCGTTAGATTAGGGGATGCTCCACTTCTTTGTAGACAATACTTTCTGTTATTTATTGCCTGGAACACTCCAAATCTTCCATGCAAAGCTTTTTTTCTGCAAATGACCTATTGGGGTTATCCAGAATTTATGTGAACCTAGCGACTCATGGAGATGTAGGCTGTTTTAACCAATATGCCTGTACACTGCCTCTTTTTATAAATTCTCTACTACCACAGCGTTGATTGAATAAGTGGAACTTTTAATAGGAAGGTCTGTATCCGGATGGAGAAACTTGTCTCCTATTTATTTGGATTTGGGTGGTCTTGAAATTGGAATTTTGAGCTAAAAAAAATATAGCTTTGATTTGTAACGGTTGTGAAGATATTTGGTAGAATAACAGAATTATGGCATAAGATCATCGATGATAACTATATGACCAGATATCTTTTGGGTAGTTTATTAACAACTAACAACAGTGGTGGACTTGTTGATGTTTGTCATTTAGTCACCAGTTGTAAAAAAACTAAGACTGGAGTCTTAAGTTTTGTATGGACTTCTATAGAAAAGAACATTTTTTAATAGTCAAAACTCTTTGCGATGAATATCAGATTTTTGTGTGTTCTACTACATCAATGAGAAGAGTCTCTATCTTCATTCCAGTTGATGGGAGGATCTCATTCATTTTTTTTGGCGGTAATATCTTGATTCCAATGAGGAAGGAGCTATTGTTGCATATTGCATATAATACTACATCTATATCCATATGCCTTAAATGAATTATGCGGCTCATTTTTTCTTGTTTCCTTCTTCTCTTCATAACTTTTGATGGACTGTGTAATAGAATGTCACTGGGAAAGAGGAGTGTGGTTCTCTGGTAGATGCCTCAATTCTCAAGTCCTTCCTGTATATCATTTTCCATGTATTGGTTTTGATGTTTTCTTTTCAAGGTTGTCCGTAGCTTCTACTTTTATTAAGAATCACAAGGCATAAATTCCAAGTCTTTGAGATGACTTTTGGAACATTTTTATTTGAAGTAATTTTTCTACAAGATATCATCAAATTTTGGGAGTGTTATTTAAAATTTCATATTTTTCTCATTGTTATTATGCCGTTGAATGGCTGGATGATGCAGTTTCCAGTGGGAAGGGTCCATCGGCAACTGAAGTCGAGGGTTGCTGCCAATGGACGAGTTGGAGCTACAGCAGCCGTATACACAGCCGCAATCTTGGAGTATCTGACTGCAGAAGTGTTGGAGCTGGCCGGGAACGCGAGCAAGGATCTGAAGGTGAAACGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGACGAAGAGCTTGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTCATTCCTCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAG

mRNA sequence

ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCGCCAACAACAAGGACAAGGATAAAAAGAAACCCGTCTCTCGCTCTTCCCGCGCTGGTCTTCAGTTTCCAGTGGGAAGGGTCCATCGGCAACTGAAGTCGAGGGTTGCTGCCAATGGACGAGTTGGAGCTACAGCAGCCGTATACACAGCCGCAATCTTGGAGTATCTGACTGCAGAAGTGTTGGAGCTGGCCGGGAACGCGAGCAAGGATCTGAAGGTGAAACGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGACGAAGAGCTTGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTCATTCCTCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAG

Coding sequence (CDS)

ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCGCCAACAACAAGGACAAGGATAAAAAGAAACCCGTCTCTCGCTCTTCCCGCGCTGGTCTTCAGTTTCCAGTGGGAAGGGTCCATCGGCAACTGAAGTCGAGGGTTGCTGCCAATGGACGAGTTGGAGCTACAGCAGCCGTATACACAGCCGCAATCTTGGAGTATCTGACTGCAGAAGTGTTGGAGCTGGCCGGGAACGCGAGCAAGGATCTGAAGGTGAAACGTATAACACCAAGGCATTTGCAGCTTGCAATCAGAGGAGACGAAGAGCTTGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTCATTCCTCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAG

Protein sequence

MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE*
Homology
[Close]
BLAST of Csa7G433390 vs. Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.0e-61
Identity = 120/134 (89.55%), Postives = 127/134 (94.78%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQFPVGRVHR LK+R  A+GRVGATA
Sbjct: 1   MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKS+KE
Sbjct: 121 PHIHKSLINKSAKE 134

[Close]
BLAST of Csa7G433390 vs. Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.2e-59
Identity = 116/136 (85.29%), Postives = 127/136 (93.38%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAANN--KDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGA 60
           M+GKG KGL+  K+ A N  KDKDKKKP+SRS+RAG+QFPVGR+HRQLK+RV+A+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSLINK++KE
Sbjct: 121 VIPHIHKSLINKTTKE 136

[Close]
BLAST of Csa7G433390 vs. Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 7.9e-59
Identity = 119/139 (85.61%), Postives = 127/139 (91.37%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKS----AANNKDKDKKK-PVSRSSRAGLQFPVGRVHRQLKSRVAANGR 60
           M+GKG KGL+  K+    AA +KDKD+KK PVSRSSRAG+QFPVGR+HRQLK RV+ANGR
Sbjct: 1   MAGKGGKGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGR 60

Query: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120
           VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA
Sbjct: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120

Query: 121 GGGVIPHIHKSLINKSSKE 135
           GGGVIPHIHKSLINK++KE
Sbjct: 121 GGGVIPHIHKSLINKTAKE 139

[Close]
BLAST of Csa7G433390 vs. Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.3e-58
Identity = 118/137 (86.13%), Postives = 121/137 (88.32%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAANN---KDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVG 60
           M+GKG KGL+  K+ A     KDK KK PVSRSSRAGLQFPVGR+HRQLK R  ANGRVG
Sbjct: 1   MAGKGGKGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVG 60

Query: 61  ATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120
           ATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG
Sbjct: 61  ATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120

Query: 121 GVIPHIHKSLINKSSKE 135
           GVIPHIHKSLINKSSKE
Sbjct: 121 GVIPHIHKSLINKSSKE 137

[Close]
BLAST of Csa7G433390 vs. Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.3e-58
Identity = 119/138 (86.23%), Postives = 126/138 (91.30%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAAN---NKDKDKKK-PVSRSSRAGLQFPVGRVHRQLKSRVAANGRV 60
           M+GKG KGL+  K+ A    +KDKDKKK PVSRSSRAGLQFPVGR+HRQLKSR +A+GRV
Sbjct: 1   MAGKGGKGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRV 60

Query: 61  GATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120
           GATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct: 61  GATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120

Query: 121 GGVIPHIHKSLINKSSKE 135
           GGVIPHIHKSLINK+SKE
Sbjct: 121 GGVIPHIHKSLINKTSKE 138

[Close]
BLAST of Csa7G433390 vs. TrEMBL
Match: A0A0A0K6F6_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_7G433390 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.1e-66
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of Csa7G433390 vs. TrEMBL
Match: A0A059AJB9_EUCGR (Histone H2A OS=Eucalyptus grandis GN=EUGRSUZ_J03033 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.8e-65
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSA+N+KDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNSKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of Csa7G433390 vs. TrEMBL
Match: A0A067KLN0_JATCU (Histone H2A OS=Jatropha curcas GN=JCGZ_06207 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.7e-63
Identity = 128/134 (95.52%), Postives = 130/134 (97.01%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLI GKS  NNKDKDKKKPVSRSSRAGLQFPVGRVHR LK+RV+ANGRVGATA
Sbjct: 1   MSGKGAKGLITGKSTLNNKDKDKKKPVSRSSRAGLQFPVGRVHRLLKTRVSANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of Csa7G433390 vs. TrEMBL
Match: D7SUM0_VITVI (Histone H2A OS=Vitis vinifera GN=VIT_04s0008g04700 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.4e-62
Identity = 127/134 (94.78%), Postives = 130/134 (97.01%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKS A NKDKDKKKPVSRSSRAGLQFPVGR+HR LKSRV ANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSPALNKDKDKKKPVSRSSRAGLQFPVGRIHRLLKSRVTANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSK+
Sbjct: 121 PHIHKSLINKSSKD 134

[Close]
BLAST of Csa7G433390 vs. TrEMBL
Match: A0A151QS62_CAJCA (Histone H2A OS=Cajanus cajan GN=KK1_046096 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 7.0e-62
Identity = 124/134 (92.54%), Postives = 129/134 (96.27%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLI GK++A NKDKDKKKP+SRSSRAGLQFPVGR+HR LKSR  ANGRVGATA
Sbjct: 1   MSGKGAKGLITGKTSATNKDKDKKKPISRSSRAGLQFPVGRIHRLLKSRTTANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of Csa7G433390 vs. TAIR10
Match: AT1G52740.1 (AT1G52740.1 histone H2A protein 9)

HSP 1 Score: 237.3 bits (604), Expect = 5.6e-63
Identity = 120/134 (89.55%), Postives = 127/134 (94.78%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQFPVGRVHR LK+R  A+GRVGATA
Sbjct: 1   MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKS+KE
Sbjct: 121 PHIHKSLINKSAKE 134

[Close]
BLAST of Csa7G433390 vs. TAIR10
Match: AT3G54560.1 (AT3G54560.1 histone H2A 11)

HSP 1 Score: 230.3 bits (586), Expect = 6.9e-61
Identity = 116/136 (85.29%), Postives = 127/136 (93.38%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAANN--KDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGA 60
           M+GKG KGL+  K+ A N  KDKDKKKP+SRS+RAG+QFPVGR+HRQLK+RV+A+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSLINK++KE
Sbjct: 121 VIPHIHKSLINKTTKE 136

[Close]
BLAST of Csa7G433390 vs. TAIR10
Match: AT2G38810.1 (AT2G38810.1 histone H2A 8)

HSP 1 Score: 221.5 bits (563), Expect = 3.2e-58
Identity = 113/136 (83.09%), Postives = 123/136 (90.44%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKS--AANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGA 60
           M+GKG KGL+  K+  AA NKD  KKK +SRSSRAG+QFPVGR+HRQLK RV+A+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSL+NK +K+
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]
BLAST of Csa7G433390 vs. TAIR10
Match: AT4G13570.2 (AT4G13570.2 histone H2A 4)

HSP 1 Score: 138.3 bits (347), Expect = 3.6e-33
Identity = 68/90 (75.56%), Postives = 76/90 (84.44%), Query Frame = 1 

Query: 35  LQFPVGRVHRQLKSRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPR 94
           ++F V R+H+QLK+RV+A+  VGAT  VY  +ILEYLT EVL+LA N SKDLKVKRITPR
Sbjct: 35  IRFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPR 94

Query: 95  HLQLAIRGDEELDTLIKGTIAGGGVIPHIH 125
           HLQLAIRGDEELDTLIKGTI GG VIPHIH
Sbjct: 95  HLQLAIRGDEELDTLIKGTIIGGSVIPHIH 124

[Close]
BLAST of Csa7G433390 vs. TAIR10
Match: AT4G27230.1 (AT4G27230.1 histone H2A 2)

HSP 1 Score: 125.2 bits (313), Expect = 3.1e-29
Identity = 75/133 (56.39%), Postives = 90/133 (67.67%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           M+G+G +   +G  AA       KK  SRSS+AGLQFPVGR+ R LK+   A  RVGA A
Sbjct: 1   MAGRGKQ---LGSGAA-------KKSTSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGV 120
            VY AA+LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV
Sbjct: 61  PVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGV 120

Query: 121 IPHIHKSLINKSS 133
           +P+IH  L+ K +
Sbjct: 121 MPNIHNLLLPKKA 122

[Close]
BLAST of Csa7G433390 vs. NCBI nr
Match: gi|449436104|ref|XP_004135834.1| (PREDICTED: probable histone H2A variant 3 [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 3.0e-66
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of Csa7G433390 vs. NCBI nr
Match: gi|659122306|ref|XP_008461070.1| (PREDICTED: probable histone H2A variant 3 [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 3.0e-66
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA
Sbjct: 76  MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 135

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 136 AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 195

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 196 PHIHKSLINKSSKE 209

[Close]
BLAST of Csa7G433390 vs. NCBI nr
Match: gi|702484189|ref|XP_010033915.1| (PREDICTED: probable histone H2A variant 3 [Eucalyptus grandis])

HSP 1 Score: 256.5 bits (654), Expect = 2.5e-65
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKSA+N+KDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNSKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of Csa7G433390 vs. NCBI nr
Match: gi|802603778|ref|XP_012073265.1| (PREDICTED: probable histone H2A variant 3 [Jatropha curcas])

HSP 1 Score: 248.8 bits (634), Expect = 5.3e-63
Identity = 128/134 (95.52%), Postives = 130/134 (97.01%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLI GKS  NNKDKDKKKPVSRSSRAGLQFPVGRVHR LK+RV+ANGRVGATA
Sbjct: 1   MSGKGAKGLITGKSTLNNKDKDKKKPVSRSSRAGLQFPVGRVHRLLKTRVSANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of Csa7G433390 vs. NCBI nr
Match: gi|225430153|ref|XP_002284738.1| (PREDICTED: probable histone H2A variant 3 [Vitis vinifera])

HSP 1 Score: 246.9 bits (629), Expect = 2.0e-62
Identity = 127/134 (94.78%), Postives = 130/134 (97.01%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60
           MSGKGAKGLIMGKS A NKDKDKKKPVSRSSRAGLQFPVGR+HR LKSRV ANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSPALNKDKDKKKPVSRSSRAGLQFPVGRIHRLLKSRVTANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSK+
Sbjct: 121 PHIHKSLINKSSKD 134

The following BLAST results are available for this feature:
BLAST of Csa7G433390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
H2AV3_ARATH1.0e-6189.55Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1[more]
H2AV1_ARATH1.2e-5985.29Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1[more]
H2AV2_ORYSJ7.9e-5985.61Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 P... [more]
H2AV3_ORYSJ2.3e-5886.13Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 P... [more]
H2AV1_ORYSJ2.3e-5886.23Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 P... [more]
BLAST of Csa7G433390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6F6_CUCSA2.1e-66100.00Histone H2A OS=Cucumis sativus GN=Csa_7G433390 PE=3 SV=1[more]
A0A059AJB9_EUCGR1.8e-6598.51Histone H2A OS=Eucalyptus grandis GN=EUGRSUZ_J03033 PE=3 SV=1[more]
A0A067KLN0_JATCU3.7e-6395.52Histone H2A OS=Jatropha curcas GN=JCGZ_06207 PE=3 SV=1[more]
D7SUM0_VITVI1.4e-6294.78Histone H2A OS=Vitis vinifera GN=VIT_04s0008g04700 PE=3 SV=1[more]
A0A151QS62_CAJCA7.0e-6292.54Histone H2A OS=Cajanus cajan GN=KK1_046096 PE=3 SV=1[more]
BLAST of Csa7G433390 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G52740.15.6e-6389.55 histone H2A protein 9[more]
AT3G54560.16.9e-6185.29 histone H2A 11[more]
AT2G38810.13.2e-5883.09 histone H2A 8[more]
AT4G13570.23.6e-3375.56 histone H2A 4[more]
AT4G27230.13.1e-2956.39 histone H2A 2[more]
BLAST of Csa7G433390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449436104|ref|XP_004135834.1|3.0e-66100.00PREDICTED: probable histone H2A variant 3 [Cucumis sativus][more]
gi|659122306|ref|XP_008461070.1|3.0e-66100.00PREDICTED: probable histone H2A variant 3 [Cucumis melo][more]
gi|702484189|ref|XP_010033915.1|2.5e-6598.51PREDICTED: probable histone H2A variant 3 [Eucalyptus grandis][more]
gi|802603778|ref|XP_012073265.1|5.3e-6395.52PREDICTED: probable histone H2A variant 3 [Jatropha curcas][more]
gi|225430153|ref|XP_002284738.1|2.0e-6294.78PREDICTED: probable histone H2A variant 3 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002119Histone_H2A
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006338 chromatin remodeling
biological_process GO:0042742 defense response to bacterium
biological_process GO:0044030 regulation of DNA methylation
biological_process GO:0009909 regulation of flower development
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0006334 nucleosome assembly
biological_process GO:0008150 biological_process
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
cellular_component GO:0005773 vacuole
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU091051cucumber EST collection version 3.0transcribed_cluster
CU154925cucumber EST collection version 3.0transcribed_cluster
CU173972cucumber EST collection version 3.0transcribed_cluster
CU175119cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G433390.1Csa7G433390.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU173972CU173972transcribed_cluster
CU154925CU154925transcribed_cluster
CU175119CU175119transcribed_cluster
CU091051CU091051transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 70..83
score: 1.3E-42coord: 55..70
score: 1.3E-42coord: 111..129
score: 1.3E-42coord: 25..47
score: 1.3E-42coord: 84..98
score: 1.3
IPR002119Histone H2ASMARTSM00414h2a4coord: 14..134
score: 1.9
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 18..103
score: 1.9
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 18..133
score: 1.2
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 4..111
score: 2.1
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 1..130
score: 2.8E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa7G433390Cla015397Watermelon (97103) v1cuwmB566
Csa7G433390MELO3C023389Melon (DHL92) v3.5.1cumeB521
Csa7G433390ClCG09G002550Watermelon (Charleston Gray)cuwcgB524
Csa7G433390Lsi02G027440Bottle gourd (USVL1VR-Ls)culsiB503
Csa7G433390MELO3C023389.2Melon (DHL92) v3.6.1cumedB501
Csa7G433390Cla97C09G164690Watermelon (97103) v2cuwmbB570
Csa7G433390CSPI07G20930Wild cucumber (PI 183967)cpicuB354
Csa7G433390Cucsa.004660Cucumber (Gy14) v1cgycuB046
Csa7G433390CmaCh08G006360Cucurbita maxima (Rimu)cmacuB921
Csa7G433390CmaCh17G008380Cucurbita maxima (Rimu)cmacuB388
Csa7G433390CmoCh08G006240Cucurbita moschata (Rifu)cmocuB906
Csa7G433390CmoCh17G008090Cucurbita moschata (Rifu)cmocuB378
Csa7G433390Cp4.1LG12g07720Cucurbita pepo (Zucchini)cpecuB161
Csa7G433390Cp4.1LG17g09080Cucurbita pepo (Zucchini)cpecuB338
Csa7G433390CsGy7G019170Cucumber (Gy14) v2cgybcuB323
Csa7G433390Carg23163Silver-seed gourdcarcuB0161
Csa7G433390Carg09564Silver-seed gourdcarcuB1041
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G433390Silver-seed gourdcarcuB0143
Csa7G433390Silver-seed gourdcarcuB0130
Csa7G433390Silver-seed gourdcarcuB0229
Csa7G433390Silver-seed gourdcarcuB0601
Csa7G433390Watermelon (97103) v2cuwmbB520
Csa7G433390Watermelon (97103) v2cuwmbB548
Csa7G433390Watermelon (97103) v2cuwmbB555
Csa7G433390Wax gourdcuwgoB677
Csa7G433390Wax gourdcuwgoB690
Csa7G433390Wax gourdcuwgoB712
Csa7G433390Cucumber (Chinese Long) v2cucuB084
Csa7G433390Cucumber (Chinese Long) v2cucuB085
Csa7G433390Cucumber (Gy14) v1cgycuB244
Csa7G433390Cucurbita maxima (Rimu)cmacuB497
Csa7G433390Cucurbita maxima (Rimu)cmacuB811
Csa7G433390Cucurbita moschata (Rifu)cmocuB072
Csa7G433390Cucurbita moschata (Rifu)cmocuB185
Csa7G433390Cucurbita moschata (Rifu)cmocuB263
Csa7G433390Cucurbita moschata (Rifu)cmocuB486
Csa7G433390Cucurbita moschata (Rifu)cmocuB803
Csa7G433390Melon (DHL92) v3.5.1cumeB548
Csa7G433390Watermelon (Charleston Gray)cuwcgB535
Csa7G433390Watermelon (Charleston Gray)cuwcgB564
Csa7G433390Watermelon (Charleston Gray)cuwcgB569
Csa7G433390Watermelon (97103) v1cuwmB578
Csa7G433390Watermelon (97103) v1cuwmB585
Csa7G433390Watermelon (97103) v1cuwmB610
Csa7G433390Watermelon (97103) v1cuwmB615
Csa7G433390Cucurbita pepo (Zucchini)cpecuB125
Csa7G433390Cucurbita pepo (Zucchini)cpecuB378
Csa7G433390Cucurbita pepo (Zucchini)cpecuB588
Csa7G433390Bottle gourd (USVL1VR-Ls)culsiB501
Csa7G433390Bottle gourd (USVL1VR-Ls)culsiB532
Csa7G433390Cucumber (Gy14) v2cgybcuB093
Csa7G433390Cucumber (Gy14) v2cgybcuB094