Carg23163 (gene) Silver-seed gourd

Overview
NameCarg23163
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionHistone H2A
LocationCucurbita_argyrosperma_scaffold_194 : 237151 .. 243440 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTATCTACCTCGCTTCCCGTCGTTCCTTATCGGTTCTTTTTCTTTCTCCTCTAAAAATCCGTCACTGCAACTGAGAGGAACCCTAATTCTTGGGCTTCAAAATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTTTCTCGCTCTTCCCGCGCTGGTCTCCAGGTCTCTCTCTTTCTATACACTTCACCACTTGTTTTTCTACCTTCCTTTTGTGTGTCTTCTGTGGATCTGTGTTCGTTTGAGGTTTATGCCGGTTTTCACTTTAGAAATCCACAAATTTTCTTACTTAGATGCGTTTCAAGGTTTCCAAGCCTTAGAATTTGGACATTGGGTGTTTTTTTTTCTTCTAAAACTTTAAAATTTTTGTGTTCGAAAGTTTATATTTGTTTATTTCAGATGGGTCCTATTTTTCCACCTGCGCGTCTTGTTTTCCTGTTTATTGAATGACTTGATGAGTTCGTTTTCTTCATGGGCTGTGCTTATTGGAGCTGTAAGCGGGTGAGATCGACGTTTAGGAGGTGGCTGTCTGAGAATCTCTGGAGGGGTACCTCTAAGTCCTTCTCTTTGATGTTAGAAGTAGGTGCGTGTTTCTGGGTCTGTGTTCCTTTAGCTAGTGTCGGTTTGCTATTCTTGGTCTGTGCTCGAAGAAGTTGCCTTGCCCCAATGTTCTTTTGTCGAGGGATGAAATGGCTGGAAAGAAAGTGTAACGTTCGAAGCCCACCTCTAGTATGATATGGTATGTGCAAGTGCGAAGTATGCATACAAGATCTAGTCAATTGTAATGGCCCAAGCCCGCCGCTAGTAGATAGTGTCCTCTATCTTCTTTGGGCTTTCCCTTTCGAGCTTTCCTTCAAGGTTTTTAAAACGCGTATGCTAGGAAGAGGTTTCTACACCCTTATTAAGAATTCTTCGTTCTCCTCCCCAACCTATATGAGATCTCACATCATTATAGATGGATTGGGATTCGACTATTCTTATGTTTAGAACTTTCAAGATCATAATGCATGGGTTCACAGTAGGCCTTTATATATCTTGTTCGTTTACATTGTTCTTAGTCTTTTTCCTAGCGTTAGAGTTATAGAAACTTGAAAATTGGACTAAAAGTTTTATTGTGAACTCGAAAATATGAATTACAGTTGATTATCCCAAGTAATTTGAGAAACTGAGGAAAATTCTTAATCACCATTTAGTGACTTACTCTGTAGTCAATGACTAATATGCTTTCACTTTATCCTCAAGGTGTATTTGACCAAGAGGTTCTCCTGTGGAAAATTAAATAATTGTATATAGAGCAAACTTGAAGTGTCAACAAGTTTTTCTCCCTTCTCCACTCCTTTTTGTAGAAAAATTCAAGCCATTGCTTCTGGGTAAATTCTCCTAGATATTTGAAACACAGTTGGTTGTTGCCAATAATTTGTAACAATAAGTGCAGTCCATAATTCAGTATATATAACACCTAGCGCTAGAACTCATCATGGCCATGGCACTTGTATTATTTTCTTCTTTTGGTAGAGAATGATTCTCAGCAATTACTTTGAAATTCGGCATTGTGTCCGAAACTTCACAAGTCCAAGGCCCATCTAAGCTCACGCCCTTGCTACATCTTCAATGATACTTCGTTTAGCATTTGTTGGACCTCTCTTCCTTTAGAGTTCTAGTTCCAACCACACCTTTTGTCATTGGCTTAGGCTTCCTTTAGACTCGTTTTTATTTTCATCAACTACTTGTCTTGCTTCTATTGCATCCCTTTTTCCCCACATGTGCTCAATTGGACATCCACTCCATGCCACTCTACTCATTGTTTTATGCATTGTTATGTGTTTTCTTGGTTTTTATGTGTCGTTCTCAAACCTTTTCATATGGAGGTGGATTTTATAATTAAAAGGGGAAAAAAAAAAACTCTCTTTAGTTTGACTTGAGCTACACATTATTGCCCTTTCATGCGATTCTTCTGGTAGGTGGCGTTTTTGGCCATCTTATGGAAAAACTTGCTCTTGAGGAATACCGAACACAAGAAATTTCAGGGTAAGAGGGTCTTGGGGAGTGATGTGGGTCTTGGCTCACTGTTGTGCCTCTCTTTAGGTCATTTACAAGTAGCACCTGTTATCATTTATCTTTTTCTTTTTAACTCTTAGTAACTAGAGTCTTTTCAAGTAGTTTTGTTCTGTGTTTAGTAGCTCCTTTTTAGTTTAATCCTTTTCTTTCATTCAAAATAAGGATGGAAGGTGGATTGTATGGAGAGTTATGTCATGGTATTGGTGGTGGGGTTTATCATTACAAAACAAAATCTCTCTCAATCAAGAGAGGAAGGTACAGGTCTAAATAGTGCCCCCGTTGAATTATTACAGACATGTTTTTCTTTGATAATGAGGAAAAGTTTCCGGCGTATGGTCAATGTTTTGCAAGAATTTTGTTTGATTAGGGGATAGGGCTACTTTTTCTTGGGCAGCAATTGTTGGTCTTCATTGTCTGAAATATACTCTAAATCTTTCATGTTAAGTTTTTTCTTTGCCTGTGTTTAGCTTCTCTTGGGGAGGATAGCCAGAATTTGTGGAACTCTGGAACCCATTGACTGACGATGTTGTAGAAAGTTATGGTAATAGAAACTTGCATTTCTCGAAATAGGAGACTAAAGGGATCCAAGCTGTTTTAACCAATATTCTTGTACATTACCTTTTTTTAGATTTCACATTAGCCAAAACTTGAGCTCATGACCTGCCCAGGAACACAGATTGCCGTGCCCTCGACCAATAAACCAAGAAGTTGTTATTGTACAGTACATTTTTTTAATAAATTCTCTACCACCGTGGTATTGATTGAAGAAATTATCATGAACTTTTATTGGGAAGGTCCATATGTGGATGGCGAAAATTGTCCCCTACTCCTTTGGACTCGGGTGGTCTTGAAATTGGAATTTTGAGTTTGAAAAACACAGCTTTGATTTGTAAAGGTTGTTAAGATATTTGATAGAATAAAAATTGATAGTGGCGTAGCATTATCATTGATAAATATGGCTATAAATCTATTGAGTTAACAACAGTGGTGCACTAGAAGTTGCTGGTCATCCGTCGTTAGGGGTGAAATGGATTGGTTTAGGTCAGTTTTTGTAGAAATCCGATCTGACCCATTCCGATTTAGAGAAGAAACCCATCTCAATTCATGTTTGAACAAAAGTAGGTCGGGTCGAGCCACTCATGTTTTTTTCCCCACCCAGTCCATTTCCATTTTGGTTTCTCCATCTCCTTTACCCATTCCTTTTTCTTCCCAAACCTGACCAAATGTTTGTATCAATCAATCTTCTTCTTTTCCACAAAATCCATCTTAATTTCTCAATCTTCAATTTCCCCCTCCTTCCCTTTCCATATTTCCCCTCTTCCTCTTCCCTTGTTTAAACCACCATCCTCAACATCATAAAACTACAACATTATCCAAATCGTAACCCAAATCATGAGTGGGTTGAACCTAAAGATAGATCTGGGTTAGGTGATAGAAAGAAAGGAAGAAAGAGAGCAAAAAAAAGGTGTGGCCAGGTGAAATAGGGAAAGCAAGCTTCAGATTGAGAAAATCTAGTCTGGGTTGCCGTTGAAGAAGAAAACCATGCTTGGGTTGCCTTCGAAGCAGAAATCCTGTTGTTTTCGTTTGTACCTGGATGTGAGAACGACGATTGGAAGATTTTGATTTAAGAAAATGATGGTTGCCATGTTGATTGGGAGAGATCCATGACTTGGATTATAGACTAGAAAGAGTGTAAGAACGGAAGCGAATCAAGGAGAGAGAGAGAGATAGCATGAGAAATGAATGAAACCTAACTCAAATAATGAGTCAGTTCAGGTAAATCAAGAACTGAACTGAACCATAGTGGTTCGGTTCGGGTCAAATAATGGTTAAAAGTGAACCAAACTGACCCCCTAACCGAAGAAACCCTTCAGTCATAACAAACTACAAAAAACTGTTCTTGCAAACCTAGAATGCCAATGGCATTGATTGAAGATTCTAAAGTTTTGAATGTTCAAATGGATCAAATGATGGAATGAGTGTAAATTTCCCAGACCGTACATGGTGCTAACATTGATTGTAGTCATTCCATGTATTGAGGATTTTGGGGTTAGATTCCGTTGATATGGAATTTTGAATTGATTTCCAGTTATTCATCAACTATAGGTCTTCCCTGTAACATACCCAGACGTAAAAATTTGAAGATTTGGCAAGTCTGTTTTTTTTTTTTTATAATTCTTGTTGATAAGTTGATACCTAATTGTGTTTTGAATGGTCTTGAAAACGCACTCAAGTATGTACAGCTTTTCTTCCCCCAAATTCTTTGTTTTTAAGCCACTGGAAACCATCATTTCCTGCCATGTGGTGTCTGTTTAACAATTGTTAAAAGTGAAAACCGGTAATGTGCTGACTTTAATTGTGCTTCTATATAACCCCTTGTGAGGGAATTTCAGATTTCTGTATTTTTCTTACTACATCAACGAGATGAGTTACTTTTCCTTCAATCCTGTTGAGGCTCCTCTCTCTCTCTCTCTCTTTTGCTGGTAGTATTACCCTCTAACGGAGGAAGAAGAAGCTAGTTTTGCATATTACATATATATTATATCTATCTTGTTATGCTTTTATTGAGTTCTGCCACCCATTTTTCCTTGCTTTCCTTTTGTTTTCTTCTTAGAACTACTTTTATATTTTGATCAATATGCAACTTATGATGGACTGCGGTGGATAAAGTGTGGCCGGTAAAGACGAAGATGTGGCGTTTGAAAACATTTTAAGATGAAACTGGTGCTTTTGTAGATGCTTCATTTTAGCCCTTTTTGCTGTATATCTTCTGAACTAATGGCTACTCATTTTCTGTGTACACATTTTTTATGCTTTCTTTTCAATGTTGGTTTATAGTTTCTTCTGCTCTGCGTATATTCCTTTTAGTATACTGCAAAAATTTTCTCTGTTGTGGGATGATTAGAATATCACCCATGTTTTTATTGCACATCTTGTTTGGTATAATAAGGCACAATTACCTAAAGGGATTTCTAGATGACTTTATAGCAGTTTGATGTATAACTTTTCTATAAGATAAAGTAGCATTCAAAAATGCTTTGGGATCGTTTTGAAACTTCAAAAAAATATTTGCAGATTATGAAAGATTGACTTCGTAGCATTTTGATGTATAACTTTTGGACTAGTATGAAAGTTATGCATACATATGTTATTCTCCATTTTTGTTTGTTATCTTTGAAATATAAATGGCTTAGACAGTGGAAGCAATTTCTTTCCCTTTTTTTTCTTGAACTTTTTCACACTTTCTCATTGTTATTGTTGTTGAATTGGATGGCTTGGTGATACAGTTTCCAGTGGGAAGGGTTCACCGGCAACTTAAAACAAGAGTTGCCGCCAACGGTCGTGTCGGGGCTACAGCAGCTGTATACACAGCAGCGATCTTGGAGTACCTGACTGCAGAAGTGTTAGAGCTGGCCGGGAACGCGAGCAAGGATCTGAAGGTAAAGCGTATAACACCAAGGCATTTGCAACTTGCAATCAGAGGAGATGAAGAACTGGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTGATCCCCCACATCCACAAATCACTCATTAACAAATCCTCCAAGGAATGAATTGAATTGAATAGGTTGTCTGTCTCTTTTAGAAGTATGGGTTTTTTTATCCTTAATCTTACAGTTTAGTTGAGTGGTTGTCATATGCTCAGTCATGTCATTGTCTGGTCTAATTTAGTTGTGTCATAATATCACCAATTCTACTTTTGTGATGTGATATTGCTTTATCCATTTAGTAGGCACAAGGAGATACGAAGATATTTCTTGTTTTGTAAGTTTTAATATGCAAAATCTCTCTCATTTTTAGTCTCATTTCTGACTCTGTTCATCTGAAACATCTCTCATTCATTGCTGAAAAGGAAATGAAGCTAAGCCAAGTTTGAATAAGTGTCTTTCTTGACGAACTCTTGAAAATCTAACGAAAAAGATTTACAAATATAAGGTTATCTCCACAACACTAGGTGGGAAATAACACCTTGGTTCAGTAAGGGGAATTACAGGGTTGTTACTAAATAGAACAATTTGGAAACGGCTCTCAAAAACTGTCACCCAAAGAAGTGGCCTTTTCGCCAATGTTCTTGTGGGTGAGTATTTCAACGAGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAATAGGAAAAAGGGTGCTG

mRNA sequence

TTTATCTACCTCGCTTCCCGTCGTTCCTTATCGGTTCTTTTTCTTTCTCCTCTAAAAATCCGTCACTGCAACTGAGAGGAACCCTAATTCTTGGGCTTCAAAATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTTTCTCGCTCTTCCCGCGCTGGTCTCCAGTTTCCAGTGGGAAGGGTTCACCGGCAACTTAAAACAAGAGTTGCCGCCAACGGTCGTGTCGGGGCTACAGCAGCTGTATACACAGCAGCGATCTTGGAGTACCTGACTGCAGAAGTGTTAGAGCTGGCCGGGAACGCGAGCAAGGATCTGAAGGTAAAGCGTATAACACCAAGGCATTTGCAACTTGCAATCAGAGGAGATGAAGAACTGGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTGATCCCCCACATCCACAAATCACTCATTAACAAATCCTCCAAGGAATGAATTGAATTGAATAGGTTGTCTGTCTCTTTTAGAAGTATGGGTTTTTTTATCCTTAATCTTACAGTTTAGTTGAGTGGTTGTCATATGCTCAGTCATGTCATTGTCTGGTCTAATTTAGTTGTGTCATAATATCACCAATTCTACTTTTGTGATGTGATATTGCTTTATCCATTTAGTAGGCACAAGGAGATACGAAGATATTTCTTGTTTTGTAAGTTTTAATATGCAAAATCTCTCTCATTTTTAGTCTCATTTCTGACTCTGTTCATCTGAAACATCTCTCATTCATTGCTGAAAAGGAAATGAAGCTAAGCCAAGTTTGAATAAGTGTCTTTCTTGACGAACTCTTGAAAATCTAACGAAAAAGATTTACAAATATAAGGTTATCTCCACAACACTAGGTGGGAAATAACACCTTGGTTCAGTAAGGGGAATTACAGGGTTGTTACTAAATAGAACAATTTGGAAACGGCTCTCAAAAACTGTCACCCAAAGAAGTGGCCTTTTCGCCAATGTTCTTGTGGGTGAGTATTTCAACGAGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAATAGGAAAAAGGGTGCTG

Coding sequence (CDS)

ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGATAAGGATAAAAAGAAGCCCGTTTCTCGCTCTTCCCGCGCTGGTCTCCAGTTTCCAGTGGGAAGGGTTCACCGGCAACTTAAAACAAGAGTTGCCGCCAACGGTCGTGTCGGGGCTACAGCAGCTGTATACACAGCAGCGATCTTGGAGTACCTGACTGCAGAAGTGTTAGAGCTGGCCGGGAACGCGAGCAAGGATCTGAAGGTAAAGCGTATAACACCAAGGCATTTGCAACTTGCAATCAGAGGAGATGAAGAACTGGACACACTCATTAAAGGAACCATTGCTGGTGGAGGAGTGATCCCCCACATCCACAAATCACTCATTAACAAATCCTCCAAGGAATGA

Protein sequence

MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE
Homology
[Close]
BLAST of Carg23163 vs. NCBI nr
Match: XP_022953233.1 (probable histone H2A variant 3 [Cucurbita moschata] >XP_022959863.1 probable histone H2A variant 3 [Cucurbita moschata] >XP_022991416.1 probable histone H2A variant 3 [Cucurbita maxima] >XP_023004192.1 probable histone H2A variant 3 [Cucurbita maxima] >XP_023548701.1 probable histone H2A variant 3 [Cucurbita pepo subsp. pepo] >XP_023513932.1 probable histone H2A variant 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254.2 bits (648), Expect = 2.4e-64
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of Carg23163 vs. NCBI nr
Match: XP_022152569.1 (probable histone H2A variant 3 [Momordica charantia])

HSP 1 Score: 252.7 bits (644), Expect = 7.1e-64
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of Carg23163 vs. NCBI nr
Match: XP_004135834.1 (PREDICTED: probable histone H2A variant 3 [Cucumis sativus] >XP_008461070.2 PREDICTED: probable histone H2A variant 3 [Cucumis melo] >KGN45310.1 hypothetical protein Csa_7G433390 [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 1.6e-63
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of Carg23163 vs. NCBI nr
Match: XP_010033915.1 (PREDICTED: probable histone H2A variant 3 [Eucalyptus grandis] >KCW53786.1 hypothetical protein EUGRSUZ_J03033 [Eucalyptus grandis])

HSP 1 Score: 250.8 bits (639), Expect = 2.7e-63
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSASN+KDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNSKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of Carg23163 vs. NCBI nr
Match: XP_012073265.1 (probable histone H2A variant 3 [Jatropha curcas] >XP_021610858.1 probable histone H2A variant 3 [Manihot esculenta] >XP_021628111.1 probable histone H2A variant 3 [Manihot esculenta] >XP_021638743.1 probable histone H2A variant 3 [Hevea brasiliensis] >KDP37151.1 hypothetical protein JCGZ_06207 [Jatropha curcas] >OAY36798.1 hypothetical protein MANES_11G049100 [Manihot esculenta] >OAY52880.1 hypothetical protein MANES_04G118600 [Manihot esculenta])

HSP 1 Score: 244.2 bits (622), Expect = 2.5e-61
Identity = 129/134 (96.27%), Postives = 130/134 (97.01%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLI GKS  NNKDKDKKKPVSRSSRAGLQFPVGRVHR LKTRV+ANGRVGATA
Sbjct: 1   MSGKGAKGLITGKSTLNNKDKDKKKPVSRSSRAGLQFPVGRVHRLLKTRVSANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of Carg23163 vs. TAIR10
Match: AT1G52740.1 (histone H2A protein 9)

HSP 1 Score: 233.0 bits (593), Expect = 1.1e-61
Identity = 121/134 (90.30%), Postives = 129/134 (96.27%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQFPVGRVHR LKTR  A+GRVGATA
Sbjct: 1   MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKS+KE
Sbjct: 121 PHIHKSLINKSAKE 134

[Close]
BLAST of Carg23163 vs. TAIR10
Match: AT2G38810.1 (histone H2A 8)

HSP 1 Score: 214.2 bits (544), Expect = 5.1e-56
Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGA 60
           M+GKG KGL+  K  +A+ NKD  KKK +SRSSRAG+QFPVGR+HRQLK RV+A+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSL+NK +K+
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]
BLAST of Carg23163 vs. TAIR10
Match: AT3G54560.1 (histone H2A 11)

HSP 1 Score: 210.3 bits (534), Expect = 7.3e-55
Identity = 110/136 (80.88%), Postives = 123/136 (90.44%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNK--DKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGA 60
           M+GKG KGL+  K+ + NK        P+SRS+RAG+QFPVGR+HRQLKTRV+A+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKXXXXXXXXPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSLINK++KE
Sbjct: 121 VIPHIHKSLINKTTKE 136

[Close]
BLAST of Carg23163 vs. TAIR10
Match: AT4G13570.2 (histone H2A 4)

HSP 1 Score: 137.1 bits (344), Expect = 7.9e-33
Identity = 68/90 (75.56%), Postives = 76/90 (84.44%), Query Frame = 0 

Query: 35  LQFPVGRVHRQLKTRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPR 94
           ++F V R+H+QLK RV+A+  VGAT  VY  +ILEYLT EVL+LA N SKDLKVKRITPR
Sbjct: 35  IRFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPR 94

Query: 95  HLQLAIRGDEELDTLIKGTIAGGGVIPHIH 125
           HLQLAIRGDEELDTLIKGTI GG VIPHIH
Sbjct: 95  HLQLAIRGDEELDTLIKGTIIGGSVIPHIH 124

[Close]
BLAST of Carg23163 vs. TAIR10
Match: AT1G08880.1 (Histone superfamily protein)

HSP 1 Score: 121.3 bits (303), Expect = 4.5e-28
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 0 

Query: 25  KPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASK 84
           K VSRSS+AGLQFPVGR+ R LK+   A  RVGA A VY +A+LEYL AEVLELAGNA++
Sbjct: 21  KSVSRSSKAGLQFPVGRIARFLKSGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAAR 80

Query: 85  DLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 129
           D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+
Sbjct: 81  DNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

[Close]
BLAST of Carg23163 vs. Swiss-Prot
Match: sp|Q9C944|H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana OX=3702 GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.9e-60
Identity = 121/134 (90.30%), Postives = 129/134 (96.27%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQFPVGRVHR LKTR  A+GRVGATA
Sbjct: 1   MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKS+KE
Sbjct: 121 PHIHKSLINKSAKE 134

[Close]
BLAST of Carg23163 vs. Swiss-Prot
Match: sp|Q8S857|H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-56
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKS----ASNNKDKDKKK-PVSRSSRAGLQFPVGRVHRQLKTRVAANGR 60
           M+GKG KGL+  K+    A+ +KDKD+KK PVSRSSRAG+QFPVGR+HRQLK RV+ANGR
Sbjct: 1   MAGKGGKGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGR 60

Query: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120
           VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA
Sbjct: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120

Query: 121 GGGVIPHIHKSLINKSSKE 135
           GGGVIPHIHKSLINK++KE
Sbjct: 121 GGGVIPHIHKSLINKTAKE 139

[Close]
BLAST of Carg23163 vs. Swiss-Prot
Match: sp|Q84MP7|H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-56
Identity = 118/137 (86.13%), Postives = 123/137 (89.78%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSA---SNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVG 60
           M+GKG KGL+  K+    S  KDK KK PVSRSSRAGLQFPVGR+HRQLK R  ANGRVG
Sbjct: 1   MAGKGGKGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVG 60

Query: 61  ATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120
           ATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG
Sbjct: 61  ATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120

Query: 121 GVIPHIHKSLINKSSKE 135
           GVIPHIHKSLINKSSKE
Sbjct: 121 GVIPHIHKSLINKSSKE 137

[Close]
BLAST of Carg23163 vs. Swiss-Prot
Match: sp|Q8H7Y8|H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.8e-56
Identity = 118/138 (85.51%), Postives = 128/138 (92.75%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSA---SNNKDKDKKK-PVSRSSRAGLQFPVGRVHRQLKTRVAANGRV 60
           M+GKG KGL+  K+    S +KDKDKKK PVSRSSRAGLQFPVGR+HRQLK+R +A+GRV
Sbjct: 1   MAGKGGKGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRV 60

Query: 61  GATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120
           GATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct: 61  GATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120

Query: 121 GGVIPHIHKSLINKSSKE 135
           GGVIPHIHKSLINK+SKE
Sbjct: 121 GGVIPHIHKSLINKTSKE 138

[Close]
BLAST of Carg23163 vs. Swiss-Prot
Match: sp|Q9SII0|H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana OX=3702 GN=At2g38810 PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 9.1e-55
Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGK--SASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGA 60
           M+GKG KGL+  K  +A+ NKD  KKK +SRSSRAG+QFPVGR+HRQLK RV+A+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSL+NK +K+
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]
BLAST of Carg23163 vs. TrEMBL
Match: tr|A0A1S3CF35|A0A1S3CF35_CUCME (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103499771 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.0e-63
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of Carg23163 vs. TrEMBL
Match: tr|A0A0A0K6F6|A0A0A0K6F6_CUCSA (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G433390 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.0e-63
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of Carg23163 vs. TrEMBL
Match: tr|A0A059AJB9|A0A059AJB9_EUCGR (Histone H2A OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J03033 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.8e-63
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSASN+KDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNSKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of Carg23163 vs. TrEMBL
Match: tr|A0A218XBS8|A0A218XBS8_PUNGR (Histone H2A OS=Punica granatum OX=22663 GN=CDL15_Pgr007850 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.7e-61
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSA  NKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSA--NKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 132

[Close]
BLAST of Carg23163 vs. TrEMBL
Match: tr|A0A251L3N4|A0A251L3N4_MANES (Histone H2A OS=Manihot esculenta OX=3983 GN=MANES_04G118600 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.7e-61
Identity = 129/134 (96.27%), Postives = 130/134 (97.01%), Query Frame = 0 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLI GKS  NNKDKDKKKPVSRSSRAGLQFPVGRVHR LKTRV+ANGRVGATA
Sbjct: 1   MSGKGAKGLITGKSTLNNKDKDKKKPVSRSSRAGLQFPVGRVHRLLKTRVSANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

The following BLAST results are available for this feature:
BLAST of Carg23163 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022953233.12.4e-64100.00probable histone H2A variant 3 [Cucurbita moschata] >XP_022959863.1 probable his... [more]
XP_022152569.17.1e-6499.25probable histone H2A variant 3 [Momordica charantia][more]
XP_004135834.11.6e-6398.51PREDICTED: probable histone H2A variant 3 [Cucumis sativus] >XP_008461070.2 PRED... [more]
XP_010033915.12.7e-6398.51PREDICTED: probable histone H2A variant 3 [Eucalyptus grandis] >KCW53786.1 hypot... [more]
XP_012073265.12.5e-6196.27probable histone H2A variant 3 [Jatropha curcas] >XP_021610858.1 probable histon... [more]
BLAST of Carg23163 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G52740.11.1e-6190.30histone H2A protein 9[more]
AT2G38810.15.1e-5682.35histone H2A 8[more]
AT3G54560.17.3e-5580.88histone H2A 11[more]
AT4G13570.27.9e-3375.56histone H2A 4[more]
AT1G08880.14.5e-2863.81Histone superfamily protein[more]
BLAST of Carg23163 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9C944|H2AV3_ARATH1.9e-6090.30Probable histone H2A variant 3 OS=Arabidopsis thaliana OX=3702 GN=At1g52740 PE=1... [more]
sp|Q8S857|H2AV2_ORYSJ1.7e-5684.89Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g... [more]
sp|Q84MP7|H2AV3_ORYSJ1.7e-5686.13Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g... [more]
sp|Q8H7Y8|H2AV1_ORYSJ2.8e-5685.51Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g... [more]
sp|Q9SII0|H2AV2_ARATH9.1e-5582.35Probable histone H2A variant 2 OS=Arabidopsis thaliana OX=3702 GN=At2g38810 PE=2... [more]
BLAST of Carg23163 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CF35|A0A1S3CF35_CUCME1.0e-6398.51Histone H2A OS=Cucumis melo OX=3656 GN=LOC103499771 PE=3 SV=1[more]
tr|A0A0A0K6F6|A0A0A0K6F6_CUCSA1.0e-6398.51Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G433390 PE=3 SV=1[more]
tr|A0A059AJB9|A0A059AJB9_EUCGR1.8e-6398.51Histone H2A OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J03033 PE=3 SV=1[more]
tr|A0A218XBS8|A0A218XBS8_PUNGR1.7e-6197.76Histone H2A OS=Punica granatum OX=22663 GN=CDL15_Pgr007850 PE=3 SV=1[more]
tr|A0A251L3N4|A0A251L3N4_MANES1.7e-6196.27Histone H2A OS=Manihot esculenta OX=3983 GN=MANES_04G118600 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: INTERPRO
TermDefinition
IPR032458Histone_H2A_CS
IPR007125Histone_H2A/H2B/H3
IPR032454Histone_H2A_C
IPR009072Histone-fold
IPR002119Histone_H2A
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23163-RACarg23163-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 70..83
score: 84.63
coord: 55..70
score: 71.55
coord: 111..129
score: 51.98
coord: 25..47
score: 73.0
coord: 84..98
score: 65.78
IPR002119Histone H2ASMARTSM00414h2a4coord: 14..134
e-value: 3.1E-69
score: 246.0
IPR002119Histone H2ACDDcd00074H2Acoord: 26..130
e-value: 5.96675E-54
score: 166.742
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 11..134
e-value: 1.5E-52
score: 178.9
IPR009072Histone-foldSUPERFAMILYSSF47113Histone-foldcoord: 4..111
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 104..133
e-value: 9.3E-11
score: 41.2
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 18..103
e-value: 1.0E-19
score: 71.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availablePANTHERPTHR23430:SF105SUBFAMILY NOT NAMEDcoord: 1..133
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 1..133
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 33..39

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg23163Cla015397Watermelon (97103) v1carwmB0138
Carg23163Csa7G433390Cucumber (Chinese Long) v2carcuB0161
Carg23163MELO3C023389Melon (DHL92) v3.5.1carmeB0149
Carg23163ClCG09G002550Watermelon (Charleston Gray)carwcgB0139
Carg23163CSPI07G20930Wild cucumber (PI 183967)carcpiB0167
Carg23163Cucsa.004660Cucumber (Gy14) v1carcgyB0178
Carg23163CmaCh08G006360Cucurbita maxima (Rimu)carcmaB0193
Carg23163CmaCh17G008380Cucurbita maxima (Rimu)carcmaB0191
Carg23163CmoCh08G006240Cucurbita moschata (Rifu)carcmoB0199
Carg23163CmoCh17G008090Cucurbita moschata (Rifu)carcmoB0197
Carg23163Lsi02G027440Bottle gourd (USVL1VR-Ls)carlsiB131
Carg23163Cp4.1LG12g07720Cucurbita pepo (Zucchini)carcpeB0208
Carg23163Cp4.1LG17g09080Cucurbita pepo (Zucchini)carcpeB0210
Carg23163CsGy7G019170Cucumber (Gy14) v2carcgybB0159
Carg23163MELO3C023389.2Melon (DHL92) v3.6.1carmedB0152
Carg23163CsaV3_7G032770Cucumber (Chinese Long) v3carcucB0168
Carg23163Cla97C09G164690Watermelon (97103) v2carwmbB0151
Carg23163Bhi09G000053Wax gourdcarwgoB0184
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg23163Carg09564Silver-seed gourdcarcarB169
The following block(s) are covering this gene:
GeneOrganismBlock
Carg23163Melon (DHL92) v3.6.1carmedB0151
Carg23163Watermelon (Charleston Gray)carwcgB0140
Carg23163Watermelon (97103) v1carwmB0139
Carg23163Watermelon (97103) v2carwmbB0152
Carg23163Wax gourdcarwgoB0183
Carg23163Cucumber (Gy14) v2carcgybB0158
Carg23163Cucurbita maxima (Rimu)carcmaB0192
Carg23163Cucurbita moschata (Rifu)carcmoB0198
Carg23163Cucurbita pepo (Zucchini)carcpeB0209
Carg23163Wild cucumber (PI 183967)carcpiB0166
Carg23163Cucumber (Chinese Long) v2carcuB0160
Carg23163Cucumber (Chinese Long) v3carcucB0167
Carg23163Bottle gourd (USVL1VR-Ls)carlsiB130
Carg23163Melon (DHL92) v3.5.1carmeB0148