CmoCh17G008090 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G008090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionHistone H2A
LocationCmo_Chr17 : 7710879 .. 7713917 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGGGGGGAGGGTACACTACTTTTATCGACCTCGCTCGCCGTCGCGCCCCTTATCGGTTTCTTTCTCTTTCTCTTCCATTGATCCGTCGTCCAAACTCCTCCTTCACTGAAAGCGAGAGGAACCCTAATTTTTGGGCTGCAAAAATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGACAAAGATAAAAAGAAACCTGTCTCTCGCTCTTCCCGCGCTGGTCTCCAGGTTTCCCTCTTTTATACACTTCAACACTTGTATTCTTCCATCCTTTTGGTGTCTCTTGTATGGATCTGTATTTATGATGCTTGTTTGAGGTCCATGCCTGTCAATTTCAAACGCATAAATTTTCCAATTTAGACGCGTTTCGTGGTTTTCAAGCCTCTGTGTTTAGACATTTGGAGTGGAGTTGTTTTAAATTTTCGTGTTTCGAAGTTTATATTTGTTTGTACTTGTTTCTTATTTTCGTCTCTTTTGATGAGTATGGTGAGTTCTAAGTTAGTTTCGTCTGTATGAGATCGTCTGTTGTTGAATGTTTAGGATGTGTTCGTTTGAGAATCTCTAGAGGTGTAGCTCGAAGTCCTTCTCTTTGATGTTAGAAGTAGGTGCGTGCCTTTGGGTTTTTAGTATTTTGAATGTGGTTCTGTGATCCTCCTTTGAGCCTGTTTCTTTTGAGAACCTCGGTTTGTCAATGTTCTTCGGTGGTTGGAGAAATTGTCCTGCGGTAATGACCTGTTTGACTTAGTCTGATGTTGTTGCACTTATTAGTTCATAACATTGGTAGTGGGTATTAGCTCATACTTCCCTCTGTGCTGTCTTTTTCTTCTTTGTTTTGTAGCTCCTCTTTGGTTTAAGCTTTTGTGTTCATTCAAAATAAGGGTGGAACATGGATTATATGTAGACAACGTATGTGTCATGGTATTAGAAAATGTGGTGGATTTTATTAGTGTAGAACACAAGCTTTCTCTCAATTAGATGAGGAAGGTCAAGGTCTAAATAGTGTCTGTTGAACTATTACGAGACACTTCTGTTTTTCTTTTTTAATGAAGTCGAGTATTAAGAGGATTTCAAAGTATGTTCAATGTTTTGCAGAAAGTTTGTTAGATTAGGGGATGGGGCTACTTTTTCTTCGGCAGTAATTGCTGGCATAGAACATATTACAAGTCTTTCATGCTACATTTTTTCTTCGCTAAATGACCTCTTGGGAGTTGTCGGAATATGTGTGAACCAAGTGACTGACGAAGCTGTGGAAAGCTATGGGAATCGAAACTTGTATCTTTCGAAATAGATTGGAGATGCAAGCTGTTTTATTCAATATTCTTCTACACTGCTTCATCTTTCGAAATAGATTGAAAATATTATCAGGAATTGATTTTAAATGGGAAAGTCTATATCTTGATGGAGAAAATTGTCTCCCACTCCTTTGGACCTGGTTCAACTTGGAATTGGAATTCAGTGTTCGAAAAATATGAACTTCACTTGACATGGAATTTTACAATTGATGACTTACCCATCCTTTCTTCACCCTTAGGCTTTCATGTATAGCATTATCTAGATGTAAGAATTTCGGAGATTGGAGAAGTCTGGGAATTTCAACTTTCTTTCGGTAGGTTGATAATCAAGTGCCTATTGAAGGGTCTTGAGCATGTACAGCCCTTTCTCCCCTGAACCTTTTGTTTTCAAGCTACCGAATAATCCCAACCCCTGGGCTATTTCCTGCCTTTGTAGTGTCTGTTTAGGAATTGTTAGAGTGAAAACCACGATCATGTTGACTCAGATAGTGCTTTTCTATGAACTCATTGTGAGGGAATATTAGATTCTTGTATTTTTTTCTACTACATCAATGAGGAGTCTCTTTCTTCGTTCCTGTTGAGGCTCTCGTTCTGTTTTGCTGGTAATGTCACACTCCAATTAGTAAGGAGCTAGCGTTGCATGCTACATATATACTATATCTATCTTGTTATTCCTTTACTGAGTTTTGCCACTCATTTTTTCTTGCTTTCCCTTTGTTTTCTTCTTAAATCAATTTTTTTCCGTCTGATCAGTACACCACTTATGATGGACTGGGTGAATAAAATGTCACTGGTAAAGATGAAGATGTGGTGTTTGATAAGTTTGTAAGTAGAAACTGGTGCGCTTGTAGGTGCCTGAATTCTCTAAGCCCTTCTTGCTGTATATCTGCTTGTCATTTTCCGTGTACATTGCGGTTTTGATGTTTTCTTTTCAATATTGTTGATAGTTTCTTCTGCTTTGCATTAGTATATTGCCAAAATGTTGACACCAAAGTTAACAATCATAAGGCATAACTGCTGAAAGTGTTCTTGAGATGACTTTTTAGTATTGGGGTCTTCTTATTAAAATTCACTTTTTTCTCATTGTTGGGTATGGTGTTGGATGGGTGGATGATACAGTTTCCAGTGGGAAGGGTTCACCGGCAACTAAAGACAAGGGTTGCCGCAAATGGACGAGTCGGGGCTACAGCAGCCGTATACACAGCAGCTATCTTGGAGTACCTGACTGCAGAGGTGTTGGAGCTGGCCGGAAATGCTAGCAAGGATCTGAAGGTGAAGCGTATAACACCAAGGCATCTGCAGCTCGCAATAAGAGGAGATGAAGAACTGGACACACTCATTAAAGGAACCATCGCTGGCGGAGGAGTCATCCCTCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAGAGATTATTAGTATGCCTTTTTATTTTTCATCTTACAGCTTAGTTGAGTGGTTGTCATTGTCATATGCTCAGTCCTGTCACTGTCTGGTCCAATTTAGTAGCAAGGGGAGAAGATATTTCTCGTTTTGTAAGGTTAAAGAATGGGAAATCCCTTTTATTTTTAGTCATTTCTGACTTCGGGTTGCATCGATCGACACTGCCAATGTAATTGACGACTCACATTATTTGTCTACTTACTTAACATAACATCTGCCCAATTCATTGCTGGAAGAAGAAGATAAGGAATTAAGTGAAGACAGTTTGGAAA

mRNA sequence

TGGGGGGGGAGGGTACACTACTTTTATCGACCTCGCTCGCCGTCGCGCCCCTTATCGGTTTCTTTCTCTTTCTCTTCCATTGATCCGTCGTCCAAACTCCTCCTTCACTGAAAGCGAGAGGAACCCTAATTTTTGGGCTGCAAAAATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGACAAAGATAAAAAGAAACCTGTCTCTCGCTCTTCCCGCGCTGGTCTCCAGTTTCCAGTGGGAAGGGTTCACCGGCAACTAAAGACAAGGGTTGCCGCAAATGGACGAGTCGGGGCTACAGCAGCCGTATACACAGCAGCTATCTTGGAGTACCTGACTGCAGAGGTGTTGGAGCTGGCCGGAAATGCTAGCAAGGATCTGAAGGTGAAGCGTATAACACCAAGGCATCTGCAGCTCGCAATAAGAGGAGATGAAGAACTGGACACACTCATTAAAGGAACCATCGCTGGCGGAGGAGTCATCCCTCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAGAGATTATTAGTATGCCTTTTTATTTTTCATCTTACAGCTTAGTTGAGTGGTTGTCATTGTCATATGCTCAGTCCTGTCACTGTCTGGTCCAATTTAGTAGCAAGGGGAGAAGATATTTCTCGTTTTGTAAGGTTAAAGAATGGGAAATCCCTTTTATTTTTAGTCATTTCTGACTTCGGGTTGCATCGATCGACACTGCCAATGTAATTGACGACTCACATTATTTGTCTACTTACTTAACATAACATCTGCCCAATTCATTGCTGGAAGAAGAAGATAAGGAATTAAGTGAAGACAGTTTGGAAA

Coding sequence (CDS)

ATGTCGGGGAAGGGAGCCAAGGGTCTGATAATGGGCAAATCTGCCTCCAACAACAAGGACAAAGATAAAAAGAAACCTGTCTCTCGCTCTTCCCGCGCTGGTCTCCAGTTTCCAGTGGGAAGGGTTCACCGGCAACTAAAGACAAGGGTTGCCGCAAATGGACGAGTCGGGGCTACAGCAGCCGTATACACAGCAGCTATCTTGGAGTACCTGACTGCAGAGGTGTTGGAGCTGGCCGGAAATGCTAGCAAGGATCTGAAGGTGAAGCGTATAACACCAAGGCATCTGCAGCTCGCAATAAGAGGAGATGAAGAACTGGACACACTCATTAAAGGAACCATCGCTGGCGGAGGAGTCATCCCTCACATCCACAAGTCACTCATTAACAAATCCTCCAAGGAATAG
Homology
[Close]
BLAST of CmoCh17G008090 vs. Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.9e-60
Identity = 121/134 (90.30%), Postives = 129/134 (96.27%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQFPVGRVHR LKTR  A+GRVGATA
Sbjct: 1   MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKS+KE
Sbjct: 121 PHIHKSLINKSAKE 134

[Close]
BLAST of CmoCh17G008090 vs. Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 3.0e-58
Identity = 116/136 (85.29%), Postives = 130/136 (95.59%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKS--ASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGA 60
           M+GKG KGL+  K+  A+ +KDKDKKKP+SRS+RAG+QFPVGR+HRQLKTRV+A+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSLINK++KE
Sbjct: 121 VIPHIHKSLINKTTKE 136

[Close]
BLAST of CmoCh17G008090 vs. Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.6e-56
Identity = 118/137 (86.13%), Postives = 123/137 (89.78%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSA---SNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVG 60
           M+GKG KGL+  K+    S  KDK KK PVSRSSRAGLQFPVGR+HRQLK R  ANGRVG
Sbjct: 1   MAGKGGKGLLAAKTTAAKSAEKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVG 60

Query: 61  ATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120
           ATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG
Sbjct: 61  ATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGG 120

Query: 121 GVIPHIHKSLINKSSKE 135
           GVIPHIHKSLINKSSKE
Sbjct: 121 GVIPHIHKSLINKSSKE 137

[Close]
BLAST of CmoCh17G008090 vs. Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.6e-56
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKS----ASNNKDKDKKK-PVSRSSRAGLQFPVGRVHRQLKTRVAANGR 60
           M+GKG KGL+  K+    A+ +KDKD+KK PVSRSSRAG+QFPVGR+HRQLK RV+ANGR
Sbjct: 1   MAGKGGKGLLAAKTTAAKAAADKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGR 60

Query: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120
           VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA
Sbjct: 61  VGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIA 120

Query: 121 GGGVIPHIHKSLINKSSKE 135
           GGGVIPHIHKSLINK++KE
Sbjct: 121 GGGVIPHIHKSLINKTAKE 139

[Close]
BLAST of CmoCh17G008090 vs. Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.8e-56
Identity = 118/138 (85.51%), Postives = 128/138 (92.75%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSA---SNNKDKDKKK-PVSRSSRAGLQFPVGRVHRQLKTRVAANGRV 60
           M+GKG KGL+  K+    S +KDKDKKK PVSRSSRAGLQFPVGR+HRQLK+R +A+GRV
Sbjct: 1   MAGKGGKGLLAAKTTAAKSADKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRV 60

Query: 61  GATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120
           GATAAVY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG
Sbjct: 61  GATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAG 120

Query: 121 GGVIPHIHKSLINKSSKE 135
           GGVIPHIHKSLINK+SKE
Sbjct: 121 GGVIPHIHKSLINKTSKE 138

[Close]
BLAST of CmoCh17G008090 vs. TrEMBL
Match: A0A0A0K6F6_CUCSA (Histone H2A OS=Cucumis sativus GN=Csa_7G433390 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 5.7e-64
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of CmoCh17G008090 vs. TrEMBL
Match: A0A059AJB9_EUCGR (Histone H2A OS=Eucalyptus grandis GN=EUGRSUZ_J03033 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 9.7e-64
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSASN+KDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNSKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of CmoCh17G008090 vs. TrEMBL
Match: A0A067KLN0_JATCU (Histone H2A OS=Jatropha curcas GN=JCGZ_06207 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 9.0e-62
Identity = 129/134 (96.27%), Postives = 130/134 (97.01%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLI GKS  NNKDKDKKKPVSRSSRAGLQFPVGRVHR LKTRV+ANGRVGATA
Sbjct: 1   MSGKGAKGLITGKSTLNNKDKDKKKPVSRSSRAGLQFPVGRVHRLLKTRVSANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of CmoCh17G008090 vs. TrEMBL
Match: A5AKG7_VITVI (Histone H2A OS=Vitis vinifera GN=VITISV_002812 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.3e-60
Identity = 128/136 (94.12%), Postives = 132/136 (97.06%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAS--NNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGA 60
           MSGKGAKGLIMGKS++   NKDKDKKKP+SRSSRAGLQFPVGRVHR LKTRV+ANGRVGA
Sbjct: 1   MSGKGAKGLIMGKSSTLNGNKDKDKKKPISRSSRAGLQFPVGRVHRLLKTRVSANGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSLINKSSKE
Sbjct: 121 VIPHIHKSLINKSSKE 136

[Close]
BLAST of CmoCh17G008090 vs. TrEMBL
Match: B9RUZ2_RICCO (Histone H2A OS=Ricinus communis GN=RCOM_0897270 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.2e-60
Identity = 129/135 (95.56%), Postives = 130/135 (96.30%), Query Frame = 1 

Query: 1   MSGKGAKGLIM-GKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGAT 60
           MSGKGAKGLI  GKS  NNKDKDKKKPVSRSSRAGLQFPVGRVHR LKTRV+ANGRVGAT
Sbjct: 1   MSGKGAKGLITAGKSTLNNKDKDKKKPVSRSSRAGLQFPVGRVHRLLKTRVSANGRVGAT 60

Query: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120
           AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV
Sbjct: 61  AAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGV 120

Query: 121 IPHIHKSLINKSSKE 135
           IPHIHKSLINKSSKE
Sbjct: 121 IPHIHKSLINKSSKE 135

[Close]
BLAST of CmoCh17G008090 vs. TAIR10
Match: AT1G52740.1 (AT1G52740.1 histone H2A protein 9)

HSP 1 Score: 233.0 bits (593), Expect = 1.1e-61
Identity = 121/134 (90.30%), Postives = 129/134 (96.27%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGK + ++KDKDKKKP++RSSRAGLQFPVGRVHR LKTR  A+GRVGATA
Sbjct: 1   MSGKGAKGLIMGKPSGSDKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKS+KE
Sbjct: 121 PHIHKSLINKSAKE 134

[Close]
BLAST of CmoCh17G008090 vs. TAIR10
Match: AT3G54560.1 (AT3G54560.1 histone H2A 11)

HSP 1 Score: 225.7 bits (574), Expect = 1.7e-59
Identity = 116/136 (85.29%), Postives = 130/136 (95.59%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKS--ASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGA 60
           M+GKG KGL+  K+  A+ +KDKDKKKP+SRS+RAG+QFPVGR+HRQLKTRV+A+GRVGA
Sbjct: 1   MAGKGGKGLVAAKTMAANKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSLINK++KE
Sbjct: 121 VIPHIHKSLINKTTKE 136

[Close]
BLAST of CmoCh17G008090 vs. TAIR10
Match: AT2G38810.1 (AT2G38810.1 histone H2A 8)

HSP 1 Score: 214.2 bits (544), Expect = 5.1e-56
Identity = 112/136 (82.35%), Postives = 125/136 (91.91%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKS--ASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGA 60
           M+GKG KGL+  K+  A+ NKD  KKK +SRSSRAG+QFPVGR+HRQLK RV+A+GRVGA
Sbjct: 1   MAGKGGKGLLAAKTTAAAANKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTA+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSL+NK +K+
Sbjct: 121 VIPHIHKSLVNKVTKD 136

[Close]
BLAST of CmoCh17G008090 vs. TAIR10
Match: AT4G13570.2 (AT4G13570.2 histone H2A 4)

HSP 1 Score: 137.1 bits (344), Expect = 7.9e-33
Identity = 68/90 (75.56%), Postives = 76/90 (84.44%), Query Frame = 1 

Query: 35  LQFPVGRVHRQLKTRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPR 94
           ++F V R+H+QLK RV+A+  VGAT  VY  +ILEYLT EVL+LA N SKDLKVKRITPR
Sbjct: 35  IRFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPR 94

Query: 95  HLQLAIRGDEELDTLIKGTIAGGGVIPHIH 125
           HLQLAIRGDEELDTLIKGTI GG VIPHIH
Sbjct: 95  HLQLAIRGDEELDTLIKGTIIGGSVIPHIH 124

[Close]
BLAST of CmoCh17G008090 vs. TAIR10
Match: AT1G08880.1 (AT1G08880.1 Histone superfamily protein)

HSP 1 Score: 121.3 bits (303), Expect = 4.5e-28
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 1 

Query: 25  KPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATAAVYTAAILEYLTAEVLELAGNASK 84
           K VSRSS+AGLQFPVGR+ R LK+   A  RVGA A VY +A+LEYL AEVLELAGNA++
Sbjct: 21  KSVSRSSKAGLQFPVGRIARFLKSGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAAR 80

Query: 85  DLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI 129
           D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+
Sbjct: 81  DNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 124

[Close]
BLAST of CmoCh17G008090 vs. NCBI nr
Match: gi|449436104|ref|XP_004135834.1| (PREDICTED: probable histone H2A variant 3 [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 8.1e-64
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of CmoCh17G008090 vs. NCBI nr
Match: gi|659122306|ref|XP_008461070.1| (PREDICTED: probable histone H2A variant 3 [Cucumis melo])

HSP 1 Score: 251.5 bits (641), Expect = 8.1e-64
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSA+NNKDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 76  MSGKGAKGLIMGKSAANNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 135

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 136 AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 195

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 196 PHIHKSLINKSSKE 209

[Close]
BLAST of CmoCh17G008090 vs. NCBI nr
Match: gi|702484189|ref|XP_010033915.1| (PREDICTED: probable histone H2A variant 3 [Eucalyptus grandis])

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-63
Identity = 132/134 (98.51%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLIMGKSASN+KDKDKKKPVSRSSRAGLQFPVGRVHRQLK+RVAANGRVGATA
Sbjct: 1   MSGKGAKGLIMGKSASNSKDKDKKKPVSRSSRAGLQFPVGRVHRQLKSRVAANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of CmoCh17G008090 vs. NCBI nr
Match: gi|802603778|ref|XP_012073265.1| (PREDICTED: probable histone H2A variant 3 [Jatropha curcas])

HSP 1 Score: 244.2 bits (622), Expect = 1.3e-61
Identity = 129/134 (96.27%), Postives = 130/134 (97.01%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSASNNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGATA 60
           MSGKGAKGLI GKS  NNKDKDKKKPVSRSSRAGLQFPVGRVHR LKTRV+ANGRVGATA
Sbjct: 1   MSGKGAKGLITGKSTLNNKDKDKKKPVSRSSRAGLQFPVGRVHRLLKTRVSANGRVGATA 60

Query: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120
           AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI
Sbjct: 61  AVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVI 120

Query: 121 PHIHKSLINKSSKE 135
           PHIHKSLINKSSKE
Sbjct: 121 PHIHKSLINKSSKE 134

[Close]
BLAST of CmoCh17G008090 vs. NCBI nr
Match: gi|225442801|ref|XP_002285266.1| (PREDICTED: probable histone H2A variant 3 [Vitis vinifera])

HSP 1 Score: 240.4 bits (612), Expect = 1.9e-60
Identity = 128/136 (94.12%), Postives = 132/136 (97.06%), Query Frame = 1 

Query: 1   MSGKGAKGLIMGKSAS--NNKDKDKKKPVSRSSRAGLQFPVGRVHRQLKTRVAANGRVGA 60
           MSGKGAKGLIMGKS++   NKDKDKKKP+SRSSRAGLQFPVGRVHR LKTRV+ANGRVGA
Sbjct: 1   MSGKGAKGLIMGKSSTLNGNKDKDKKKPISRSSRAGLQFPVGRVHRLLKTRVSANGRVGA 60

Query: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120
           TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG
Sbjct: 61  TAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGG 120

Query: 121 VIPHIHKSLINKSSKE 135
           VIPHIHKSLINKSSKE
Sbjct: 121 VIPHIHKSLINKSSKE 136

The following BLAST results are available for this feature:
BLAST of CmoCh17G008090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
H2AV3_ARATH1.9e-6090.30Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1[more]
H2AV1_ARATH3.0e-5885.29Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1[more]
H2AV3_ORYSJ1.6e-5686.13Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 P... [more]
H2AV2_ORYSJ1.6e-5684.89Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 P... [more]
H2AV1_ORYSJ2.8e-5685.51Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 P... [more]
BLAST of CmoCh17G008090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6F6_CUCSA5.7e-6498.51Histone H2A OS=Cucumis sativus GN=Csa_7G433390 PE=3 SV=1[more]
A0A059AJB9_EUCGR9.7e-6498.51Histone H2A OS=Eucalyptus grandis GN=EUGRSUZ_J03033 PE=3 SV=1[more]
A0A067KLN0_JATCU9.0e-6296.27Histone H2A OS=Jatropha curcas GN=JCGZ_06207 PE=3 SV=1[more]
A5AKG7_VITVI1.3e-6094.12Histone H2A OS=Vitis vinifera GN=VITISV_002812 PE=3 SV=1[more]
B9RUZ2_RICCO2.2e-6095.56Histone H2A OS=Ricinus communis GN=RCOM_0897270 PE=3 SV=1[more]
BLAST of CmoCh17G008090 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G52740.11.1e-6190.30 histone H2A protein 9[more]
AT3G54560.11.7e-5985.29 histone H2A 11[more]
AT2G38810.15.1e-5682.35 histone H2A 8[more]
AT4G13570.27.9e-3375.56 histone H2A 4[more]
AT1G08880.14.5e-2863.81 Histone superfamily protein[more]
BLAST of CmoCh17G008090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449436104|ref|XP_004135834.1|8.1e-6498.51PREDICTED: probable histone H2A variant 3 [Cucumis sativus][more]
gi|659122306|ref|XP_008461070.1|8.1e-6498.51PREDICTED: probable histone H2A variant 3 [Cucumis melo][more]
gi|702484189|ref|XP_010033915.1|1.4e-6398.51PREDICTED: probable histone H2A variant 3 [Eucalyptus grandis][more]
gi|802603778|ref|XP_012073265.1|1.3e-6196.27PREDICTED: probable histone H2A variant 3 [Jatropha curcas][more]
gi|225442801|ref|XP_002285266.1|1.9e-6094.12PREDICTED: probable histone H2A variant 3 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002119Histone_H2A
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006338 chromatin remodeling
biological_process GO:0042742 defense response to bacterium
biological_process GO:0044030 regulation of DNA methylation
biological_process GO:0009909 regulation of flower development
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0008150 biological_process
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
cellular_component GO:0005773 vacuole
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G008090.1CmoCh17G008090.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 70..83
score: 1.3E-42coord: 55..70
score: 1.3E-42coord: 111..129
score: 1.3E-42coord: 25..47
score: 1.3E-42coord: 84..98
score: 1.3
IPR002119Histone H2ASMARTSM00414h2a4coord: 14..134
score: 3.1
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 17..103
score: 2.6
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 18..133
score: 1.2
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 4..111
score: 8.18
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 1..130
score: 1.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G008090Cucsa.004660Cucumber (Gy14) v1cgycmoB0080
CmoCh17G008090CmaCh17G008380Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G008090CmaCh08G006360Cucurbita maxima (Rimu)cmacmoB890
CmoCh17G008090Cla015397Watermelon (97103) v1cmowmB322
CmoCh17G008090Csa7G433390Cucumber (Chinese Long) v2cmocuB378
CmoCh17G008090MELO3C023389Melon (DHL92) v3.5.1cmomeB318
CmoCh17G008090ClCG09G002550Watermelon (Charleston Gray)cmowcgB299
CmoCh17G008090CSPI07G20930Wild cucumber (PI 183967)cmocpiB381
CmoCh17G008090Lsi02G027440Bottle gourd (USVL1VR-Ls)cmolsiB337
CmoCh17G008090Cp4.1LG12g07720Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G008090Cp4.1LG17g09080Cucurbita pepo (Zucchini)cmocpeB353
CmoCh17G008090MELO3C023389.2Melon (DHL92) v3.6.1cmomedB365
CmoCh17G008090CsaV3_7G032770Cucumber (Chinese Long) v3cmocucB0455
CmoCh17G008090Cla97C09G164690Watermelon (97103) v2cmowmbB370
CmoCh17G008090Bhi09G000053Wax gourdcmowgoB0491
CmoCh17G008090CsGy7G019170Cucumber (Gy14) v2cgybcmoB909
CmoCh17G008090Carg09564Silver-seed gourdcarcmoB1376
CmoCh17G008090Carg23163Silver-seed gourdcarcmoB0197
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh17G008090CmoCh08G006240Cucurbita moschata (Rifu)cmocmoB312
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G008090Cucurbita pepo (Zucchini)cmocpeB339
CmoCh17G008090Cucurbita pepo (Zucchini)cmocpeB361
CmoCh17G008090Bottle gourd (USVL1VR-Ls)cmolsiB349
CmoCh17G008090Silver-seed gourdcarcmoB0198
CmoCh17G008090Silver-seed gourdcarcmoB0284
CmoCh17G008090Silver-seed gourdcarcmoB1313
CmoCh17G008090Watermelon (97103) v2cmowmbB365
CmoCh17G008090Cucurbita moschata (Rifu)cmocmoB195
CmoCh17G008090Cucurbita moschata (Rifu)cmocmoB299
CmoCh17G008090Cucurbita maxima (Rimu)cmacmoB249
CmoCh17G008090Cucurbita maxima (Rimu)cmacmoB466
CmoCh17G008090Watermelon (Charleston Gray)cmowcgB329
CmoCh17G008090Watermelon (97103) v1cmowmB335