Csa7G394030 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G394030
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 14997089 .. 14997441 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGCAATAATCAAATTATTTGTCTACGTAGCAATTGTAGTTGCACTTCTCTTGCTCTCCAAACCTATCTCGACTTCTGCTGTCGATCACGATGAGATTTCCAACTCTAATAATGGAATACTTCGTCGAAATGTCATTCAGACAACGAATCGTCATGAAGTTGGAAATGGATATCAATACTCTGTTAAAGACGAAGATACCAATCAAGATGGGCATAAACAATCTGCAAAGAAAGCTCATTGTCTAAATAAAAAATCGCTGGCCAATCGTAGTGGAACAATGTTATTTGGGGTTGGGCCTTTGGTATGTTTTAGTATTGTTTATGGTTTCTTTATTTGAAGGTGAAGTGA

mRNA sequence

ATGGGTGCAATAATCAAATTATTTGTCTACGTAGCAATTGTAGTTGCACTTCTCTTGCTCTCCAAACCTATCTCGACTTCTGCTGTCGATCACGATGAGATTTCCAACTCTAATAATGGAATACTTCGTCGAAATGTCATTCAGACAACGAATCGTCATGAAGTTGGAAATGGATATCAATACTCTGTTAAAGACGAAGATACCAATCAAGATGGGCATAAACAATCTGCAAAGAAAGCTCATTGTCTAAATAAAAAATCGCTGGCCAATCGTAGTGGAACAATGTTATTTGGGGTTGGGCCTTTGGTGAAGTGA

Coding sequence (CDS)

ATGGGTGCAATAATCAAATTATTTGTCTACGTAGCAATTGTAGTTGCACTTCTCTTGCTCTCCAAACCTATCTCGACTTCTGCTGTCGATCACGATGAGATTTCCAACTCTAATAATGGAATACTTCGTCGAAATGTCATTCAGACAACGAATCGTCATGAAGTTGGAAATGGATATCAATACTCTGTTAAAGACGAAGATACCAATCAAGATGGGCATAAACAATCTGCAAAGAAAGCTCATTGTCTAAATAAAAAATCGCTGGCCAATCGTAGTGGAACAATGTTATTTGGGGTTGGGCCTTTGGTGAAGTGA

Protein sequence

MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQYSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLVK*

Homology

[Close]

BLAST of Csa7G394030 vs. TrEMBL
Match: A0A0A0K5W7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394030 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 7.3e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 1   MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQ 60
           MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQ
Sbjct: 1   MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQ 60

Query: 61  YSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLVK 105
           YSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLVK
Sbjct: 61  YSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLVK 104

[Close]

BLAST of Csa7G394030 vs. TrEMBL
Match: A0A0A0K580_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394050 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.5e-30
Identity = 68/103 (66.02%), Postives = 81/103 (78.64%), Query Frame = 1


Query: 1   MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQ 60
           MGAIIK  V +A+V  LLLLSKP+ST  VDH+EISNSNN +L R  +Q T+ H++ NGYQ
Sbjct: 1   MGAIIKYLVSIALVATLLLLSKPVSTFVVDHEEISNSNNIMLLRKSLQVTDGHQIANGYQ 60

Query: 61  YSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLV 104
            S+KDEDT +D HK+  KKAHC NKKSLANR GTMLFGVG L+
Sbjct: 61  NSLKDEDTKKDEHKEPPKKAHCPNKKSLANRGGTMLFGVGSLL 103

[Close]

BLAST of Csa7G394030 vs. NCBI nr
Match: gi|700189650|gb|KGN44883.1| (hypothetical protein Csa_7G394030 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-50
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 1   MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQ 60
           MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQ
Sbjct: 1   MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQ 60

Query: 61  YSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLVK 105
           YSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLVK
Sbjct: 61  YSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLVK 104

[Close]

BLAST of Csa7G394030 vs. NCBI nr
Match: gi|700189652|gb|KGN44885.1| (hypothetical protein Csa_7G394050 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 3.5e-30
Identity = 68/103 (66.02%), Postives = 81/103 (78.64%), Query Frame = 1


Query: 1   MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQ 60
           MGAIIK  V +A+V  LLLLSKP+ST  VDH+EISNSNN +L R  +Q T+ H++ NGYQ
Sbjct: 1   MGAIIKYLVSIALVATLLLLSKPVSTFVVDHEEISNSNNIMLLRKSLQVTDGHQIANGYQ 60

Query: 61  YSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLV 104
            S+KDEDT +D HK+  KKAHC NKKSLANR GTMLFGVG L+
Sbjct: 61  NSLKDEDTKKDEHKEPPKKAHCPNKKSLANRGGTMLFGVGSLL 103

The following BLAST results are available for this feature:

BLAST of Csa7G394030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5W7_CUCSA	7.3e-51	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394030 PE=4 SV=1	[more]
A0A0A0K580_CUCSA	2.5e-30	66.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394050 PE=4 SV=1	[more]

BLAST of Csa7G394030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189650\|gb\|KGN44883.1\|	1.1e-50	100.00	hypothetical protein Csa_7G394030 [Cucumis sativus]	[more]
gi\|700189652\|gb\|KGN44885.1\|	3.5e-30	66.02	hypothetical protein Csa_7G394050 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0045454	cell redox homeostasis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU085616	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G394030.1	Csa7G394030.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU085616	CU085616	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G394030	ClCG09G006380	Watermelon (Charleston Gray)	cuwcgB526
Csa7G394030	CSPI07G17000	Wild cucumber (PI 183967)	cpicuB354
Csa7G394030	CsGy7G015450	Cucumber (Gy14) v2	cgybcuB323

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G394030	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G394030	Silver-seed gourd	carcuB0119
Csa7G394030	Silver-seed gourd	carcuB0876
Csa7G394030	Watermelon (97103) v2	cuwmbB539
Csa7G394030	Watermelon (97103) v2	cuwmbB572
Csa7G394030	Wax gourd	cuwgoB653
Csa7G394030	Wax gourd	cuwgoB657
Csa7G394030	Cucumber (Gy14) v1	cgycuB519
Csa7G394030	Cucurbita maxima (Rimu)	cmacuB388
Csa7G394030	Cucurbita maxima (Rimu)	cmacuB914
Csa7G394030	Cucurbita moschata (Rifu)	cmocuB378
Csa7G394030	Cucurbita moschata (Rifu)	cmocuB900
Csa7G394030	Watermelon (97103) v1	cuwmB568
Csa7G394030	Watermelon (97103) v1	cuwmB588
Csa7G394030	Cucurbita pepo (Zucchini)	cpecuB161
Csa7G394030	Cucurbita pepo (Zucchini)	cpecuB343