Csa7G394030.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa7G394030.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 14997089 .. 14997441 (-)
Sequence length315
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGCAATAATCAAATTATTTGTCTACGTAGCAATTGTAGTTGCACTTCTCTTGCTCTCCAAACCTATCTCGACTTCTGCTGTCGATCACGATGAGATTTCCAACTCTAATAATGGAATACTTCGTCGAAATGTCATTCAGACAACGAATCGTCATGAAGTTGGAAATGGATATCAATACTCTGTTAAAGACGAAGATACCAATCAAGATGGGCATAAACAATCTGCAAAGAAAGCTCATTGTCTAAATAAAAAATCGCTGGCCAATCGTAGTGGAACAATGTTATTTGGGGTTGGGCCTTTGGTATGTTTTAGTATTGTTTATGGTTTCTTTATTTGAAGGTGAAGTGA

mRNA sequence

ATGGGTGCAATAATCAAATTATTTGTCTACGTAGCAATTGTAGTTGCACTTCTCTTGCTCTCCAAACCTATCTCGACTTCTGCTGTCGATCACGATGAGATTTCCAACTCTAATAATGGAATACTTCGTCGAAATGTCATTCAGACAACGAATCGTCATGAAGTTGGAAATGGATATCAATACTCTGTTAAAGACGAAGATACCAATCAAGATGGGCATAAACAATCTGCAAAGAAAGCTCATTGTCTAAATAAAAAATCGCTGGCCAATCGTAGTGGAACAATGTTATTTGGGGTTGGGCCTTTGGTGAAGTGA

Coding sequence (CDS)

ATGGGTGCAATAATCAAATTATTTGTCTACGTAGCAATTGTAGTTGCACTTCTCTTGCTCTCCAAACCTATCTCGACTTCTGCTGTCGATCACGATGAGATTTCCAACTCTAATAATGGAATACTTCGTCGAAATGTCATTCAGACAACGAATCGTCATGAAGTTGGAAATGGATATCAATACTCTGTTAAAGACGAAGATACCAATCAAGATGGGCATAAACAATCTGCAAAGAAAGCTCATTGTCTAAATAAAAAATCGCTGGCCAATCGTAGTGGAACAATGTTATTTGGGGTTGGGCCTTTGGTGAAGTGA

Protein sequence

MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQYSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLVK*
Homology
[Close]
BLAST of Csa7G394030.1 vs. TrEMBL
Match: A0A0A0K5W7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394030 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 7.3e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQ 60
           MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQ
Sbjct: 1   MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQ 60

Query: 61  YSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLVK 105
           YSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLVK
Sbjct: 61  YSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLVK 104

[Close]
BLAST of Csa7G394030.1 vs. TrEMBL
Match: A0A0A0K580_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394050 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.5e-30
Identity = 68/103 (66.02%), Postives = 81/103 (78.64%), Query Frame = 1 

Query: 1   MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQ 60
           MGAIIK  V +A+V  LLLLSKP+ST  VDH+EISNSNN +L R  +Q T+ H++ NGYQ
Sbjct: 1   MGAIIKYLVSIALVATLLLLSKPVSTFVVDHEEISNSNNIMLLRKSLQVTDGHQIANGYQ 60

Query: 61  YSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLV 104
            S+KDEDT +D HK+  KKAHC NKKSLANR GTMLFGVG L+
Sbjct: 61  NSLKDEDTKKDEHKEPPKKAHCPNKKSLANRGGTMLFGVGSLL 103

[Close]
BLAST of Csa7G394030.1 vs. NCBI nr
Match: gi|700189650|gb|KGN44883.1| (hypothetical protein Csa_7G394030 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-50
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQ 60
           MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQ
Sbjct: 1   MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQ 60

Query: 61  YSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLVK 105
           YSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLVK
Sbjct: 61  YSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLVK 104

[Close]
BLAST of Csa7G394030.1 vs. NCBI nr
Match: gi|700189652|gb|KGN44885.1| (hypothetical protein Csa_7G394050 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 3.5e-30
Identity = 68/103 (66.02%), Postives = 81/103 (78.64%), Query Frame = 1 

Query: 1   MGAIIKLFVYVAIVVALLLLSKPISTSAVDHDEISNSNNGILRRNVIQTTNRHEVGNGYQ 60
           MGAIIK  V +A+V  LLLLSKP+ST  VDH+EISNSNN +L R  +Q T+ H++ NGYQ
Sbjct: 1   MGAIIKYLVSIALVATLLLLSKPVSTFVVDHEEISNSNNIMLLRKSLQVTDGHQIANGYQ 60

Query: 61  YSVKDEDTNQDGHKQSAKKAHCLNKKSLANRSGTMLFGVGPLV 104
            S+KDEDT +D HK+  KKAHC NKKSLANR GTMLFGVG L+
Sbjct: 61  NSLKDEDTKKDEHKEPPKKAHCPNKKSLANRGGTMLFGVGSLL 103

The following BLAST results are available for this feature:
BLAST of Csa7G394030.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5W7_CUCSA7.3e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394030 PE=4 SV=1[more]
A0A0A0K580_CUCSA2.5e-3066.02Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394050 PE=4 SV=1[more]
BLAST of Csa7G394030.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189650|gb|KGN44883.1|1.1e-50100.00hypothetical protein Csa_7G394030 [Cucumis sativus][more]
gi|700189652|gb|KGN44885.1|3.5e-3066.02hypothetical protein Csa_7G394050 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa7G394030Csa7G394030gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa7G394030.1Csa7G394030.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa7G394030.1.cds2Csa7G394030.1.cds2CDS
Csa7G394030.1.cds1Csa7G394030.1.cds1CDS