Csa7G290600 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G290600
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 10206717 .. 10207346 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCTGGCATGTCTTGTATGTAATAGCGTAGAGAGCCCTTCACACTCATTCAGGAGCTATTCGGTTTCGAGTTCAGACAATGAGGGAAGATGTTCTGCAATGGCTAACTGCCTAATATGGAGACCATCTTTTCCTCCAACACACCACCCGTCATATGCAGCATCAGCCAAGGTAACTCCCCAACCAACCATGTCCGACAGCGATGTAATGGACGGAACGCCAAGATTGGTGCGGAGCCGGGCAGTAAGAAGGGACCTAGTACGAGACTGGAATTTTGATGAGGTGGTTGTAGTTCAGCATTAGTACGTTTTACATTTGAGATAAGGAGGGCAACAGAGTAAGGTCTTCAAATGAACATGGGTGGTGATGACCTGAAATGATGGGAGGATAGCATCTTGCTTCCTATGTATTTTTGTTTTCTTATGGGTACAACTGAACTCACACTTCCATTGGAAGAGTTTGCACATTTGTAAGCATGAGAAAATGTGATTTAGAACTTTGTTTATATATAACCTAAATACTACTGATTCATAGGAGGCAAGGTTGGGATGGGTTTAATTACTTTTGTAAACTTGGATGGAATTATGCTTTAAAAAATTTTCCATGATATACACCAAGTTTATTTGC

mRNA sequence

ATGAGCCTGGCATGTCTTGTATGTAATAGCGTAGAGAGCCCTTCACACTCATTCAGGAGCTATTCGGTTTCGAGTTCAGACAATGAGGGAAGATGTTCTGCAATGGCTAACTGCCTAATATGGAGACCATCTTTTCCTCCAACACACCACCCGTCATATGCAGCATCAGCCAAGGTAACTCCCCAACCAACCATGTCCGACAGCGATGTAATGGACGGAACGCCAAGATTGGTGCGGAGCCGGGCAGTAAGAAGGGACCTAGTACGAGACTGGAATTTTGATGAGGTGGTTGTAGTTCAGCATTAG

Coding sequence (CDS)

ATGAGCCTGGCATGTCTTGTATGTAATAGCGTAGAGAGCCCTTCACACTCATTCAGGAGCTATTCGGTTTCGAGTTCAGACAATGAGGGAAGATGTTCTGCAATGGCTAACTGCCTAATATGGAGACCATCTTTTCCTCCAACACACCACCCGTCATATGCAGCATCAGCCAAGGTAACTCCCCAACCAACCATGTCCGACAGCGATGTAATGGACGGAACGCCAAGATTGGTGCGGAGCCGGGCAGTAAGAAGGGACCTAGTACGAGACTGGAATTTTGATGAGGTGGTTGTAGTTCAGCATTAG

Protein sequence

MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVTPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH*

Homology

[Close]

BLAST of Csa7G290600 vs. TrEMBL
Match: A0A0A0K7X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290600 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 2.9e-52
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60
           MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT
Sbjct: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60

Query: 61  PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 102
           PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH
Sbjct: 61  PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 101

[Close]

BLAST of Csa7G290600 vs. TrEMBL
Match: M5VPB2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013850mg PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.7e-34
Identity = 77/99 (77.78%), Postives = 87/99 (87.88%), Query Frame = 1


Query: 1  MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFP-PTHHPSYAASAKV 60
          MSLACLVC+SVESPSHSFRSYSVSS++NEGRCSA+ANCL  RPSFP PTH  S  AS+KV
Sbjct: 1  MSLACLVCHSVESPSHSFRSYSVSSAENEGRCSAIANCLARRPSFPLPTH--SNIASSKV 60

Query: 61 TPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVV 99
          TPQPT+ +S  M G PRLVRSRAVRRD+V+DWNFDEVV+
Sbjct: 61 TPQPTLPNSGSMSGAPRLVRSRAVRRDIVQDWNFDEVVM 97

[Close]

BLAST of Csa7G290600 vs. TrEMBL
Match: D7U5V7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0086g00230 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.7e-32
Identity = 73/99 (73.74%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFP-PTHHPSYAASAKV 60
           MSLACLVC+SVESPSHSFRSYSVSSSDNEGRCSA+ANCL  R S P PT + S   S+KV
Sbjct: 120 MSLACLVCHSVESPSHSFRSYSVSSSDNEGRCSAIANCLARRASLPAPTANSSIIRSSKV 179

Query: 61  TPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVV 99
           TP P++ +S  + GTPRLVRS AVRRD+VRDWNFDEVV+
Sbjct: 180 TPHPSIPNSSGIPGTPRLVRSCAVRRDIVRDWNFDEVVM 218

[Close]

BLAST of Csa7G290600 vs. TrEMBL
Match: B9MW51_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12040g PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.7e-32
Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 1  MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTH-HPSYAASAKV 60
          MSLACLVC+SVESPSHSFRSYSVSSSDNEGRCSA+ANC+  + S PP   + S+A+S+KV
Sbjct: 1  MSLACLVCHSVESPSHSFRSYSVSSSDNEGRCSAIANCITRKLSLPPPRANSSFASSSKV 60

Query: 61 TPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVV 99
          TPQP+   +D M G PRLVRSRAVRRDLVRDWNFD  V+
Sbjct: 61 TPQPSSPGNDDMTGPPRLVRSRAVRRDLVRDWNFDGFVM 99

[Close]

BLAST of Csa7G290600 vs. TrEMBL
Match: A0A061FSF0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_036639 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-31
Identity = 73/98 (74.49%), Postives = 81/98 (82.65%), Query Frame = 1


Query: 1  MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60
          MSLACLVC+SVESPSHSFRSYSVSSSDNEGRCSA+ANCL  R S  P   P+  +++KVT
Sbjct: 1  MSLACLVCHSVESPSHSFRSYSVSSSDNEGRCSAIANCLA-RKSSLPAGRPTIPSTSKVT 60

Query: 61 PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVV 99
          PQP   +S  M G PRLVRSRAVRRDLVRDWNFDEVV+
Sbjct: 61 PQPNFQNSVGMAGPPRLVRSRAVRRDLVRDWNFDEVVM 97

[Close]

BLAST of Csa7G290600 vs. TAIR10
Match: AT1G71865.1 (AT1G71865.1 unknown protein)

HSP 1 Score: 121.3 bits (303), Expect = 3.4e-28
Identity = 62/97 (63.92%), Postives = 72/97 (74.23%), Query Frame = 1


Query: 1  MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTH-HPSYAASAKV 60
          MS ACLVC+SVESPSHSFRSYSVSSSDNEGRCS +A+CL  +        +P  A+S+KV
Sbjct: 1  MSFACLVCHSVESPSHSFRSYSVSSSDNEGRCSVIASCLTRKSLIQAARSNPFPASSSKV 60

Query: 61 TPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEV 97
          TPQP     +    +PRLVRSRAVRRD+VRDWNF+E+
Sbjct: 61 TPQPNFQAGE--GASPRLVRSRAVRRDIVRDWNFNEI 95

[Close]

BLAST of Csa7G290600 vs. NCBI nr
Match: gi|449443867|ref|XP_004139697.1| (PREDICTED: uncharacterized protein LOC101218997 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 4.2e-52
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60
           MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT
Sbjct: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60

Query: 61  PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 102
           PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH
Sbjct: 61  PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 101

[Close]

BLAST of Csa7G290600 vs. NCBI nr
Match: gi|659123028|ref|XP_008461452.1| (PREDICTED: uncharacterized protein LOC103500045 [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 3.9e-50
Identity = 97/101 (96.04%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60
           MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT
Sbjct: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60

Query: 61  PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 102
           PQPT+S+S+VMDGTPRLVRSRAV+RDLVRDWNFDEVVVVQH
Sbjct: 61  PQPTISNSNVMDGTPRLVRSRAVKRDLVRDWNFDEVVVVQH 101

[Close]

BLAST of Csa7G290600 vs. NCBI nr
Match: gi|595801925|ref|XP_007201903.1| (hypothetical protein PRUPE_ppa013850mg [Prunus persica])

HSP 1 Score: 152.5 bits (384), Expect = 3.9e-34
Identity = 77/99 (77.78%), Postives = 87/99 (87.88%), Query Frame = 1


Query: 1  MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFP-PTHHPSYAASAKV 60
          MSLACLVC+SVESPSHSFRSYSVSS++NEGRCSA+ANCL  RPSFP PTH  S  AS+KV
Sbjct: 1  MSLACLVCHSVESPSHSFRSYSVSSAENEGRCSAIANCLARRPSFPLPTH--SNIASSKV 60

Query: 61 TPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVV 99
          TPQPT+ +S  M G PRLVRSRAVRRD+V+DWNFDEVV+
Sbjct: 61 TPQPTLPNSGSMSGAPRLVRSRAVRRDIVQDWNFDEVVM 97

[Close]

BLAST of Csa7G290600 vs. NCBI nr
Match: gi|657978182|ref|XP_008381021.1| (PREDICTED: uncharacterized protein LOC103443899 isoform X2 [Malus domestica])

HSP 1 Score: 146.4 bits (368), Expect = 2.8e-32
Identity = 75/98 (76.53%), Postives = 85/98 (86.73%), Query Frame = 1


Query: 1  MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60
          MSLACLVC SVESPSHSFRSYSVSS++N+GRCSA+ANCL  RPS P   H S  AS+KVT
Sbjct: 1  MSLACLVC-SVESPSHSFRSYSVSSTENDGRCSAIANCLTRRPSLPLPRH-SNIASSKVT 60

Query: 61 PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVV 99
          PQPT+S+S  + GTPRLVRSRAVRRD+VRDWNFDEVV+
Sbjct: 61 PQPTLSNSGSIPGTPRLVRSRAVRRDIVRDWNFDEVVM 96

[Close]

BLAST of Csa7G290600 vs. NCBI nr
Match: gi|694422487|ref|XP_009339072.1| (PREDICTED: uncharacterized protein LOC103931341 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 146.4 bits (368), Expect = 2.8e-32
Identity = 75/98 (76.53%), Postives = 85/98 (86.73%), Query Frame = 1


Query: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60
           MSLACLVC SVESPSHSFRSYSVSS++N+GRCSA+ANCL  RPS P   H S  AS+KVT
Sbjct: 60  MSLACLVC-SVESPSHSFRSYSVSSTENDGRCSAIANCLTRRPSLPLPRH-SNIASSKVT 119

Query: 61  PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVV 99
           PQPT+S+S  + GTPRLVRSRAVRRD+VRDWNFDEVV+
Sbjct: 120 PQPTLSNSGSIPGTPRLVRSRAVRRDIVRDWNFDEVVM 155

The following BLAST results are available for this feature:

BLAST of Csa7G290600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7X5_CUCSA	2.9e-52	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290600 PE=4 SV=1	[more]
M5VPB2_PRUPE	2.7e-34	77.78	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013850mg PE=4 SV=1	[more]
D7U5V7_VITVI	9.7e-32	73.74	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0086g00230 PE=4 SV=...	[more]
B9MW51_POPTR	9.7e-32	72.73	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12040g PE=4 SV=1	[more]
A0A061FSF0_THECC	2.2e-31	74.49	Uncharacterized protein OS=Theobroma cacao GN=TCM_036639 PE=4 SV=1	[more]

BLAST of Csa7G290600 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71865.1	3.4e-28	63.92	unknown protein	[more]

BLAST of Csa7G290600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443867\|ref\|XP_004139697.1\|	4.2e-52	100.00	PREDICTED: uncharacterized protein LOC101218997 [Cucumis sativus]	[more]
gi\|659123028\|ref\|XP_008461452.1\|	3.9e-50	96.04	PREDICTED: uncharacterized protein LOC103500045 [Cucumis melo]	[more]
gi\|595801925\|ref\|XP_007201903.1\|	3.9e-34	77.78	hypothetical protein PRUPE_ppa013850mg [Prunus persica]	[more]
gi\|657978182\|ref\|XP_008381021.1\|	2.8e-32	76.53	PREDICTED: uncharacterized protein LOC103443899 isoform X2 [Malus domestica]	[more]
gi\|694422487\|ref\|XP_009339072.1\|	2.8e-32	76.53	PREDICTED: uncharacterized protein LOC103931341 isoform X1 [Pyrus x bretschneide...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU106044	cucumber EST collection version 3.0	transcribed_cluster
CU134654	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G290600.1	Csa7G290600.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU134654	CU134654	transcribed_cluster
CU106044	CU106044	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36002	FAMILY NOT NAMED	coord: 1..100 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G290600	Cla016376	Watermelon (97103) v1	cuwmB567
Csa7G290600	MELO3C023649	Melon (DHL92) v3.5.1	cumeB542
Csa7G290600	ClCG09G010330	Watermelon (Charleston Gray)	cuwcgB525
Csa7G290600	Lsi02G019530	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G290600	MELO3C023649.2	Melon (DHL92) v3.6.1	cumedB503
Csa7G290600	Bhi09G001309	Wax gourd	cuwgoB707
Csa7G290600	CSPI07G12320	Wild cucumber (PI 183967)	cpicuB354
Csa7G290600	Cucsa.079850	Cucumber (Gy14) v1	cgycuB076
Csa7G290600	CmaCh01G009100	Cucurbita maxima (Rimu)	cmacuB500
Csa7G290600	CmaCh09G011550	Cucurbita maxima (Rimu)	cmacuB039
Csa7G290600	CmoCh01G009760	Cucurbita moschata (Rifu)	cmocuB478
Csa7G290600	Cp4.1LG02g09230	Cucurbita pepo (Zucchini)	cpecuB592
Csa7G290600	Cp4.1LG06g09210	Cucurbita pepo (Zucchini)	cpecuB801
Csa7G290600	CsGy7G011450	Cucumber (Gy14) v2	cgybcuB323

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G290600	Watermelon (97103) v2	cuwmbB571
Csa7G290600	Cucurbita maxima (Rimu)	cmacuB489
Csa7G290600	Cucurbita moschata (Rifu)	cmocuB029
Csa7G290600	Cucurbita moschata (Rifu)	cmocuB032