Csa7G290600.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G290600.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 10206717 .. 10207346 (-)
Sequence length	306

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCTGGCATGTCTTGTATGTAATAGCGTAGAGAGCCCTTCACACTCATTCAGGAGCTATTCGGTTTCGAGTTCAGACAATGAGGGAAGATGTTCTGCAATGGCTAACTGCCTAATATGGAGACCATCTTTTCCTCCAACACACCACCCGTCATATGCAGCATCAGCCAAGGTAACTCCCCAACCAACCATGTCCGACAGCGATGTAATGGACGGAACGCCAAGATTGGTGCGGAGCCGGGCAGTAAGAAGGGACCTAGTACGAGACTGGAATTTTGATGAGGTGGTTGTAGTTCAGCATTAGTACGTTTTACATTTGAGATAAGGAGGGCAACAGAGTAAGGTCTTCAAATGAACATGGGTGGTGATGACCTGAAATGATGGGAGGATAGCATCTTGCTTCCTATGTATTTTTGTTTTCTTATGGGTACAACTGAACTCACACTTCCATTGGAAGAGTTTGCACATTTGTAAGCATGAGAAAATGTGATTTAGAACTTTGTTTATATATAACCTAAATACTACTGATTCATAGGAGGCAAGGTTGGGATGGGTTTAATTACTTTTGTAAACTTGGATGGAATTATGCTTTAAAAAATTTTCCATGATATACACCAAGTTTATTTGC

mRNA sequence

ATGAGCCTGGCATGTCTTGTATGTAATAGCGTAGAGAGCCCTTCACACTCATTCAGGAGCTATTCGGTTTCGAGTTCAGACAATGAGGGAAGATGTTCTGCAATGGCTAACTGCCTAATATGGAGACCATCTTTTCCTCCAACACACCACCCGTCATATGCAGCATCAGCCAAGGTAACTCCCCAACCAACCATGTCCGACAGCGATGTAATGGACGGAACGCCAAGATTGGTGCGGAGCCGGGCAGTAAGAAGGGACCTAGTACGAGACTGGAATTTTGATGAGGTGGTTGTAGTTCAGCATTAG

Coding sequence (CDS)

ATGAGCCTGGCATGTCTTGTATGTAATAGCGTAGAGAGCCCTTCACACTCATTCAGGAGCTATTCGGTTTCGAGTTCAGACAATGAGGGAAGATGTTCTGCAATGGCTAACTGCCTAATATGGAGACCATCTTTTCCTCCAACACACCACCCGTCATATGCAGCATCAGCCAAGGTAACTCCCCAACCAACCATGTCCGACAGCGATGTAATGGACGGAACGCCAAGATTGGTGCGGAGCCGGGCAGTAAGAAGGGACCTAGTACGAGACTGGAATTTTGATGAGGTGGTTGTAGTTCAGCATTAG

Protein sequence

MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVTPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH*

Homology

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BLAST of Csa7G290600.1 vs. TrEMBL
Match: A0A0A0K7X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290600 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 2.9e-52
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60
           MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT
Sbjct: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60

Query: 61  PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 102
           PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH
Sbjct: 61  PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 101

[Close]

BLAST of Csa7G290600.1 vs. TrEMBL
Match: M5VPB2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013850mg PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.7e-34
Identity = 77/99 (77.78%), Postives = 87/99 (87.88%), Query Frame = 1


Query: 1  MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFP-PTHHPSYAASAKV 60
          MSLACLVC+SVESPSHSFRSYSVSS++NEGRCSA+ANCL  RPSFP PTH  S  AS+KV
Sbjct: 1  MSLACLVCHSVESPSHSFRSYSVSSAENEGRCSAIANCLARRPSFPLPTH--SNIASSKV 60

Query: 61 TPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVV 99
          TPQPT+ +S  M G PRLVRSRAVRRD+V+DWNFDEVV+
Sbjct: 61 TPQPTLPNSGSMSGAPRLVRSRAVRRDIVQDWNFDEVVM 97

[Close]

BLAST of Csa7G290600.1 vs. TrEMBL
Match: D7U5V7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0086g00230 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.7e-32
Identity = 73/99 (73.74%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFP-PTHHPSYAASAKV 60
           MSLACLVC+SVESPSHSFRSYSVSSSDNEGRCSA+ANCL  R S P PT + S   S+KV
Sbjct: 120 MSLACLVCHSVESPSHSFRSYSVSSSDNEGRCSAIANCLARRASLPAPTANSSIIRSSKV 179

Query: 61  TPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVV 99
           TP P++ +S  + GTPRLVRS AVRRD+VRDWNFDEVV+
Sbjct: 180 TPHPSIPNSSGIPGTPRLVRSCAVRRDIVRDWNFDEVVM 218

[Close]

BLAST of Csa7G290600.1 vs. TrEMBL
Match: B9MW51_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12040g PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.7e-32
Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 1  MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTH-HPSYAASAKV 60
          MSLACLVC+SVESPSHSFRSYSVSSSDNEGRCSA+ANC+  + S PP   + S+A+S+KV
Sbjct: 1  MSLACLVCHSVESPSHSFRSYSVSSSDNEGRCSAIANCITRKLSLPPPRANSSFASSSKV 60

Query: 61 TPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVV 99
          TPQP+   +D M G PRLVRSRAVRRDLVRDWNFD  V+
Sbjct: 61 TPQPSSPGNDDMTGPPRLVRSRAVRRDLVRDWNFDGFVM 99

[Close]

BLAST of Csa7G290600.1 vs. TrEMBL
Match: A0A061FSF0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_036639 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-31
Identity = 73/98 (74.49%), Postives = 81/98 (82.65%), Query Frame = 1


Query: 1  MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60
          MSLACLVC+SVESPSHSFRSYSVSSSDNEGRCSA+ANCL  R S  P   P+  +++KVT
Sbjct: 1  MSLACLVCHSVESPSHSFRSYSVSSSDNEGRCSAIANCLA-RKSSLPAGRPTIPSTSKVT 60

Query: 61 PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVV 99
          PQP   +S  M G PRLVRSRAVRRDLVRDWNFDEVV+
Sbjct: 61 PQPNFQNSVGMAGPPRLVRSRAVRRDLVRDWNFDEVVM 97

[Close]

BLAST of Csa7G290600.1 vs. TAIR10
Match: AT1G71865.1 (AT1G71865.1 unknown protein)

HSP 1 Score: 121.3 bits (303), Expect = 3.4e-28
Identity = 62/97 (63.92%), Postives = 72/97 (74.23%), Query Frame = 1


Query: 1  MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTH-HPSYAASAKV 60
          MS ACLVC+SVESPSHSFRSYSVSSSDNEGRCS +A+CL  +        +P  A+S+KV
Sbjct: 1  MSFACLVCHSVESPSHSFRSYSVSSSDNEGRCSVIASCLTRKSLIQAARSNPFPASSSKV 60

Query: 61 TPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEV 97
          TPQP     +    +PRLVRSRAVRRD+VRDWNF+E+
Sbjct: 61 TPQPNFQAGE--GASPRLVRSRAVRRDIVRDWNFNEI 95

[Close]

BLAST of Csa7G290600.1 vs. NCBI nr
Match: gi|449443867|ref|XP_004139697.1| (PREDICTED: uncharacterized protein LOC101218997 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 4.2e-52
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60
           MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT
Sbjct: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60

Query: 61  PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 102
           PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH
Sbjct: 61  PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 101

[Close]

BLAST of Csa7G290600.1 vs. NCBI nr
Match: gi|659123028|ref|XP_008461452.1| (PREDICTED: uncharacterized protein LOC103500045 [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 3.9e-50
Identity = 97/101 (96.04%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60
           MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT
Sbjct: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60

Query: 61  PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 102
           PQPT+S+S+VMDGTPRLVRSRAV+RDLVRDWNFDEVVVVQH
Sbjct: 61  PQPTISNSNVMDGTPRLVRSRAVKRDLVRDWNFDEVVVVQH 101

[Close]

BLAST of Csa7G290600.1 vs. NCBI nr
Match: gi|595801925|ref|XP_007201903.1| (hypothetical protein PRUPE_ppa013850mg [Prunus persica])

HSP 1 Score: 152.5 bits (384), Expect = 3.9e-34
Identity = 77/99 (77.78%), Postives = 87/99 (87.88%), Query Frame = 1


Query: 1  MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFP-PTHHPSYAASAKV 60
          MSLACLVC+SVESPSHSFRSYSVSS++NEGRCSA+ANCL  RPSFP PTH  S  AS+KV
Sbjct: 1  MSLACLVCHSVESPSHSFRSYSVSSAENEGRCSAIANCLARRPSFPLPTH--SNIASSKV 60

Query: 61 TPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVV 99
          TPQPT+ +S  M G PRLVRSRAVRRD+V+DWNFDEVV+
Sbjct: 61 TPQPTLPNSGSMSGAPRLVRSRAVRRDIVQDWNFDEVVM 97

[Close]

BLAST of Csa7G290600.1 vs. NCBI nr
Match: gi|657978182|ref|XP_008381021.1| (PREDICTED: uncharacterized protein LOC103443899 isoform X2 [Malus domestica])

HSP 1 Score: 146.4 bits (368), Expect = 2.8e-32
Identity = 75/98 (76.53%), Postives = 85/98 (86.73%), Query Frame = 1


Query: 1  MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60
          MSLACLVC SVESPSHSFRSYSVSS++N+GRCSA+ANCL  RPS P   H S  AS+KVT
Sbjct: 1  MSLACLVC-SVESPSHSFRSYSVSSTENDGRCSAIANCLTRRPSLPLPRH-SNIASSKVT 60

Query: 61 PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVV 99
          PQPT+S+S  + GTPRLVRSRAVRRD+VRDWNFDEVV+
Sbjct: 61 PQPTLSNSGSIPGTPRLVRSRAVRRDIVRDWNFDEVVM 96

[Close]

BLAST of Csa7G290600.1 vs. NCBI nr
Match: gi|694422487|ref|XP_009339072.1| (PREDICTED: uncharacterized protein LOC103931341 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 146.4 bits (368), Expect = 2.8e-32
Identity = 75/98 (76.53%), Postives = 85/98 (86.73%), Query Frame = 1


Query: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60
           MSLACLVC SVESPSHSFRSYSVSS++N+GRCSA+ANCL  RPS P   H S  AS+KVT
Sbjct: 60  MSLACLVC-SVESPSHSFRSYSVSSTENDGRCSAIANCLTRRPSLPLPRH-SNIASSKVT 119

Query: 61  PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVV 99
           PQPT+S+S  + GTPRLVRSRAVRRD+VRDWNFDEVV+
Sbjct: 120 PQPTLSNSGSIPGTPRLVRSRAVRRDIVRDWNFDEVVM 155

The following BLAST results are available for this feature:

BLAST of Csa7G290600.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7X5_CUCSA	2.9e-52	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290600 PE=4 SV=1	[more]
M5VPB2_PRUPE	2.7e-34	77.78	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013850mg PE=4 SV=1	[more]
D7U5V7_VITVI	9.7e-32	73.74	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0086g00230 PE=4 SV=...	[more]
B9MW51_POPTR	9.7e-32	72.73	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12040g PE=4 SV=1	[more]
A0A061FSF0_THECC	2.2e-31	74.49	Uncharacterized protein OS=Theobroma cacao GN=TCM_036639 PE=4 SV=1	[more]

BLAST of Csa7G290600.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71865.1	3.4e-28	63.92	unknown protein	[more]

BLAST of Csa7G290600.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443867\|ref\|XP_004139697.1\|	4.2e-52	100.00	PREDICTED: uncharacterized protein LOC101218997 [Cucumis sativus]	[more]
gi\|659123028\|ref\|XP_008461452.1\|	3.9e-50	96.04	PREDICTED: uncharacterized protein LOC103500045 [Cucumis melo]	[more]
gi\|595801925\|ref\|XP_007201903.1\|	3.9e-34	77.78	hypothetical protein PRUPE_ppa013850mg [Prunus persica]	[more]
gi\|657978182\|ref\|XP_008381021.1\|	2.8e-32	76.53	PREDICTED: uncharacterized protein LOC103443899 isoform X2 [Malus domestica]	[more]
gi\|694422487\|ref\|XP_009339072.1\|	2.8e-32	76.53	PREDICTED: uncharacterized protein LOC103931341 isoform X1 [Pyrus x bretschneide...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G290600	Csa7G290600	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa7G290600.1	Csa7G290600.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa7G290600.1.utr3p1	Csa7G290600.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa7G290600.1.cds1	Csa7G290600.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36002	FAMILY NOT NAMED	coord: 1..100 score: 1.4