CU106044 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU106044
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 10206717 .. 10211003 (+)
Sequence length	760

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GCAAATAAACTTGGTGTATATCATGGAAAATTTTTTAAAGCATAATTCCATCCAAGTTTACAAAAGTAATTAAACCCATCCCAACCTTGCCTCCTATGAATCAGTAGTATTTAGGTTATATATAAACAAAGTTCTAAATCACATTTTCTCATGCTTACAAATGTGCAAACTCTTCCAATGGAAGTGTGAGTTCAGTTGTACCCATAAGAAAACAAAAATACATAGGAAGCAAGATGCTATCCTCCCATCATTTCAGGTCATCACCACCCATGTTCATTTGAAGACCTTACTCTGTTCCCCTCCTTATCTCAAATGTAAAACGTACTAATGCTGAACTACAACCACCTCATCAAAATTCCAGTCTCGTACTAGGTCCCTTCTTACTGCCCGGCTCCGCACCAATCTTGGCGTTCCGTCCATTACATCGCTGTCGGACATGGTTGGTTGGGGAGTTACCTTGGCTGATGCTGCATATGACGGGTGGTGTGTTGGAGGAAAAAGATGGGTCTCCATATTAGGCAGTTAGCCATTGCAGAACATCTTCCCTCATTGTCTGAACTCGAAACCGAATAGCTCCTGAATGAGTGTGAAGGGCTCTCTACGCTATTACATACAAGACATGCCAGGCTCATATTTATAGTCTAAAGGATCTCCCACTCTCAAGTTCCTAGCTGTAATTCCCCTCCCGTTGGGTGGCGAAAGGGGAAGCTTAAGATTCCCGAAGAGCTGAAGAAAGGGTAGGATCTGTGATCCCCGGCCG

Library


Library category	ESTs
fruit (8DPP) library	9
gynoecious flower library	3
hermaphrodite flower library	3

Homology

[Close]

BLAST of CU106044 vs. TrEMBL
Match: A0A0A0K7X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290600 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.9e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = -2


Query: 346 FPPTHHPSYAASAKVTPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDE 405
           FPPTHHPSYAASAKVTPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDE
Sbjct: 45  FPPTHHPSYAASAKVTPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDE 95

Query: 406  465
           
Sbjct: 105  95

Query: 466  499
           
Sbjct: 165  95

[Close]

BLAST of CU106044 vs. TrEMBL
Match: A0A0A0K7X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290600 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.4e-07
Identity = 30/45 (66.67%), Postives = 30/45 (66.67%), Query Frame = -3


Query: 498 MSLACLVCNSVEXXXXXXXXXXXXXXDNEGRCSAMANCLIWRPIF 557
           MSLACLVCNSVE              DNEGRCSAMANCLIWRP F
Sbjct: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSF 45

Query: 558  617
           
Sbjct: 61   45

Query: 618  633
           
Sbjct: 121  45

HSP 2 Score: 73.2 bits (178), Expect = 5.2e-10
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = -2


Query: 349 PPTHHPSYAASAKVTPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFD 408
           PP  + S+A+S+KVTPQP+   +D M G PRLVRSRAVRRDLVRDWNFD
Sbjct: 47  PPRANSSFASSSKVTPQPSSPGNDDMTGPPRLVRSRAVRRDLVRDWNFD 95

Query: 409  468
           
Sbjct: 107  95

Query: 469  496
           
Sbjct: 167  95

[Close]

BLAST of CU106044 vs. TrEMBL
Match: B9MW51_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12040g PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 4.0e-02
Identity = 22/39 (56.41%), Postives = 25/39 (64.10%), Query Frame = -3


Query: 516 MSLACLVCNSVEXXXXXXXXXXXXXXDNEGRCSAMANCL 575
           MSLACLVC+SVE              DNEGRCSA+ANC+
Sbjct: 1   MSLACLVCHSVESPSHSFRSYSVSSSDNEGRCSAIANCI 39

Query: 576  633
           
Sbjct: 61   39

HSP 2 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = -2


Query: 346 FP-PTHHPSYAASAKVTPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDE 405
           FP PTH  S  AS+KVTPQPT+ +S  M G PRLVRSRAVRRD+V+DWNFDE
Sbjct: 45  FPLPTH--SNIASSKVTPQPTLPNSGSMSGAPRLVRSRAVRRDIVQDWNFDE 94

Query: 406  465
           
Sbjct: 105  94

Query: 466  499
           
Sbjct: 165  94

[Close]

BLAST of CU106044 vs. TrEMBL
Match: M5VPB2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013850mg PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.8e-03
Identity = 25/45 (55.56%), Postives = 28/45 (62.22%), Query Frame = -3


Query: 498 MSLACLVCNSVEXXXXXXXXXXXXXXDNEGRCSAMANCLIWRPIF 557
           MSLACLVC+SVE              +NEGRCSA+ANCL  RP F
Sbjct: 1   MSLACLVCHSVESPSHSFRSYSVSSAENEGRCSAIANCLARRPSF 45

Query: 558  617
           
Sbjct: 61   45

Query: 618  633
           
Sbjct: 121  45

HSP 2 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = -2


Query: 346 PTHHPSYAASAKVTPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDE 405
           PT  P+ A+++KVTPQP +     M+G PRLVRSRAVRRDLVRDWNFDE
Sbjct: 46  PTPRPALASTSKVTPQPNIQTVIEMEGAPRLVRSRAVRRDLVRDWNFDE 94

Query: 406  465
           
Sbjct: 106  94

Query: 466  493
           
Sbjct: 166  94

[Close]

BLAST of CU106044 vs. TrEMBL
Match: V4T3Y3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003143mg PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = -2


Query: 346 PTHHPSYAASAKVTPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDE 405
           PT  P+ A+++KVTPQP +     M+G PRLVRSRAVRRDLVRDWNFDE
Sbjct: 46  PTPRPALASTSKVTPQPNIQTVIEMEGAPRLVRSRAVRRDLVRDWNFDE 94

Query: 406  465
           
Sbjct: 106  94

Query: 466  493
           
Sbjct: 166  94

[Close]

BLAST of CU106044 vs. NCBI nr
Match: gi|449443867|ref|XP_004139697.1| (PREDICTED: uncharacterized protein LOC101218997 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 5.5e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = -2


Query: 346 FPPTHHPSYAASAKVTPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDE 405
           FPPTHHPSYAASAKVTPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDE
Sbjct: 45  FPPTHHPSYAASAKVTPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDE 95

Query: 406  465
           
Sbjct: 105  95

Query: 466  499
           
Sbjct: 165  95

[Close]

BLAST of CU106044 vs. NCBI nr
Match: gi|659123028|ref|XP_008461452.1| (PREDICTED: uncharacterized protein LOC103500045 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 5.2e-19
Identity = 47/51 (92.16%), Postives = 51/51 (100.00%), Query Frame = -2


Query: 346 FPPTHHPSYAASAKVTPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDE 405
           FPPTHHPSYAASAKVTPQPT+S+S+VMDGTPRLVRSRAV+RDLVRDWNFDE
Sbjct: 45  FPPTHHPSYAASAKVTPQPTISNSNVMDGTPRLVRSRAVKRDLVRDWNFDE 95

Query: 406  465
           
Sbjct: 105  95

Query: 466  499
           
Sbjct: 165  95

[Close]

BLAST of CU106044 vs. NCBI nr
Match: gi|657984651|ref|XP_008384420.1| (PREDICTED: uncharacterized protein LOC103447021 [Malus domestica])

HSP 1 Score: 73.6 bits (179), Expect = 5.7e-10
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = -2


Query: 346 PTHHPSYAASAKVTPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDE 405
           PTH  S  AS+KVTPQPT+S+   + GTPRLVRSRAVRRD+VRDWNFDE
Sbjct: 47  PTH--SNIASSKVTPQPTLSNGGSIPGTPRLVRSRAVRRDIVRDWNFDE 93

Query: 406  465
           
Sbjct: 107  93

Query: 466  493
           
Sbjct: 167  93

[Close]

BLAST of CU106044 vs. NCBI nr
Match: gi|743887555|ref|XP_011038181.1| (PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica])

HSP 1 Score: 72.8 bits (177), Expect = 9.8e-10
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = -2


Query: 349 PPTHHPSYAASAKVTPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFD 408
           PP  + S+A+S+KVTPQP+   +D M G PRLVRSRAVRRDLVRDWNFD
Sbjct: 47  PPRANSSFASSSKVTPQPSSPSNDDMTGPPRLVRSRAVRRDLVRDWNFD 95

Query: 409  468
           
Sbjct: 107  95

Query: 469  496
           
Sbjct: 167  95

[Close]

BLAST of CU106044 vs. NCBI nr
Match: gi|657978180|ref|XP_008381020.1| (PREDICTED: uncharacterized protein LOC103443899 isoform X1 [Malus domestica])

HSP 1 Score: 72.8 bits (177), Expect = 9.8e-10
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = -2


Query: 346 PTHHPSYAASAKVTPQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDE 405
           P    S  AS+KVTPQPT+S+S  + GTPRLVRSRAVRRD+VRDWNFDE
Sbjct: 104 PLPRHSNIASSKVTPQPTLSNSGSIPGTPRLVRSRAVRRDIVRDWNFDE 152

Query: 406  465
           
Sbjct: 164  152

Query: 466  493
           
Sbjct: 224  152

The following BLAST results are available for this feature:

BLAST of CU106044 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7X5_CUCSA	2.9e-21	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290600 PE=4 SV=1	[more]
A0A0A0K7X5_CUCSA	5.4e-07	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290600 PE=4 SV=1	[more]
B9MW51_POPTR	4.0e-02	56.41	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12040g PE=4 SV=1	[more]
M5VPB2_PRUPE	2.8e-03	55.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013850mg PE=4 SV=1	[more]
V4T3Y3_9ROSI	1.5e-09	67.35	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003143mg PE=4 SV=1	[more]

BLAST of CU106044 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443867\|ref\|XP_004139697.1\|	5.5e-21	100.00	PREDICTED: uncharacterized protein LOC101218997 [Cucumis sativus]	[more]
gi\|659123028\|ref\|XP_008461452.1\|	5.2e-19	92.16	PREDICTED: uncharacterized protein LOC103500045 [Cucumis melo]	[more]
gi\|657984651\|ref\|XP_008384420.1\|	5.7e-10	73.47	PREDICTED: uncharacterized protein LOC103447021 [Malus domestica]	[more]
gi\|743887555\|ref\|XP_011038181.1\|	9.8e-10	69.39	PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]	[more]
gi\|657978180\|ref\|XP_008381020.1\|	9.8e-10	71.43	PREDICTED: uncharacterized protein LOC103443899 isoform X1 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G290600	Csa7G290600	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02K2AWC	FKNP3UI02K2AWC	EST
FKNP3UI02KUTPY	FKNP3UI02KUTPY	EST
FKNP3UI02LAUHW	FKNP3UI02LAUHW	EST
FKNP3UI02MJHG4	FKNP3UI02MJHG4	EST
FKNP3UI02MOVTC	FKNP3UI02MOVTC	EST
FKNP3UI02MVND1	FKNP3UI02MVND1	EST
FKNP3UI02NDHY2	FKNP3UI02NDHY2	EST
FKNP3UI02O50B2	FKNP3UI02O50B2	EST
FKNP3UI02OJQ3J	FKNP3UI02OJQ3J	EST
G0084001	G0084001	EST
G0095668	G0095668	EST
G0124961	G0124961	EST
H0067638	H0067638	EST
H0068520	H0068520	EST
H0164253	H0164253	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36002	FAMILY NOT NAMED	coord: 5..61 score: 1.1
None	No IPR available	PANTHER	PTHR36002:SF1	SUBFAMILY NOT NAMED	coord: 5..61 score: 1.1