Csa7G290550 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G290550
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 10180811 .. 10181104 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCAACGTTTCAAGGCCCTTATGCAAGACAAAAAGAAAGTGAAGTTGAGGGAGCAGAAAGAGCTCCTCAACAAAATTGATCAAGCACCCATCTCTACAAAGAAGGGAAAGGTGAGAAAGACTCCTAGTGAGGAGATTTGTGAAGAGTTTGAGAGGAAGTTGGAAGATCTGAGCCCTCTGGAGGATGAAGTGGTGAAACCGTTAAAGAAGAAGGTAACGGTGAAAAAGAGTGTGTTAAAGAAACAATTTGACAAGAGGCGAGAAGAAAAAGAAAAGAAGAAAGGTCCTTAA

mRNA sequence

ATGACGCAACGTTTCAAGGCCCTTATGCAAGACAAAAAGAAAGTGAAGTTGAGGGAGCAGAAAGAGCTCCTCAACAAAATTGATCAAGCACCCATCTCTACAAAGAAGGGAAAGGTGAGAAAGACTCCTAGTGAGGAGATTTGTGAAGAGTTTGAGAGGAAGTTGGAAGATCTGAGCCCTCTGGAGGATGAAGTGGTGAAACCGTTAAAGAAGAAGGTAACGGTGAAAAAGAGTGTGTTAAAGAAACAATTTGACAAGAGGCGAGAAGAAAAAGAAAAGAAGAAAGGTCCTTAA

Coding sequence (CDS)

ATGACGCAACGTTTCAAGGCCCTTATGCAAGACAAAAAGAAAGTGAAGTTGAGGGAGCAGAAAGAGCTCCTCAACAAAATTGATCAAGCACCCATCTCTACAAAGAAGGGAAAGGTGAGAAAGACTCCTAGTGAGGAGATTTGTGAAGAGTTTGAGAGGAAGTTGGAAGATCTGAGCCCTCTGGAGGATGAAGTGGTGAAACCGTTAAAGAAGAAGGTAACGGTGAAAAAGAGTGTGTTAAAGAAACAATTTGACAAGAGGCGAGAAGAAAAAGAAAAGAAGAAAGGTCCTTAA

Protein sequence

MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP*
Homology
[Close]
BLAST of Csa7G290550 vs. TrEMBL
Match: A0A0A0K7W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.1e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60
          MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP
Sbjct: 1  MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60

Query: 61 LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP 98
          LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP
Sbjct: 61 LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP 97

[Close]
BLAST of Csa7G290550 vs. TrEMBL
Match: A0A0A0L7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418760 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-13
Identity = 37/61 (60.66%), Postives = 52/61 (85.25%), Query Frame = 1 

Query: 10  QDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPL 69
           Q+KK+++L+EQ+ELLNK+D+  +  KKGK ++T SEEICEE E+KLEDLSP+EDEV + L
Sbjct: 55  QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDL 114

Query: 70  K 71
           +
Sbjct: 115 R 115

[Close]
BLAST of Csa7G290550 vs. TrEMBL
Match: A0A0A0K4R7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G298750 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.5e-10
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 1 

Query: 43 PSEEICEEFERKLEDLSPLEDEVVKPL-KKKVTVKKSVLKKQFDKR 88
          P EEI EEFERKLEDLSPLEDEVVKPL KKKVTV K VLK+QF KR
Sbjct: 4  PIEEIFEEFERKLEDLSPLEDEVVKPLKKKKVTVNKKVLKEQFVKR 49

[Close]
BLAST of Csa7G290550 vs. TrEMBL
Match: A0A0A0KN01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G366680 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-06
Identity = 32/61 (52.46%), Postives = 48/61 (78.69%), Query Frame = 1 

Query: 18 REQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKP-LKKKVTVK 77
          RE++ELLNK+ +  +S ++ K +KTPSE +C+E E++LED + LE EV+KP  K+KVT+K
Sbjct: 7  REREELLNKVKKIALSVERDKTKKTPSE-LCDELEKELEDENSLE-EVIKPSRKRKVTMK 65

[Close]
BLAST of Csa7G290550 vs. TrEMBL
Match: A0A0A0LNF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145900 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-06
Identity = 33/91 (36.26%), Postives = 56/91 (61.54%), Query Frame = 1 

Query: 6   KALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTP--SEEICEEFERKLEDLSPLED 65
           KAL Q+K++  LRE +EL +K D+  +S +K K ++     +EI EE E+++  +S LE+
Sbjct: 15  KALAQEKQETNLREWEELHSKDDEVALSVEKDKEKEKEKGDQEIAEELEKEIGHMSSLEE 74

Query: 66  EVVKPLKKKVTVKKSVLKKQFDKRREEKEKK 95
           E  +  K+   V K+ L  Q + RR+ K+K+
Sbjct: 75  EAPRRQKRISKVSKNFLHAQVEMRRKAKDKE 105

[Close]
BLAST of Csa7G290550 vs. NCBI nr
Match: gi|700189199|gb|KGN44432.1| (hypothetical protein Csa_7G290550 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 7.3e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60
          MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP
Sbjct: 1  MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60

Query: 61 LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP 98
          LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP
Sbjct: 61 LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP 97

[Close]
BLAST of Csa7G290550 vs. NCBI nr
Match: gi|659083323|ref|XP_008442290.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 7.1e-17
Identity = 50/97 (51.55%), Postives = 74/97 (76.29%), Query Frame = 1 

Query: 3   QRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLE 62
           QR  AL + KK++KLR+ +ELLNK+D+  +S +KGK ++   EE  +EFE+++++ SPLE
Sbjct: 32  QRAMALAEGKKEIKLRQPEELLNKVDKLALSVEKGKEKEKTFEEFYKEFEKEIDEFSPLE 91

Query: 63  DEVV-KPLKKK-VTVKKSVLKKQFDKRREEKEKKKGP 98
           D VV +P KK+ VT+KK VL+ QF KRR+EK K++GP
Sbjct: 92  DNVVERPAKKRNVTMKKKVLRDQFAKRRKEK-KRRGP 127

[Close]
BLAST of Csa7G290550 vs. NCBI nr
Match: gi|659130998|ref|XP_008465464.1| (PREDICTED: DNA ligase 1-like [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 2.7e-16
Identity = 49/92 (53.26%), Postives = 71/92 (77.17%), Query Frame = 1 

Query: 3   QRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLE 62
           Q  KAL ++KK++KLRE++ELLNK+D+  +S +K K  KT  EE CEEF++++E+LSPLE
Sbjct: 52  QGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKEEKT-FEEHCEEFKKEIEELSPLE 111

Query: 63  DEVVKPLKKKVTVKKSVLKKQFDKRREEKEKK 95
           DEVV    +K + KK +++ Q DKR+E+KEKK
Sbjct: 112 DEVV----EKSSKKKRIMEGQDDKRKEKKEKK 138

[Close]
BLAST of Csa7G290550 vs. NCBI nr
Match: gi|700202852|gb|KGN57985.1| (hypothetical protein Csa_3G418760 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 2.8e-13
Identity = 37/61 (60.66%), Postives = 52/61 (85.25%), Query Frame = 1 

Query: 10  QDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPL 69
           Q+KK+++L+EQ+ELLNK+D+  +  KKGK ++T SEEICEE E+KLEDLSP+EDEV + L
Sbjct: 55  QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDL 114

Query: 70  K 71
           +
Sbjct: 115 R 115

[Close]
BLAST of Csa7G290550 vs. NCBI nr
Match: gi|659090014|ref|XP_008445787.1| (PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 40/87 (45.98%), Postives = 62/87 (71.26%), Query Frame = 1 

Query: 10  QDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPL 69
           ++KK+ KLRE++ELL K+D   +S +K K  +   E   EEFE++++ L PLE++V++P 
Sbjct: 91  REKKETKLREREELLGKVDNVALSAEKDKCEEKNFEVHYEEFEKEIDKLCPLEEKVIRPA 150

Query: 70  KKKV-TVKKSVLKKQFDKRREEKEKKK 96
           KK+  T+KK  L+KQF KRR E+ K+K
Sbjct: 151 KKRTFTMKKKALRKQFAKRRVEEMKRK 177

The following BLAST results are available for this feature:
BLAST of Csa7G290550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7W9_CUCSA5.1e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1[more]
A0A0A0L7S0_CUCSA2.0e-1360.66Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418760 PE=4 SV=1[more]
A0A0A0K4R7_CUCSA4.5e-1084.78Uncharacterized protein OS=Cucumis sativus GN=Csa_7G298750 PE=4 SV=1[more]
A0A0A0KN01_CUCSA2.3e-0652.46Uncharacterized protein OS=Cucumis sativus GN=Csa_5G366680 PE=4 SV=1[more]
A0A0A0LNF9_CUCSA3.0e-0636.26Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145900 PE=4 SV=1[more]
BLAST of Csa7G290550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189199|gb|KGN44432.1|7.3e-46100.00hypothetical protein Csa_7G290550 [Cucumis sativus][more]
gi|659083323|ref|XP_008442290.1|7.1e-1751.55PREDICTED: stress response protein NST1-like [Cucumis melo][more]
gi|659130998|ref|XP_008465464.1|2.7e-1653.26PREDICTED: DNA ligase 1-like [Cucumis melo][more]
gi|700202852|gb|KGN57985.1|2.8e-1360.66hypothetical protein Csa_3G418760 [Cucumis sativus][more]
gi|659090014|ref|XP_008445787.1|1.1e-1245.98PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU159549cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G290550.1Csa7G290550.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU159549CU159549transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa7G290550CSPI07G12270Wild cucumber (PI 183967)cpicuB354
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G290550Cucurbita moschata (Rifu)cmocuB029
Csa7G290550Cucurbita moschata (Rifu)cmocuB032
Csa7G290550Cucurbita moschata (Rifu)cmocuB478
Csa7G290550Melon (DHL92) v3.5.1cumeB542
Csa7G290550Watermelon (Charleston Gray)cuwcgB525
Csa7G290550Watermelon (97103) v1cuwmB567
Csa7G290550Cucurbita pepo (Zucchini)cpecuB592
Csa7G290550Cucurbita pepo (Zucchini)cpecuB801
Csa7G290550Bottle gourd (USVL1VR-Ls)culsiB503
Csa7G290550Cucumber (Gy14) v2cgybcuB323
Csa7G290550Melon (DHL92) v3.6.1cumedB503
Csa7G290550Silver-seed gourdcarcuB0006
Csa7G290550Watermelon (97103) v2cuwmbB571
Csa7G290550Wax gourdcuwgoB707
Csa7G290550Cucumber (Gy14) v1cgycuB076
Csa7G290550Cucurbita maxima (Rimu)cmacuB039
Csa7G290550Cucurbita maxima (Rimu)cmacuB489
Csa7G290550Cucurbita maxima (Rimu)cmacuB500