Csa7G290550.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G290550.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 10180811 .. 10181104 (-)
Sequence length	294

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCAACGTTTCAAGGCCCTTATGCAAGACAAAAAGAAAGTGAAGTTGAGGGAGCAGAAAGAGCTCCTCAACAAAATTGATCAAGCACCCATCTCTACAAAGAAGGGAAAGGTGAGAAAGACTCCTAGTGAGGAGATTTGTGAAGAGTTTGAGAGGAAGTTGGAAGATCTGAGCCCTCTGGAGGATGAAGTGGTGAAACCGTTAAAGAAGAAGGTAACGGTGAAAAAGAGTGTGTTAAAGAAACAATTTGACAAGAGGCGAGAAGAAAAAGAAAAGAAGAAAGGTCCTTAA

mRNA sequence

ATGACGCAACGTTTCAAGGCCCTTATGCAAGACAAAAAGAAAGTGAAGTTGAGGGAGCAGAAAGAGCTCCTCAACAAAATTGATCAAGCACCCATCTCTACAAAGAAGGGAAAGGTGAGAAAGACTCCTAGTGAGGAGATTTGTGAAGAGTTTGAGAGGAAGTTGGAAGATCTGAGCCCTCTGGAGGATGAAGTGGTGAAACCGTTAAAGAAGAAGGTAACGGTGAAAAAGAGTGTGTTAAAGAAACAATTTGACAAGAGGCGAGAAGAAAAAGAAAAGAAGAAAGGTCCTTAA

Coding sequence (CDS)

ATGACGCAACGTTTCAAGGCCCTTATGCAAGACAAAAAGAAAGTGAAGTTGAGGGAGCAGAAAGAGCTCCTCAACAAAATTGATCAAGCACCCATCTCTACAAAGAAGGGAAAGGTGAGAAAGACTCCTAGTGAGGAGATTTGTGAAGAGTTTGAGAGGAAGTTGGAAGATCTGAGCCCTCTGGAGGATGAAGTGGTGAAACCGTTAAAGAAGAAGGTAACGGTGAAAAAGAGTGTGTTAAAGAAACAATTTGACAAGAGGCGAGAAGAAAAAGAAAAGAAGAAAGGTCCTTAA

Protein sequence

MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP*

Homology

[Close]

BLAST of Csa7G290550.1 vs. TrEMBL
Match: A0A0A0K7W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.1e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60
          MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP
Sbjct: 1  MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60

Query: 61 LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP 98
          LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP
Sbjct: 61 LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP 97

[Close]

BLAST of Csa7G290550.1 vs. TrEMBL
Match: A0A0A0L7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418760 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-13
Identity = 37/61 (60.66%), Postives = 52/61 (85.25%), Query Frame = 1


Query: 10  QDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPL 69
           Q+KK+++L+EQ+ELLNK+D+  +  KKGK ++T SEEICEE E+KLEDLSP+EDEV + L
Sbjct: 55  QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDL 114

Query: 70  K 71
           +
Sbjct: 115 R 115

[Close]

BLAST of Csa7G290550.1 vs. TrEMBL
Match: A0A0A0K4R7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G298750 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.5e-10
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 1


Query: 43 PSEEICEEFERKLEDLSPLEDEVVKPL-KKKVTVKKSVLKKQFDKR 88
          P EEI EEFERKLEDLSPLEDEVVKPL KKKVTV K VLK+QF KR
Sbjct: 4  PIEEIFEEFERKLEDLSPLEDEVVKPLKKKKVTVNKKVLKEQFVKR 49

[Close]

BLAST of Csa7G290550.1 vs. TrEMBL
Match: A0A0A0KN01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G366680 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-06
Identity = 32/61 (52.46%), Postives = 48/61 (78.69%), Query Frame = 1


Query: 18 REQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKP-LKKKVTVK 77
          RE++ELLNK+ +  +S ++ K +KTPSE +C+E E++LED + LE EV+KP  K+KVT+K
Sbjct: 7  REREELLNKVKKIALSVERDKTKKTPSE-LCDELEKELEDENSLE-EVIKPSRKRKVTMK 65

[Close]

BLAST of Csa7G290550.1 vs. TrEMBL
Match: A0A0A0LNF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145900 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-06
Identity = 33/91 (36.26%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 6   KALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTP--SEEICEEFERKLEDLSPLED 65
           KAL Q+K++  LRE +EL +K D+  +S +K K ++     +EI EE E+++  +S LE+
Sbjct: 15  KALAQEKQETNLREWEELHSKDDEVALSVEKDKEKEKEKGDQEIAEELEKEIGHMSSLEE 74

Query: 66  EVVKPLKKKVTVKKSVLKKQFDKRREEKEKK 95
           E  +  K+   V K+ L  Q + RR+ K+K+
Sbjct: 75  EAPRRQKRISKVSKNFLHAQVEMRRKAKDKE 105

[Close]

BLAST of Csa7G290550.1 vs. NCBI nr
Match: gi|700189199|gb|KGN44432.1| (hypothetical protein Csa_7G290550 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 7.3e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60
          MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP
Sbjct: 1  MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60

Query: 61 LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP 98
          LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP
Sbjct: 61 LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP 97

[Close]

BLAST of Csa7G290550.1 vs. NCBI nr
Match: gi|659083323|ref|XP_008442290.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 7.1e-17
Identity = 50/97 (51.55%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 3   QRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLE 62
           QR  AL + KK++KLR+ +ELLNK+D+  +S +KGK ++   EE  +EFE+++++ SPLE
Sbjct: 32  QRAMALAEGKKEIKLRQPEELLNKVDKLALSVEKGKEKEKTFEEFYKEFEKEIDEFSPLE 91

Query: 63  DEVV-KPLKKK-VTVKKSVLKKQFDKRREEKEKKKGP 98
           D VV +P KK+ VT+KK VL+ QF KRR+EK K++GP
Sbjct: 92  DNVVERPAKKRNVTMKKKVLRDQFAKRRKEK-KRRGP 127

[Close]

BLAST of Csa7G290550.1 vs. NCBI nr
Match: gi|659130998|ref|XP_008465464.1| (PREDICTED: DNA ligase 1-like [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 2.7e-16
Identity = 49/92 (53.26%), Postives = 71/92 (77.17%), Query Frame = 1


Query: 3   QRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLE 62
           Q  KAL ++KK++KLRE++ELLNK+D+  +S +K K  KT  EE CEEF++++E+LSPLE
Sbjct: 52  QGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKEEKT-FEEHCEEFKKEIEELSPLE 111

Query: 63  DEVVKPLKKKVTVKKSVLKKQFDKRREEKEKK 95
           DEVV    +K + KK +++ Q DKR+E+KEKK
Sbjct: 112 DEVV----EKSSKKKRIMEGQDDKRKEKKEKK 138

[Close]

BLAST of Csa7G290550.1 vs. NCBI nr
Match: gi|700202852|gb|KGN57985.1| (hypothetical protein Csa_3G418760 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 2.8e-13
Identity = 37/61 (60.66%), Postives = 52/61 (85.25%), Query Frame = 1


Query: 10  QDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPL 69
           Q+KK+++L+EQ+ELLNK+D+  +  KKGK ++T SEEICEE E+KLEDLSP+EDEV + L
Sbjct: 55  QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDL 114

Query: 70  K 71
           +
Sbjct: 115 R 115

[Close]

BLAST of Csa7G290550.1 vs. NCBI nr
Match: gi|659090014|ref|XP_008445787.1| (PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 40/87 (45.98%), Postives = 62/87 (71.26%), Query Frame = 1


Query: 10  QDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPL 69
           ++KK+ KLRE++ELL K+D   +S +K K  +   E   EEFE++++ L PLE++V++P 
Sbjct: 91  REKKETKLREREELLGKVDNVALSAEKDKCEEKNFEVHYEEFEKEIDKLCPLEEKVIRPA 150

Query: 70  KKKV-TVKKSVLKKQFDKRREEKEKKK 96
           KK+  T+KK  L+KQF KRR E+ K+K
Sbjct: 151 KKRTFTMKKKALRKQFAKRRVEEMKRK 177

The following BLAST results are available for this feature:

BLAST of Csa7G290550.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7W9_CUCSA	5.1e-46	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1	[more]
A0A0A0L7S0_CUCSA	2.0e-13	60.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418760 PE=4 SV=1	[more]
A0A0A0K4R7_CUCSA	4.5e-10	84.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G298750 PE=4 SV=1	[more]
A0A0A0KN01_CUCSA	2.3e-06	52.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G366680 PE=4 SV=1	[more]
A0A0A0LNF9_CUCSA	3.0e-06	36.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145900 PE=4 SV=1	[more]

BLAST of Csa7G290550.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189199\|gb\|KGN44432.1\|	7.3e-46	100.00	hypothetical protein Csa_7G290550 [Cucumis sativus]	[more]
gi\|659083323\|ref\|XP_008442290.1\|	7.1e-17	51.55	PREDICTED: stress response protein NST1-like [Cucumis melo]	[more]
gi\|659130998\|ref\|XP_008465464.1\|	2.7e-16	53.26	PREDICTED: DNA ligase 1-like [Cucumis melo]	[more]
gi\|700202852\|gb\|KGN57985.1\|	2.8e-13	60.66	hypothetical protein Csa_3G418760 [Cucumis sativus]	[more]
gi\|659090014\|ref\|XP_008445787.1\|	1.1e-12	45.98	PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G290550	Csa7G290550	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa7G290550.1	Csa7G290550.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa7G290550.1.cds1	Csa7G290550.1.cds1	CDS