CSPI07G12270 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G12270
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr7 : 10564328 .. 10564621 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCAACGTTTCAAGGCCCTTATGCAAGACAAAAAGGAAGTGAAGTTGAGGGAGCAAAAAGAGCTCCTCAACAAAATTGATCAAGCACCCATCTCTACAAAGAAGGGAAAGGTGAGAAAGACTCCTAGTGAGGAGATTTGTGAAGAGTTTGAGAGGAAGTTGGAAGATCTGAGCCCTCTGGAGGATGAAGTGGTGAAACCGTTAAAGAAGAAGGTAACGGTGAAAAAAAGTGTGTTAAAGAAACAATTTGACAAGAGGCGAGAAGAAAAAGAAAAGAAGAAAGGTCCTTAA

mRNA sequence

ATGACGCAACGTTTCAAGGCCCTTATGCAAGACAAAAAGGAAGTGAAGTTGAGGGAGCAAAAAGAGCTCCTCAACAAAATTGATCAAGCACCCATCTCTACAAAGAAGGGAAAGGTGAGAAAGACTCCTAGTGAGGAGATTTGTGAAGAGTTTGAGAGGAAGTTGGAAGATCTGAGCCCTCTGGAGGATGAAGTGGTGAAACCGTTAAAGAAGAAGGTAACGGTGAAAAAAAGTGTGTTAAAGAAACAATTTGACAAGAGGCGAGAAGAAAAAGAAAAGAAGAAAGGTCCTTAA

Coding sequence (CDS)

ATGACGCAACGTTTCAAGGCCCTTATGCAAGACAAAAAGGAAGTGAAGTTGAGGGAGCAAAAAGAGCTCCTCAACAAAATTGATCAAGCACCCATCTCTACAAAGAAGGGAAAGGTGAGAAAGACTCCTAGTGAGGAGATTTGTGAAGAGTTTGAGAGGAAGTTGGAAGATCTGAGCCCTCTGGAGGATGAAGTGGTGAAACCGTTAAAGAAGAAGGTAACGGTGAAAAAAAGTGTGTTAAAGAAACAATTTGACAAGAGGCGAGAAGAAAAAGAAAAGAAGAAAGGTCCTTAA

Homology

[Close]

BLAST of CSPI07G12270 vs. TrEMBL
Match: A0A0A0K7W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.9e-40
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MTQRFKALMQDKKEVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60
          MTQRFKALMQDKK+VKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP
Sbjct: 1  MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60

Query: 61 LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP 98
          LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP
Sbjct: 61 LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP 97

[Close]

BLAST of CSPI07G12270 vs. TrEMBL
Match: A0A0A0L7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418760 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-11
Identity = 38/61 (62.30%), Postives = 52/61 (85.25%), Query Frame = 1


Query: 10  QDKKEVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPL 69
           Q+KKE++L+EQ+ELLNK+D+  +  KKGK ++T SEEICEE E+KLEDLSP+EDEV + L
Sbjct: 55  QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDL 114

Query: 70  K 71
           +
Sbjct: 115 R 115

[Close]

BLAST of CSPI07G12270 vs. TrEMBL
Match: A0A0A0K4R7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G298750 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.2e-08
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 1


Query: 43 PSEEICEEFERKLEDLSPLEDEVVKPL-KKKVTVKKSVLKKQFDKR 88
          P EEI EEFERKLEDLSPLEDEVVKPL KKKVTV K VLK+QF KR
Sbjct: 4  PIEEIFEEFERKLEDLSPLEDEVVKPLKKKKVTVNKKVLKEQFVKR 49

[Close]

BLAST of CSPI07G12270 vs. NCBI nr
Match: gi|700189199|gb|KGN44432.1| (hypothetical protein Csa_7G290550 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.7e-40
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MTQRFKALMQDKKEVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60
          MTQRFKALMQDKK+VKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP
Sbjct: 1  MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60

Query: 61 LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP 98
          LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP
Sbjct: 61 LEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP 97

[Close]

BLAST of CSPI07G12270 vs. NCBI nr
Match: gi|659083323|ref|XP_008442290.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-12
Identity = 51/97 (52.58%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 3   QRFKALMQDKKEVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLE 62
           QR  AL + KKE+KLR+ +ELLNK+D+  +S +KGK ++   EE  +EFE+++++ SPLE
Sbjct: 32  QRAMALAEGKKEIKLRQPEELLNKVDKLALSVEKGKEKEKTFEEFYKEFEKEIDEFSPLE 91

Query: 63  DEVV-KPLKKK-VTVKKSVLKKQFDKRREEKEKKKGP 98
           D VV +P KK+ VT+KK VL+ QF KRR+EK K++GP
Sbjct: 92  DNVVERPAKKRNVTMKKKVLRDQFAKRRKEK-KRRGP 127

[Close]

BLAST of CSPI07G12270 vs. NCBI nr
Match: gi|659130998|ref|XP_008465464.1| (PREDICTED: DNA ligase 1-like [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 4.0e-12
Identity = 50/92 (54.35%), Postives = 71/92 (77.17%), Query Frame = 1


Query: 3   QRFKALMQDKKEVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLE 62
           Q  KAL ++KKE+KLRE++ELLNK+D+  +S +K K  KT  EE CEEF++++E+LSPLE
Sbjct: 52  QGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKEEKT-FEEHCEEFKKEIEELSPLE 111

Query: 63  DEVVKPLKKKVTVKKSVLKKQFDKRREEKEKK 95
           DEVV    +K + KK +++ Q DKR+E+KEKK
Sbjct: 112 DEVV----EKSSKKKRIMEGQDDKRKEKKEKK 138

[Close]

BLAST of CSPI07G12270 vs. NCBI nr
Match: gi|700202852|gb|KGN57985.1| (hypothetical protein Csa_3G418760 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-11
Identity = 38/61 (62.30%), Postives = 52/61 (85.25%), Query Frame = 1


Query: 10  QDKKEVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPL 69
           Q+KKE++L+EQ+ELLNK+D+  +  KKGK ++T SEEICEE E+KLEDLSP+EDEV + L
Sbjct: 55  QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDL 114

Query: 70  K 71
           +
Sbjct: 115 R 115

[Close]

BLAST of CSPI07G12270 vs. NCBI nr
Match: gi|659109371|ref|XP_008454680.1| (PREDICTED: uncharacterized protein LOC103495036 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 3.8e-10
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 4   RFKALMQDKKEVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLED 63
           R KAL  +KKE KLREQ+ELLNK+++  +ST+KGK +KT +EE C+EFER++E+LSP +D
Sbjct: 51  RRKALADEKKETKLREQEELLNKVEKVALSTEKGKTKKT-TEEYCKEFEREVEELSPFKD 110

Query: 64  -EVVKPLKKK 73
            EVVKP K K
Sbjct: 111 EEVVKPPKIK 119

The following BLAST results are available for this feature:

BLAST of CSPI07G12270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G12270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7W9_CUCSA	1.9e-40	98.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1	[more]
A0A0A0L7S0_CUCSA	1.4e-11	62.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418760 PE=4 SV=1	[more]
A0A0A0K4R7_CUCSA	7.2e-08	84.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G298750 PE=4 SV=1	[more]

BLAST of CSPI07G12270 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G12270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189199\|gb\|KGN44432.1\|	2.7e-40	98.97	hypothetical protein Csa_7G290550 [Cucumis sativus]	[more]
gi\|659083323\|ref\|XP_008442290.1\|	2.4e-12	52.58	PREDICTED: stress response protein NST1-like [Cucumis melo]	[more]
gi\|659130998\|ref\|XP_008465464.1\|	4.0e-12	54.35	PREDICTED: DNA ligase 1-like [Cucumis melo]	[more]
gi\|700202852\|gb\|KGN57985.1\|	2.0e-11	62.30	hypothetical protein Csa_3G418760 [Cucumis sativus]	[more]
gi\|659109371\|ref\|XP_008454680.1\|	3.8e-10	61.43	PREDICTED: uncharacterized protein LOC103495036 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G12270.1	CSPI07G12270.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI07G12270	Csa7G290550	Cucumber (Chinese Long) v2	cpicuB354
CSPI07G12270	CsaV3_7G024280	Cucumber (Chinese Long) v3	cpicucB414

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI07G12270	Wax gourd	cpiwgoB718
CSPI07G12270	Cucumber (Gy14) v1	cgycpiB079
CSPI07G12270	Cucurbita maxima (Rimu)	cmacpiB039
CSPI07G12270	Cucurbita maxima (Rimu)	cmacpiB493
CSPI07G12270	Cucurbita maxima (Rimu)	cmacpiB505
CSPI07G12270	Cucurbita moschata (Rifu)	cmocpiB029
CSPI07G12270	Cucurbita moschata (Rifu)	cmocpiB035
CSPI07G12270	Cucurbita moschata (Rifu)	cmocpiB484
CSPI07G12270	Melon (DHL92) v3.5.1	cpimeB528
CSPI07G12270	Watermelon (Charleston Gray)	cpiwcgB554
CSPI07G12270	Watermelon (97103) v1	cpiwmB586
CSPI07G12270	Cucurbita pepo (Zucchini)	cpecpiB593
CSPI07G12270	Cucurbita pepo (Zucchini)	cpecpiB801
CSPI07G12270	Bottle gourd (USVL1VR-Ls)	cpilsiB517
CSPI07G12270	Melon (DHL92) v3.6.1	cpimedB514
CSPI07G12270	Cucumber (Gy14) v2	cgybcpiB331
CSPI07G12270	Silver-seed gourd	carcpiB0006
CSPI07G12270	Watermelon (97103) v2	cpiwmbB597