CsaV3_7G024280 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G024280
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionprotein MNN4-like
Locationchr7 : 13324448 .. 13324821 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCAACTGAATTTAAGAGGGTCACGAGGAAGGCCAAGAGAAGAAAGAGAAGGTAGCATATGGCCTTCTCAAATTAAAGTCATGACGCAACGTTTCAAGGCCCTTATGCAAGACAAAAAGAAAGTGAAGTTGAGGGAGCAGAAAGAGCTCCTCAACAAAATTGATCAAGCACCCATCTCTACAAAGAAGGGAAAGGTGAGAAAGACTCCTAGTGAGGAGATTTGTGAAGAGTTTGAGAGGAAGTTGGAAGATCTGAGCCCTCTGGAGGATGAAGTGGTGAAACCGTTAAAGAAGAAGGTAACGGTGAAAAAGAGTGTGTTAAAGAAACAATTTGACAAGAGGCGAGAAGAAAAAGAAAAGAAGAAAGGTCCTTAA

mRNA sequence

ATGACGCAACGTTTCAAGGCCCTTATGCAAGACAAAAAGAAAGTGAAGTTGAGGGAGCAGAAAGAGCTCCTCAACAAAATTGATCAAGCACCCATCTCTACAAAGAAGGGAAAGGTGAGAAAGACTCCTAGTGAGGAGATTTGTGAAGAGTTTGAGAGGAAGTTGGAAGATCTGAGCCCTCTGGAGGATGAAGTGGTGAAACCGTTAAAGAAGAAGGTAACGGTGAAAAAGAGTGTGTTAAAGAAACAATTTGACAAGAGGCGAGAAGAAAAAGAAAAGAAGAAAGGTCCTTAA

Coding sequence (CDS)

ATGACGCAACGTTTCAAGGCCCTTATGCAAGACAAAAAGAAAGTGAAGTTGAGGGAGCAGAAAGAGCTCCTCAACAAAATTGATCAAGCACCCATCTCTACAAAGAAGGGAAAGGTGAGAAAGACTCCTAGTGAGGAGATTTGTGAAGAGTTTGAGAGGAAGTTGGAAGATCTGAGCCCTCTGGAGGATGAAGTGGTGAAACCGTTAAAGAAGAAGGTAACGGTGAAAAAGAGTGTGTTAAAGAAACAATTTGACAAGAGGCGAGAAGAAAAAGAAAAGAAGAAAGGTCCTTAA

Protein sequence

MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPLKKKVTVKKSVLKKQFDKRREEKEKKKGP
Homology
[Close]
BLAST of CsaV3_7G024280 vs. NCBI nr
Match: KGN44432.1 (hypothetical protein Csa_7G290550 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 2.1e-36
Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 1  MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60
          MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP
Sbjct: 1  MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60

Query: 61 LEDEVVKPLKKKVTVKKSVLXXXFDXXXXXXEKKKGP 98
          LEDEVVKPLKKKVTVKKSVL X FDXXXXXXEKKKGP
Sbjct: 61 LEDEVVKPLKKKVTVKKSVLKXQFDXXXXXXEKKKGP 97

[Close]
BLAST of CsaV3_7G024280 vs. NCBI nr
Match: KGN57985.1 (hypothetical protein Csa_3G418760 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 37/61 (60.66%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 10  QDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPL 69
           Q+KK+++L+EQ+ELLNK+D+  +  KKGK ++T SEEICEE E+KLEDLSP+EDEV + L
Sbjct: 55  QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDL 114

Query: 70  K 71
           +
Sbjct: 115 R 115

[Close]
BLAST of CsaV3_7G024280 vs. NCBI nr
Match: XP_008465464.1 (PREDICTED: protein MNN4-like [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 34/61 (55.74%), Postives = 49/61 (80.33%), Query Frame = 0 

Query: 3   QRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLE 62
           Q  KAL ++KK++KLRE++ELLNK+D+  +S +K K  KT  EE CEEF++++E+LSPLE
Sbjct: 52  QGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKEEKT-FEEHCEEFKKEIEELSPLE 111

Query: 63  D 64
           D
Sbjct: 112 D 111

[Close]
BLAST of CsaV3_7G024280 vs. NCBI nr
Match: KGN44458.1 (hypothetical protein Csa_7G298750 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 3.8e-06
Identity = 35/43 (81.40%), Postives = 35/43 (81.40%), Query Frame = 0 

Query: 43 PSEEICEEFERKLEDLSPLEDEVVKPL-KKKVTVKKSVLXXXF 85
          P EEI EEFERKLEDLSPLEDEVVKPL KKKVTV K VL   F
Sbjct: 4  PIEEIFEEFERKLEDLSPLEDEVVKPLKKKKVTVNKKVLKEQF 46

[Close]
BLAST of CsaV3_7G024280 vs. TrEMBL
Match: tr|A0A0A0K7W9|A0A0A0K7W9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290550 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-36
Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0 

Query: 1  MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60
          MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP
Sbjct: 1  MTQRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSP 60

Query: 61 LEDEVVKPLKKKVTVKKSVLXXXFDXXXXXXEKKKGP 98
          LEDEVVKPLKKKVTVKKSVL X FDXXXXXXEKKKGP
Sbjct: 61 LEDEVVKPLKKKVTVKKSVLKXQFDXXXXXXEKKKGP 97

[Close]
BLAST of CsaV3_7G024280 vs. TrEMBL
Match: tr|A0A0A0L7S0|A0A0A0L7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418760 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.5e-11
Identity = 37/61 (60.66%), Postives = 52/61 (85.25%), Query Frame = 0 

Query: 10  QDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKPL 69
           Q+KK+++L+EQ+ELLNK+D+  +  KKGK ++T SEEICEE E+KLEDLSP+EDEV + L
Sbjct: 55  QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDEVEEDL 114

Query: 70  K 71
           +
Sbjct: 115 R 115

[Close]
BLAST of CsaV3_7G024280 vs. TrEMBL
Match: tr|A0A1S3CPC6|A0A1S3CPC6_CUCME (protein MNN4-like OS=Cucumis melo OX=3656 GN=LOC103503068 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.6e-07
Identity = 34/61 (55.74%), Postives = 49/61 (80.33%), Query Frame = 0 

Query: 3   QRFKALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLE 62
           Q  KAL ++KK++KLRE++ELLNK+D+  +S +K K  KT  EE CEEF++++E+LSPLE
Sbjct: 52  QGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKEEKT-FEEHCEEFKKEIEELSPLE 111

Query: 63  D 64
           D
Sbjct: 112 D 111

[Close]
BLAST of CsaV3_7G024280 vs. TrEMBL
Match: tr|A0A0A0K4R7|A0A0A0K4R7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G298750 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-06
Identity = 35/43 (81.40%), Postives = 35/43 (81.40%), Query Frame = 0 

Query: 43 PSEEICEEFERKLEDLSPLEDEVVKPL-KKKVTVKKSVLXXXF 85
          P EEI EEFERKLEDLSPLEDEVVKPL KKKVTV K VL   F
Sbjct: 4  PIEEIFEEFERKLEDLSPLEDEVVKPLKKKKVTVNKKVLKEQF 46

The following BLAST results are available for this feature:
BLAST of CsaV3_7G024280 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44432.12.1e-3697.94hypothetical protein Csa_7G290550 [Cucumis sativus][more]
KGN57985.11.1e-1060.66hypothetical protein Csa_3G418760 [Cucumis sativus][more]
XP_008465464.11.3e-0655.74PREDICTED: protein MNN4-like [Cucumis melo][more]
KGN44458.13.8e-0681.40hypothetical protein Csa_7G298750 [Cucumis sativus][more]
BLAST of CsaV3_7G024280 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G024280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G024280 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K7W9|A0A0A0K7W9_CUCSA1.4e-3697.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290550 PE=4 SV=1[more]
tr|A0A0A0L7S0|A0A0A0L7S0_CUCSA7.5e-1160.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418760 PE=4 SV=1[more]
tr|A0A1S3CPC6|A0A1S3CPC6_CUCME8.6e-0755.74protein MNN4-like OS=Cucumis melo OX=3656 GN=LOC103503068 PE=4 SV=1[more]
tr|A0A0A0K4R7|A0A0A0K4R7_CUCSA2.5e-0681.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G298750 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G024280.1CsaV3_7G024280.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G024280CSPI07G12270Wild cucumber (PI 183967)cpicucB414
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G024280Silver-seed gourdcarcucB0006
CsaV3_7G024280Cucumber (Gy14) v2cgybcucB347
CsaV3_7G024280Cucumber (Gy14) v1cgycucB080
CsaV3_7G024280Cucurbita maxima (Rimu)cmacucB0048
CsaV3_7G024280Cucurbita maxima (Rimu)cmacucB0586
CsaV3_7G024280Cucurbita maxima (Rimu)cmacucB0599
CsaV3_7G024280Cucurbita moschata (Rifu)cmocucB0034
CsaV3_7G024280Cucurbita moschata (Rifu)cmocucB0039
CsaV3_7G024280Cucurbita moschata (Rifu)cmocucB0574
CsaV3_7G024280Cucurbita pepo (Zucchini)cpecucB0732
CsaV3_7G024280Cucurbita pepo (Zucchini)cpecucB0990
CsaV3_7G024280Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G024280Melon (DHL92) v3.5.1cucmeB540
CsaV3_7G024280Melon (DHL92) v3.6.1cucmedB529
CsaV3_7G024280Watermelon (Charleston Gray)cucwcgB547
CsaV3_7G024280Watermelon (97103) v1cucwmB592
CsaV3_7G024280Watermelon (97103) v2cucwmbB593
CsaV3_7G024280Wax gourdcucwgoB733