Csa7G032790 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G032790
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 1840988 .. 1841557 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGAAGGAGGAACTGATGATAATGGGGGTGGTGCTCAGCCGCTTCTGCTTGCTTCCCTCTCCGCCCCTACTACTACTACTTCAAACAAACCCGCTGGTTTCAAGTTGATCCAGCAAATAGTTTTAAGCATTCGTTTCCTTCTGATCTGCCTCAACAGAACCAGATCGCCGCTGCCATTACTTCATACGCCCATTGACGATATAATCCCCTTGGAAGAAGAAAGGGCGGTGATTGACGATATAATCCCGTCGGAAGAAGAAAAGGAGGTCATTGATATTGCCCGTTTGGAAAAAGAAAGGGAAATGAAGAAGGATCGTCTTAAGGAGATTGTGAAAGAGAAGAATTTAGCAGCACTAGAGACGGACTTCTGCGGTGTAGGGGAGGCTGTTTCATTTCTTCATTCCCAATGGGACACACAGGTAAAAAACCTTTTTATTTTTATGTATATTGAGTTTATTCCATTATTCATGGCCTTCTTAGTGTATCAATTATTTCATAATTTTCTATATATATAATATTTTTAAATTTCGGTCAAGTTTGGTTCACATCGATATAAATCCAGTTAG

mRNA sequence

ATGTTTGAAGGAGGAACTGATGATAATGGGGGTGGTGCTCAGCCGCTTCTGCTTGCTTCCCTCTCCGCCCCTACTACTACTACTTCAAACAAACCCGCTGGTTTCAAGTTGATCCAGCAAATAGTTTTAAGCATTCGTTTCCTTCTGATCTGCCTCAACAGAACCAGATCGCCGCTGCCATTACTTCATACGCCCATTGACGATATAATCCCCTTGGAAGAAGAAAGGGCGGTGATTGACGATATAATCCCGTCGGAAGAAGAAAAGGAGGTCATTGATATTGCCCGTTTGGAAAAAGAAAGGGAAATGAAGAAGGATCGTCTTAAGGAGATTGTGAAAGAGAAGAATTTAGCAGCACTAGAGACGGACTTCTGCGGTGTAGGGGAGGCTGTTTCATTTCTTCATTCCCAATGGGACACACAGTTTGGTTCACATCGATATAAATCCAGTTAG

Coding sequence (CDS)

ATGTTTGAAGGAGGAACTGATGATAATGGGGGTGGTGCTCAGCCGCTTCTGCTTGCTTCCCTCTCCGCCCCTACTACTACTACTTCAAACAAACCCGCTGGTTTCAAGTTGATCCAGCAAATAGTTTTAAGCATTCGTTTCCTTCTGATCTGCCTCAACAGAACCAGATCGCCGCTGCCATTACTTCATACGCCCATTGACGATATAATCCCCTTGGAAGAAGAAAGGGCGGTGATTGACGATATAATCCCGTCGGAAGAAGAAAAGGAGGTCATTGATATTGCCCGTTTGGAAAAAGAAAGGGAAATGAAGAAGGATCGTCTTAAGGAGATTGTGAAAGAGAAGAATTTAGCAGCACTAGAGACGGACTTCTGCGGTGTAGGGGAGGCTGTTTCATTTCTTCATTCCCAATGGGACACACAGTTTGGTTCACATCGATATAAATCCAGTTAG

Protein sequence

MFEGGTDDNGGGAQPLLLASLSAPTTTTSNKPAGFKLIQQIVLSIRFLLICLNRTRSPLPLLHTPIDDIIPLEEERAVIDDIIPSEEEKEVIDIARLEKEREMKKDRLKEIVKEKNLAALETDFCGVGEAVSFLHSQWDTQFGSHRYKSS*

Homology

[Close]

BLAST of Csa7G032790 vs. TrEMBL
Match: A0A0A0K156_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G032790 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 4.6e-78
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1


Query: 1   MFEGGTDDNGGGAQPLLLASLSAPTTTTSNKPAGFKLIQQIVLSIRFLLICLNRTRSPLP 60
           MFEGGTDDNGGGAQPLLLASLSAPTTTTSNKPAGFKLIQQIVLSIRFLLICLNRTRSPLP
Sbjct: 1   MFEGGTDDNGGGAQPLLLASLSAPTTTTSNKPAGFKLIQQIVLSIRFLLICLNRTRSPLP 60

Query: 61  LLHTPIDDIIPLEEERAVIDDIIPSEEEKEVIDIARLEKEREMKKDRLKEIVKEKNLAAL 120
           LLHTPIDDIIPLEEERAVIDDIIPSEEEKEVIDIARLEKEREMKKDRLKEIVKEKNLAAL
Sbjct: 61  LLHTPIDDIIPLEEERAVIDDIIPSEEEKEVIDIARLEKEREMKKDRLKEIVKEKNLAAL 120

Query: 121 ETDFCGVGEAVSFLHSQWDTQFGSHRYKSS 151
           ETDFCGVGEAVSFLHSQWDTQFGSHRYKSS
Sbjct: 121 ETDFCGVGEAVSFLHSQWDTQFGSHRYKSS 150

[Close]

BLAST of Csa7G032790 vs. NCBI nr
Match: gi|700188187|gb|KGN43420.1| (hypothetical protein Csa_7G032790 [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 6.5e-78
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1


Query: 1   MFEGGTDDNGGGAQPLLLASLSAPTTTTSNKPAGFKLIQQIVLSIRFLLICLNRTRSPLP 60
           MFEGGTDDNGGGAQPLLLASLSAPTTTTSNKPAGFKLIQQIVLSIRFLLICLNRTRSPLP
Sbjct: 1   MFEGGTDDNGGGAQPLLLASLSAPTTTTSNKPAGFKLIQQIVLSIRFLLICLNRTRSPLP 60

Query: 61  LLHTPIDDIIPLEEERAVIDDIIPSEEEKEVIDIARLEKEREMKKDRLKEIVKEKNLAAL 120
           LLHTPIDDIIPLEEERAVIDDIIPSEEEKEVIDIARLEKEREMKKDRLKEIVKEKNLAAL
Sbjct: 61  LLHTPIDDIIPLEEERAVIDDIIPSEEEKEVIDIARLEKEREMKKDRLKEIVKEKNLAAL 120

Query: 121 ETDFCGVGEAVSFLHSQWDTQFGSHRYKSS 151
           ETDFCGVGEAVSFLHSQWDTQFGSHRYKSS
Sbjct: 121 ETDFCGVGEAVSFLHSQWDTQFGSHRYKSS 150

[Close]

BLAST of Csa7G032790 vs. NCBI nr
Match: gi|449453746|ref|XP_004144617.1| (PREDICTED: calcium-transporting ATPase 12, plasma membrane-type-like [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 3.1e-72
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1


Query: 1   MFEGGTDDNGGGAQPLLLASLSAPTTTTSNKPAGFKLIQQIVLSIRFLLICLNRTRSPLP 60
           MFEGGTDDNGGGAQPLLLASLSAPTTTTSNKPAGFKLIQQIVLSIRFLLICLNRTRSPLP
Sbjct: 1   MFEGGTDDNGGGAQPLLLASLSAPTTTTSNKPAGFKLIQQIVLSIRFLLICLNRTRSPLP 60

Query: 61  LLHTPIDDIIPLEEERAVIDDIIPSEEEKEVIDIARLEKEREMKKDRLKEIVKEKNLAAL 120
           LLHTPIDDIIPLEEERAVIDDIIPSEEEKEVIDIARLEKEREMKKDRLKEIVKEKNLAAL
Sbjct: 61  LLHTPIDDIIPLEEERAVIDDIIPSEEEKEVIDIARLEKEREMKKDRLKEIVKEKNLAAL 120

Query: 121 ETDFCGVGEAVSFLHSQWDTQ 142
           ETDFCGVGEAVSFLHSQWDTQ
Sbjct: 121 ETDFCGVGEAVSFLHSQWDTQ 141

The following BLAST results are available for this feature:

BLAST of Csa7G032790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K156_CUCSA	4.6e-78	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G032790 PE=4 SV=1	[more]

BLAST of Csa7G032790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188187\|gb\|KGN43420.1\|	6.5e-78	100.00	hypothetical protein Csa_7G032790 [Cucumis sativus]	[more]
gi\|449453746\|ref\|XP_004144617.1\|	3.1e-72	100.00	PREDICTED: calcium-transporting ATPase 12, plasma membrane-type-like [Cucumis sa...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000166	nucleotide binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU141681	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G032790.1	Csa7G032790.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU141681	CU141681	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 94..114 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G032790	MELO3C024203	Melon (DHL92) v3.5.1	cumeB530
Csa7G032790	ClCG02G002760	Watermelon (Charleston Gray)	cuwcgB546
Csa7G032790	Lsi11G013540	Bottle gourd (USVL1VR-Ls)	culsiB494
Csa7G032790	MELO3C024203.2	Melon (DHL92) v3.6.1	cumedB509
Csa7G032790	Bhi05G001284	Wax gourd	cuwgoB670
Csa7G032790	CSPI07G02780	Wild cucumber (PI 183967)	cpicuB354
Csa7G032790	CsGy7G002400	Cucumber (Gy14) v2	cgybcuB324
Csa7G032790	Carg04153	Silver-seed gourd	carcuB0228

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G032790	Bottle gourd (USVL1VR-Ls)	culsiB488
Csa7G032790	Cucumber (Gy14) v2	cgybcuB291
Csa7G032790	Melon (DHL92) v3.6.1	cumedB496
Csa7G032790	Silver-seed gourd	carcuB0384
Csa7G032790	Silver-seed gourd	carcuB1081
Csa7G032790	Watermelon (97103) v2	cuwmbB529
Csa7G032790	Wax gourd	cuwgoB679
Csa7G032790	Cucumber (Chinese Long) v2	cucuB171
Csa7G032790	Cucumber (Gy14) v1	cgycuB111
Csa7G032790	Cucumber (Gy14) v1	cgycuB156
Csa7G032790	Cucurbita maxima (Rimu)	cmacuB153
Csa7G032790	Cucurbita maxima (Rimu)	cmacuB527
Csa7G032790	Cucurbita maxima (Rimu)	cmacuB576
Csa7G032790	Cucurbita moschata (Rifu)	cmocuB132
Csa7G032790	Cucurbita moschata (Rifu)	cmocuB518
Csa7G032790	Cucurbita moschata (Rifu)	cmocuB565
Csa7G032790	Watermelon (97103) v1	cuwmB604
Csa7G032790	Cucurbita pepo (Zucchini)	cpecuB257
Csa7G032790	Cucurbita pepo (Zucchini)	cpecuB298
Csa7G032790	Cucurbita pepo (Zucchini)	cpecuB690