MELO3C024203.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024203.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr01 : 4271491 .. 4271859 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAATGTCTGAAGGAGCTGATGGCGGTGGTGATGCTCAGCCGCTTCTGCTGCCTTCCCCCAACCCTTCTACTACTTCATACAAACCGGCTGGTTTCAAGTTCCGGCAAATAGTTTTAGGCATTCTTTTCCTACTCTGCCTCAAAAGCAGATCGACGCTGCCATTTCATACGGTCGTCAACGTCATTGATATAATCCCTTTGGAAGAGGAAAGGGAAATGAAGAAGGGTCGTCTTAAGCAGATTGTGAAAGAGAAGAATTTAGTAGCACTAGAGAAGGAATTCGGCGGTGTAGAAGAGGCTGTTTCGTTTATGCATTCCGAATGGGACACACCGGTAACCATTTTCTTTCTACGGATACTCTAA

mRNA sequence

ATGAAAGGAATGTCTGAAGGAGCTGATGGCGGTGGTGATGCTCAGCCGCTTCTGCTGCCTTCCCCCAACCCTTCTACTACTTCATACAAACCGGCTGGTTTCAAGTTCCGGCAAATAGTTTTAGGCATTCTTTTCCTACTCTGCCTCAAAAGCAGATCGACGCTGCCATTTCATACGGTCGTCAACGTCATTGATATAATCCCTTTGGAAGAGGAAAGGGAAATGAAGAAGGGTCGTCTTAAGCAGATTGTGAAAGAGAAGAATTTAGTAGCACTAGAGAAGGAATTCGGCGGTGTAGAAGAGGCTGTTTCGTTTATGCATTCCGAATGGGACACACCGGTAACCATTTTCTTTCTACGGATACTCTAA

Coding sequence (CDS)

ATGAAAGGAATGTCTGAAGGAGCTGATGGCGGTGGTGATGCTCAGCCGCTTCTGCTGCCTTCCCCCAACCCTTCTACTACTTCATACAAACCGGCTGGTTTCAAGTTCCGGCAAATAGTTTTAGGCATTCTTTTCCTACTCTGCCTCAAAAGCAGATCGACGCTGCCATTTCATACGGTCGTCAACGTCATTGATATAATCCCTTTGGAAGAGGAAAGGGAAATGAAGAAGGGTCGTCTTAAGCAGATTGTGAAAGAGAAGAATTTAGTAGCACTAGAGAAGGAATTCGGCGGTGTAGAAGAGGCTGTTTCGTTTATGCATTCCGAATGGGACACACCGGTAACCATTTTCTTTCTACGGATACTCTAA

Protein sequence

MKGMSEGADGGGDAQPLLLPSPNPSTTSYKPAGFKFRQIVLGILFLLCLKSRSTLPFHTVVNVIDIIPLEEEREMKKGRLKQIVKEKNLVALEKEFGGVEEAVSFMHSEWDTPVTIFFLRIL

Homology

[Close]

BLAST of MELO3C024203.2 vs. NCBI nr
Match: XP_004144617.1 (PREDICTED: calcium-transporting ATPase 12, plasma membrane-type-like [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 9.5e-15
Identity = 61/114 (53.51%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 30  KPAGFK-FRQIVLGILFLL-CL-KSRSTLP-FHTVVNVIDIIPLEE-------------- 89
           KPAGFK  +QIVL I FLL CL ++RS LP  HT ++  DIIPLEE              
Sbjct: 31  KPAGFKLIQQIVLSIRFLLICLNRTRSPLPLLHTPID--DIIPLEEXXXXXXXXXXXXXX 90

Query: 90  -----------EREMKKGRLKQIVKEKNLVALEKEFGGVEEAVSFMHSEWDTPV 115
                      EREMKK RLK+IVKEKNL ALE +F GV EAVSF+HS+WDT +
Sbjct: 91  XXXXXXXRLEKEREMKKDRLKEIVKEKNLAALETDFCGVGEAVSFLHSQWDTQI 142

[Close]

BLAST of MELO3C024203.2 vs. NCBI nr
Match: KGN43420.1 (hypothetical protein Csa_7G032790 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 61/112 (54.46%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 30  KPAGFK-FRQIVLGILFLL-CL-KSRSTLP-FHTVVNVIDIIPLEE-------------- 89
           KPAGFK  +QIVL I FLL CL ++RS LP  HT ++  DIIPLEE              
Sbjct: 31  KPAGFKLIQQIVLSIRFLLICLNRTRSPLPLLHTPID--DIIPLEEXXXXXXXXXXXXXX 90

Query: 90  -----------EREMKKGRLKQIVKEKNLVALEKEFGGVEEAVSFMHSEWDT 113
                      EREMKK RLK+IVKEKNL ALE +F GV EAVSF+HS+WDT
Sbjct: 91  XXXXXXXRLEKEREMKKDRLKEIVKEKNLAALETDFCGVGEAVSFLHSQWDT 140

[Close]

BLAST of MELO3C024203.2 vs. NCBI nr
Match: XP_023554362.1 (putative calcium-transporting ATPase 13, plasma membrane-type [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.9 bits (180), Expect = 4.1e-10
Identity = 52/102 (50.98%), Postives = 69/102 (67.65%), Query Frame = 0


Query: 8   ADGGGDAQPLLLPSPNPSTTSYKPAGFKFRQIVLGILFLLCLKSRSTLPFHTVVNVIDII 67
           AD G  AQPLL+ +P+           +FRQ+VL I F+L L+ R++ P      VID +
Sbjct: 8   ADDG--AQPLLVGTPSKLV--------RFRQLVLSIRFVLSLR-RTSSPPPPQYTVID-V 67

Query: 68  PLEEEREMKKGRLKQIVKEKNLVALEKEFGGVEEAVSFMHSE 110
             E+ER+++K RLK+IVKEKNL AL K+FGGVEEAVSF+ SE
Sbjct: 68  HFEDERDIQKQRLKKIVKEKNLKAL-KDFGGVEEAVSFLRSE 96

[Close]

BLAST of MELO3C024203.2 vs. NCBI nr
Match: XP_022968951.1 (putative calcium-transporting ATPase 13, plasma membrane-type [Cucurbita maxima] >XP_022968952.1 putative calcium-transporting ATPase 13, plasma membrane-type [Cucurbita maxima])

HSP 1 Score: 73.2 bits (178), Expect = 7.0e-10
Identity = 51/104 (49.04%), Postives = 70/104 (67.31%), Query Frame = 0


Query: 8   ADGGGDAQPLLLPSPNPSTTSYKPAGFKFRQIVLGILFLLCLKSRST--LPFHTVVNVID 67
           AD G  A+PLL+ +P  +++       +FRQ+VL I F+L LK  S+   P  +   VID
Sbjct: 8   ADDG--AEPLLVATPVSNSSKL----VRFRQLVLSIRFVLSLKRTSSPPPPSPSQYTVID 67

Query: 68  IIPLEEEREMKKGRLKQIVKEKNLVALEKEFGGVEEAVSFMHSE 110
            +  E+ER+++K RLK+IVKEKNL AL K+ GGVEEAVSF+ SE
Sbjct: 68  -VHFEDERDIQKQRLKKIVKEKNLKAL-KDLGGVEEAVSFLRSE 103

[Close]

BLAST of MELO3C024203.2 vs. NCBI nr
Match: XP_022136264.1 (putative calcium-transporting ATPase 13, plasma membrane-type [Momordica charantia] >XP_022136265.1 putative calcium-transporting ATPase 13, plasma membrane-type [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 5.0e-08
Identity = 47/108 (43.52%), Postives = 61/108 (56.48%), Query Frame = 0


Query: 14  AQPLLLPSPNPSTTSYKPAGFKFRQIVLGILFLLCLKSRSTLP------------FHTVV 73
           A+PLL  +     TSYKP G  FRQ++L + F++CL+   + P             +T V
Sbjct: 15  ARPLLAVTATTGGTSYKPLG--FRQLILTVRFVICLRKTRSPPSVNQPSRTSSSRSYTAV 74

Query: 74  NVIDIIPLEEEREMKKGRLKQIVKEKNLVALEKEFGGVEEAVSFMHSE 110
            V      E+ERE+KK  LK IVK  +  ALE +FGGVE AVSFM SE
Sbjct: 75  EV-HSDDKEDEREIKKQDLKLIVKRMDFEALE-QFGGVEAAVSFMRSE 118

[Close]

BLAST of MELO3C024203.2 vs. TrEMBL
Match: tr|A0A0A0K156|A0A0A0K156_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G032790 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 61/112 (54.46%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 30  KPAGFK-FRQIVLGILFLL-CL-KSRSTLP-FHTVVNVIDIIPLEE-------------- 89
           KPAGFK  +QIVL I FLL CL ++RS LP  HT ++  DIIPLEE              
Sbjct: 31  KPAGFKLIQQIVLSIRFLLICLNRTRSPLPLLHTPID--DIIPLEEXXXXXXXXXXXXXX 90

Query: 90  -----------EREMKKGRLKQIVKEKNLVALEKEFGGVEEAVSFMHSEWDT 113
                      EREMKK RLK+IVKEKNL ALE +F GV EAVSF+HS+WDT
Sbjct: 91  XXXXXXXRLEKEREMKKDRLKEIVKEKNLAALETDFCGVGEAVSFLHSQWDT 140

The following BLAST results are available for this feature:

BLAST of MELO3C024203.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144617.1	9.5e-15	53.51	PREDICTED: calcium-transporting ATPase 12, plasma membrane-type-like [Cucumis sa...	[more]
KGN43420.1	1.6e-14	54.46	hypothetical protein Csa_7G032790 [Cucumis sativus]	[more]
XP_023554362.1	4.1e-10	50.98	putative calcium-transporting ATPase 13, plasma membrane-type [Cucurbita pepo su...	[more]
XP_022968951.1	7.0e-10	49.04	putative calcium-transporting ATPase 13, plasma membrane-type [Cucurbita maxima]...	[more]
XP_022136264.1	5.0e-08	43.52	putative calcium-transporting ATPase 13, plasma membrane-type [Momordica charant...	[more]

BLAST of MELO3C024203.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C024203.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C024203.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K156\|A0A0A0K156_CUCSA	1.1e-14	54.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G032790 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024203.2.1	MELO3C024203.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C024203.2	Csa7G032790	Cucumber (Chinese Long) v2	cumedB509

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024203.2	Cucumber (Gy14) v2	cgybmedB401
MELO3C024203.2	Cucumber (Gy14) v2	cgybmedB465
MELO3C024203.2	Cucumber (Gy14) v1	cgymedB119
MELO3C024203.2	Cucumber (Gy14) v1	cgymedB180
MELO3C024203.2	Cucurbita maxima (Rimu)	cmamedB102
MELO3C024203.2	Cucurbita maxima (Rimu)	cmamedB534
MELO3C024203.2	Cucurbita moschata (Rifu)	cmomedB096
MELO3C024203.2	Cucurbita moschata (Rifu)	cmomedB521
MELO3C024203.2	Cucurbita pepo (Zucchini)	cpemedB261
MELO3C024203.2	Cucurbita pepo (Zucchini)	cpemedB317
MELO3C024203.2	Cucurbita pepo (Zucchini)	cpemedB721
MELO3C024203.2	Wild cucumber (PI 183967)	cpimedB450
MELO3C024203.2	Wild cucumber (PI 183967)	cpimedB523
MELO3C024203.2	Cucumber (Chinese Long) v2	cumedB442
MELO3C024203.2	Melon (DHL92) v3.6.1	medmedB039
MELO3C024203.2	Bottle gourd (USVL1VR-Ls)	lsimedB067
MELO3C024203.2	Bottle gourd (USVL1VR-Ls)	lsimedB101
MELO3C024203.2	Watermelon (Charleston Gray)	medwcgB190
MELO3C024203.2	Watermelon (97103) v1	medwmB233
MELO3C024203.2	Silver-seed gourd	carmedB0204
MELO3C024203.2	Silver-seed gourd	carmedB1047
MELO3C024203.2	Cucumber (Chinese Long) v3	cucmedB459
MELO3C024203.2	Cucumber (Chinese Long) v3	cucmedB536
MELO3C024203.2	Watermelon (97103) v2	medwmbB164
MELO3C024203.2	Wax gourd	medwgoB212
MELO3C024203.2	Wax gourd	medwgoB236