Csa6G519740 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G519740
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 27701480 .. 27702041 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGACGCCGGGGCTTGGAACGGACTGGACAAGGTGGCGAGCAGTGAGGTTGTGGTGGAGAAGCATGGAATGAACTTTCTTGCTGGGAGAGGAAGTGGGGATGGTGCCCTTGGGAAGGGCGGTGAGAAAGAGGGTGTTCGGAGACGGCATGGTATTGGTAGGTAGGAGTCTGGCGGCGAGTGAAGTGGGAGCAGAGAATGCGAATAGAAGAGCTAAAATGAGAGAGAAAGTGATGAATGTGAAGCGAGGCATGGAGATTGAAAATAATTAGAGATTTTAGAGTTAAAACCGTGGTAACTTTTTGGTTATTTGAAGTTATATGGAGAAAGGGAGAGGAGGGGTTATTTATAGTATAAAGTTGGAAGGTGGAGAAAGGCATGGTGTGGGGAAGAAGCAAAGAGTCAACATCAAATGGGTTTGACTATTTGAAAATGGAGATGTGATATAAAAGTAAGTAAAGTGGAGAGATGAGTTGAACGATAGATGGTTAAGAATATGGGGAGTGGAATTTGGTGGCCGCGCCGACCATAGTATTAAGAAAAATGCAGAGATAGTCCCC

mRNA sequence

ATGGCCGACGCCGGGGCTTGGAACGGACTGGACAAGGTGGCGAGCAGTGAGGTTGTGGTGGAGAAGCATGGAATGAACTTTCTTGCTGGGAGAGGAAGTGGGGATGGTGCCCTTGGGAAGGGCGGTGAGAAAGAGGGTGTTCGGAGACGGCATGGTATTGGTAGTTATATGGAGAAAGGGAGAGGAGGGGTTATTTATAGTATAAAGTTGGAAGGTGGAGAAAGGCATGGTGTGGGGAAGAAGCAAAGAGTCAACATCAAATGGGTTTGA

Coding sequence (CDS)

ATGGCCGACGCCGGGGCTTGGAACGGACTGGACAAGGTGGCGAGCAGTGAGGTTGTGGTGGAGAAGCATGGAATGAACTTTCTTGCTGGGAGAGGAAGTGGGGATGGTGCCCTTGGGAAGGGCGGTGAGAAAGAGGGTGTTCGGAGACGGCATGGTATTGGTAGTTATATGGAGAAAGGGAGAGGAGGGGTTATTTATAGTATAAAGTTGGAAGGTGGAGAAAGGCATGGTGTGGGGAAGAAGCAAAGAGTCAACATCAAATGGGTTTGA

Protein sequence

MADAGAWNGLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKGRGGVIYSIKLEGGERHGVGKKQRVNIKWV*
Homology
[Close]
BLAST of Csa6G519740 vs. TrEMBL
Match: A0A0A0KIB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G519740 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.3e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

Query: 1  MADAGAWNGLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKG 60
          MADAGAWNGLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKG
Sbjct: 1  MADAGAWNGLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKG 60

Query: 61 RGGVIYSIKLEGGERHGVGKKQRVNIKWV 90
          RGGVIYSIKLEGGERHGVGKKQRVNIKWV
Sbjct: 61 RGGVIYSIKLEGGERHGVGKKQRVNIKWV 89

[Close]
BLAST of Csa6G519740 vs. NCBI nr
Match: gi|700194119|gb|KGN49323.1| (hypothetical protein Csa_6G519740 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 4.8e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

Query: 1  MADAGAWNGLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKG 60
          MADAGAWNGLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKG
Sbjct: 1  MADAGAWNGLDKVASSEVVVEKHGMNFLAGRGSGDGALGKGGEKEGVRRRHGIGSYMEKG 60

Query: 61 RGGVIYSIKLEGGERHGVGKKQRVNIKWV 90
          RGGVIYSIKLEGGERHGVGKKQRVNIKWV
Sbjct: 61 RGGVIYSIKLEGGERHGVGKKQRVNIKWV 89

The following BLAST results are available for this feature:
BLAST of Csa6G519740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIB1_CUCSA3.3e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G519740 PE=4 SV=1[more]
BLAST of Csa6G519740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194119|gb|KGN49323.1|4.8e-44100.00hypothetical protein Csa_6G519740 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU140092cucumber EST collection version 3.0transcribed_cluster
CU157297cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G519740.1Csa6G519740.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU157297CU157297transcribed_cluster
CU140092CU140092transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G519740MELO3C007198Melon (DHL92) v3.5.1cumeB507
Csa6G519740ClCG01G023910Watermelon (Charleston Gray)cuwcgB432
Csa6G519740MELO3C007198.2Melon (DHL92) v3.6.1cumedB486
Csa6G519740Bhi07G000176Wax gourdcuwgoB642
Csa6G519740CSPI06G35550Wild cucumber (PI 183967)cpicuB313
Csa6G519740CsGy6G035040Cucumber (Gy14) v2cgybcuB281
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G519740Watermelon (97103) v2cuwmbB412
Csa6G519740Watermelon (97103) v2cuwmbB453
Csa6G519740Wax gourdcuwgoB565
Csa6G519740Wax gourdcuwgoB637
Csa6G519740Cucumber (Chinese Long) v2cucuB038
Csa6G519740Cucumber (Gy14) v1cgycuB027
Csa6G519740Cucumber (Gy14) v1cgycuB316
Csa6G519740Cucurbita maxima (Rimu)cmacuB229
Csa6G519740Cucurbita maxima (Rimu)cmacuB422
Csa6G519740Cucurbita maxima (Rimu)cmacuB526
Csa6G519740Cucurbita maxima (Rimu)cmacuB678
Csa6G519740Cucurbita maxima (Rimu)cmacuB877
Csa6G519740Cucurbita moschata (Rifu)cmocuB127
Csa6G519740Cucurbita moschata (Rifu)cmocuB215
Csa6G519740Cucurbita moschata (Rifu)cmocuB412
Csa6G519740Cucurbita moschata (Rifu)cmocuB667
Csa6G519740Cucurbita moschata (Rifu)cmocuB865
Csa6G519740Melon (DHL92) v3.5.1cumeB458
Csa6G519740Watermelon (Charleston Gray)cuwcgB462
Csa6G519740Watermelon (Charleston Gray)cuwcgB493
Csa6G519740Watermelon (97103) v1cuwmB480
Csa6G519740Watermelon (97103) v1cuwmB491
Csa6G519740Watermelon (97103) v1cuwmB500
Csa6G519740Cucurbita pepo (Zucchini)cpecuB051
Csa6G519740Cucurbita pepo (Zucchini)cpecuB087
Csa6G519740Cucurbita pepo (Zucchini)cpecuB254
Csa6G519740Cucurbita pepo (Zucchini)cpecuB503
Csa6G519740Cucurbita pepo (Zucchini)cpecuB525
Csa6G519740Bottle gourd (USVL1VR-Ls)culsiB434
Csa6G519740Bottle gourd (USVL1VR-Ls)culsiB438
Csa6G519740Cucumber (Gy14) v2cgybcuB043
Csa6G519740Melon (DHL92) v3.6.1cumedB438
Csa6G519740Silver-seed gourdcarcuB0169
Csa6G519740Silver-seed gourdcarcuB0578
Csa6G519740Silver-seed gourdcarcuB0816
Csa6G519740Silver-seed gourdcarcuB0972