Csa6G501990 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G501990
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Homeobox-leucine zipper protein; contains IPR009057 (Homeodomain-like)
Location	Chr6 : 25231426 .. 25233079 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAGTAGTAAAATAAATTCTTCCCATATTCCGAAATTCCGAATATATTTCATTTTATTCCCTCTATAAATAAGTTGCAACGCAATTCCCGTGTAAACCATCCCCCCAAACTTCTCTCAAACCTATCCACATACCAAAACTCATAAACAATCAAACAAATAACGAAAAAAATCCACCGCCGGTGACAATGGCCGCCGTGAATCTCCGACCGGACGCCGACAACTCATTACTCGTTTCCCATCTCTACAACCCTGAAGTTTACACCCAACAAGTGTTACCCCAACAAGGTAAATAATTAATTTTCTTACAAAATTTCATCTCGAAGTATACTTTATTTTTAATTTTCAAATTTATGTTTTTAGGTACGGGAGAGGGAAGTAAGCCGACGAAGCGACGGAGGAGGAGGAGCAAAGCGAAGGAGGGAGGCGGGGCGGCGGGGTTGAAGAAGAGGAAGCTGAGTTCAGAGCAAGTGAAGCTTTTGGAGATGAATTTTGGGAATGAACATAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCACGGCAGGTGGCGGTTTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAGCTGGAAGAGGAATATTCCACTCTTAAAAAAGCTCATGATTCTGTTGTTCTACAAAAATCCCATCTTGAATCTGAGGTCAGTTTTATTATAAATTTTTCTTTTTCTTTCTTTTAATTTGGCATATTAATGATTTTTTCTCCAAAAATTACGTACGGTCAGAGAGTTATAATTTGTTTGACCTTATCGTTAATTTTGTAGTACTAAAAATAAAACTGGATTTTGATTTGCTTATCTAGTAAGAAATGAACGAAATTTGGTAAACAAAATAACAATGTTTTTTTATTTTTTAAAATAAAAATTTGAAAGGAATAAAAAAGAAGAACGTGCATGAGCTCTTGGCTCGAAGAATATGATGCCACCTTATAGGGTTTGGAATTTGTAAAATAATAAATAATATAAAAAAATCAATTTCTTCCCTAAAAAAACTCAGAAACTTTTCTTTTTCTTTTTCTTTTTTTTCCATTAACGTACAGCTTACTGCCATCTGAGGCAAATATAAATGGGATAACAACCTCTCTCTTCTCTCTTTAGACAATGATCCGTACACCATCTTAATATATATATCTATTTATAACTCTATAACAGTTCTTATAATAATTTGTTTAAATCTAATTAATTGTTTTGTTTGGTTTGATTTAGTTGATGAAAGTGAAAGAGCAGTTGAAAGAAGCAAAGAATGAGATACGAAAAATGGTAGAAGGAAGTGAGGTGAGAAATAATTCAAGCAATAGTCCAAGCTCTTCAGTGACGATGGAAGCAGTTGAGGAAGCAGCAGTAGTTCCTTTGGGGGAGCTTTTTTTTGAAGAATATGAAGATGTATTCTATTGCATGCAAGACAACAATTACAATCAAGGATTGAACTGGGCGCTTAATCTTAATTTTATGTAGATTAATTATATTTATTATATCTAATTAATCACTCTCTTTTAATTTTAGTTTGTGGATATAGAACCCTCATAGATTATATTAGATCATCTCTAGCTTAATATGTACATTTCTCTCTCTCCCTCTCTCTAACTAGTGTTATTTTTCAGAACTTG

mRNA sequence

ATGGCCGCCGTGAATCTCCGACCGGACGCCGACAACTCATTACTCGTTTCCCATCTCTACAACCCTGAAGTTTACACCCAACAAGTGTTACCCCAACAAGGTACGGGAGAGGGAAGTAAGCCGACGAAGCGACGGAGGAGGAGGAGCAAAGCGAAGGAGGGAGGCGGGGCGGCGGGGTTGAAGAAGAGGAAGCTGAGTTCAGAGCAAGTGAAGCTTTTGGAGATGAATTTTGGGAATGAACATAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCACGGCAGGTGGCGGTTTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAGCTGGAAGAGGAATATTCCACTCTTAAAAAAGCTCATGATTCTGTTGTTCTACAAAAATCCCATCTTGAATCTGAGTTGATGAAAGTGAAAGAGCAGTTGAAAGAAGCAAAGAATGAGATACGAAAAATGGTAGAAGGAAGTGAGGTGAGAAATAATTCAAGCAATAGTCCAAGCTCTTCAGTGACGATGGAAGCAGTTGAGGAAGCAGCAGTAGTTCCTTTGGGGGAGCTTTTTTTTGAAGAATATGAAGATGTATTCTATTGCATGCAAGACAACAATTACAATCAAGGATTGAACTGGGCGCTTAATCTTAATTTTATGTAG

Coding sequence (CDS)

ATGGCCGCCGTGAATCTCCGACCGGACGCCGACAACTCATTACTCGTTTCCCATCTCTACAACCCTGAAGTTTACACCCAACAAGTGTTACCCCAACAAGGTACGGGAGAGGGAAGTAAGCCGACGAAGCGACGGAGGAGGAGGAGCAAAGCGAAGGAGGGAGGCGGGGCGGCGGGGTTGAAGAAGAGGAAGCTGAGTTCAGAGCAAGTGAAGCTTTTGGAGATGAATTTTGGGAATGAACATAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCACGGCAGGTGGCGGTTTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAGCTGGAAGAGGAATATTCCACTCTTAAAAAAGCTCATGATTCTGTTGTTCTACAAAAATCCCATCTTGAATCTGAGTTGATGAAAGTGAAAGAGCAGTTGAAAGAAGCAAAGAATGAGATACGAAAAATGGTAGAAGGAAGTGAGGTGAGAAATAATTCAAGCAATAGTCCAAGCTCTTCAGTGACGATGGAAGCAGTTGAGGAAGCAGCAGTAGTTCCTTTGGGGGAGCTTTTTTTTGAAGAATATGAAGATGTATTCTATTGCATGCAAGACAACAATTACAATCAAGGATTGAACTGGGCGCTTAATCTTAATTTTATGTAG

Protein sequence

MAAVNLRPDADNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSKAKEGGGAAGLKKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTMEAVEEAAVVPLGELFFEEYEDVFYCMQDNNYNQGLNWALNLNFM*

Homology

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BLAST of Csa6G501990 vs. Swiss-Prot
Match: ATB40_ARATH (Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 SV=3)

HSP 1 Score: 199.1 bits (505), Expect = 5.0e-50
Identity = 116/220 (52.73%), Postives = 152/220 (69.09%), Query Frame = 1


Query: 4   VNLRPDADNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSK---AKEGGGAAGL 63
           +N   D  N   +S LY P+VYTQ V P    GE  +P KRRR+++K   A   GG    
Sbjct: 1   MNYTVDDQNMAFISQLY-PDVYTQIVQP----GEVKQP-KRRRKKTKGSVASADGGNGLF 60

Query: 64  KKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEE 123
           +KRKL+ EQV +LEM+FG+EHKLESERKDRLA+ELGLDPRQVAVWFQNRRARWKNK+LEE
Sbjct: 61  RKRKLTDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEE 120

Query: 124 EYSTLKKAHDSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSP-SSSVT 183
           EY+ LK +HD+VV+ K  LESE++++KEQL +A+ EI+++ E   V   SSNSP SSSV+
Sbjct: 121 EYNKLKNSHDNVVVDKCRLESEVIQLKEQLYDAEREIQRLAE--RVEGGSSNSPISSSVS 180

Query: 184 MEAVEEA--AVVPLGELFFEEYEDVFYCMQDNNYNQGLNW 218
           +EA E        +G+   ++Y+ +FY + +N+Y     W
Sbjct: 181 VEANETPFFGDYKVGD-DGDDYDHLFYPVPENSYIDEAEW 211

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BLAST of Csa6G501990 vs. Swiss-Prot
Match: ATB21_ARATH (Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana GN=ATHB-21 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.8e-47
Identity = 119/226 (52.65%), Postives = 152/226 (67.26%), Query Frame = 1


Query: 5   NLRPDADNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSK----AKEGG--GAA 64
           N   D  N LL+S LY P VYT  V PQQG GE +KPT+RR+R+SK    A+EG   G  
Sbjct: 3   NQNVDDHNLLLISQLY-PNVYTPLV-PQQG-GE-AKPTRRRKRKSKSVVVAEEGENEGNG 62

Query: 65  GLKKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKL 124
             +KRKLS EQV++LE++F ++HKLESERKDRLASELGLDPRQVAVWFQNRRARWKNK++
Sbjct: 63  WFRKRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRV 122

Query: 125 EEEYSTLKKAHDSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSP-SSS 184
           E+EY+ LK A+++ V++K  L+SE++ +KEQL EA+ EI+++ +   V    SNSP SSS
Sbjct: 123 EDEYTKLKNAYETTVVEKCRLDSEVIHLKEQLYEAEREIQRLAK--RVEGTLSNSPISSS 182

Query: 185 VTMEAVEEAAVVPLGELFFEEYEDVFYCMQDNN------YNQGLNW 218
           VT+EA            FF +Y+  F    D N      Y  GL+W
Sbjct: 183 VTIEANHTTP-------FFGDYDIGFDGEADENLLYSPDYIDGLDW 215

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BLAST of Csa6G501990 vs. Swiss-Prot
Match: ATB53_ARATH (Homeobox-leucine zipper protein ATHB-53 OS=Arabidopsis thaliana GN=ATHB-53 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-43
Identity = 110/221 (49.77%), Postives = 139/221 (62.90%), Query Frame = 1


Query: 11  DNSLLVSHLYNPEVYTQQ----VLPQQGTGEGSKPTKRRR-RRSKAK---------EGGG 70
           D  +L S +Y      Q     ++ Q   GE SKP KRRR RRSK           E GG
Sbjct: 9   DQMMLGSQVYPYTTQPQNSHCIIVNQIDGGEESKPVKRRRKRRSKGSSATNEEDVAEIGG 68

Query: 71  AAGLKKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNK 130
              L+KRKL+ EQV +LE +FGNEHKLES RK+++A ELGLDPRQVAVWFQNRRARWKNK
Sbjct: 69  M--LRKRKLTDEQVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNK 128

Query: 131 KLEEEYSTLKKAHDSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSS 190
           KLEEEY+ LK  HD+VVL +  LES+++K+ EQL EA++EIRK+ E   +    +NS SS
Sbjct: 129 KLEEEYAKLKNHHDNVVLGQCQLESQILKLTEQLSEAQSEIRKLSE--RLEEMPTNSSSS 188

Query: 191 SVTMEAVEEAAVVPLGELFFEEYEDVFYCMQDNNYNQGLNW 218
           S+++EA          EL  E   ++ + M DNNY Q + +
Sbjct: 189 SLSVEANNAPTDF---ELAPETNYNIPFYMLDNNYLQSMEY 222

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BLAST of Csa6G501990 vs. Swiss-Prot
Match: HOX14_ORYSJ (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. japonica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.9e-33
Identity = 75/140 (53.57%), Postives = 98/140 (70.00%), Query Frame = 1


Query: 29  VLPQQGTGEGSKPTKRRRRRSKAKEGGGAAG--------LKKRKLSSEQVKLLEMNFGNE 88
           +L   G  +G +P  RRRRR  A+  GG  G         KKR+LS EQV++LE++F  E
Sbjct: 22  LLAASGEVQGERPRARRRRRRGARCVGGGGGGGEVDGGDPKKRRLSDEQVEMLELSFREE 81

Query: 89  HKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSVVLQKSHLE 148
            KLE+ RK  LASELGLDP+QVAVWFQNRRAR K+K LEEE+S LK AHD+ +L K HLE
Sbjct: 82  RKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLE 141

Query: 149 SELMKVKEQLKEAKNEIRKM 161
           +E++++KE+L  A+ E+R++
Sbjct: 142 NEVLRLKERLVVAEEEVRRL 161

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BLAST of Csa6G501990 vs. Swiss-Prot
Match: HOX14_ORYSI (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. indica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.9e-33
Identity = 75/140 (53.57%), Postives = 98/140 (70.00%), Query Frame = 1


Query: 29  VLPQQGTGEGSKPTKRRRRRSKAKEGGGAAG--------LKKRKLSSEQVKLLEMNFGNE 88
           +L   G  +G +P  RRRRR  A+  GG  G         KKR+LS EQV++LE++F  E
Sbjct: 22  LLAASGEVQGERPRARRRRRRGARCVGGGGGGGEVDGGDPKKRRLSDEQVEMLELSFREE 81

Query: 89  HKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSVVLQKSHLE 148
            KLE+ RK  LASELGLDP+QVAVWFQNRRAR K+K LEEE+S LK AHD+ +L K HLE
Sbjct: 82  RKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLE 141

Query: 149 SELMKVKEQLKEAKNEIRKM 161
           +E++++KE+L  A+ E+R++
Sbjct: 142 NEVLRLKERLVVAEEEVRRL 161

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BLAST of Csa6G501990 vs. TrEMBL
Match: A0A0A0KGE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501990 PE=4 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 2.6e-122
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1


Query: 1   MAAVNLRPDADNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSKAKEGGGAAGL 60
           MAAVNLRPDADNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSKAKEGGGAAGL
Sbjct: 1   MAAVNLRPDADNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSKAKEGGGAAGL 60

Query: 61  KKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEE 120
           KKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEE
Sbjct: 61  KKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEE 120

Query: 121 EYSTLKKAHDSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTM 180
           EYSTLKKAHDSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTM
Sbjct: 121 EYSTLKKAHDSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTM 180

Query: 181 EAVEEAAVVPLGELFFEEYEDVFYCMQDNNYNQGLNWALNLNFM 225
           EAVEEAAVVPLGELFFEEYEDVFYCMQDNNYNQGLNWALNLNFM
Sbjct: 181 EAVEEAAVVPLGELFFEEYEDVFYCMQDNNYNQGLNWALNLNFM 224

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BLAST of Csa6G501990 vs. TrEMBL
Match: M5WGL9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011343mg PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 8.0e-63
Identity = 135/207 (65.22%), Postives = 162/207 (78.26%), Query Frame = 1


Query: 11  DNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSKAKEGGGAAGLKKRKLSSEQV 70
           D+ LL+SHLY  +VYTQ ++PQQG    SKP KRRR++SK+ E GGA GLKKRKL++EQV
Sbjct: 14  DHMLLISHLYPSDVYTQ-IVPQQGA---SKP-KRRRKKSKSGEAGGA-GLKKRKLTAEQV 73

Query: 71  KLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHD 130
            LLE+NFGNEHKLESE+KDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYS LKK HD
Sbjct: 74  NLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKEHD 133

Query: 131 SVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTMEAVEEAAVVP 190
           S V +   LESE+ K+KEQ+ EA+ EIR++ E  +    SSNSPSSS++M+A++      
Sbjct: 134 STVSENRKLESEMSKLKEQISEAEKEIRRLSERVD-HGGSSNSPSSSLSMDAIDPPF--- 193

Query: 191 LGELFFEEYEDVFYCMQDNNYNQGLNW 218
           LGE   EEY+DVFY M  NNY  G+ W
Sbjct: 194 LGEFGVEEYDDVFY-MPQNNYIHGMEW 209

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BLAST of Csa6G501990 vs. TrEMBL
Match: W9RLH1_9ROSA (Homeobox-leucine zipper protein ATHB-40 OS=Morus notabilis GN=L484_009043 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.2e-61
Identity = 135/214 (63.08%), Postives = 167/214 (78.04%), Query Frame = 1


Query: 4   VNLRPDADNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSKAKEGGGAAGLKKR 63
           +N + D D+  L+S LY P VYTQ V PQQG    +KP +RRRR++K+ EGGG A  KKR
Sbjct: 1   MNNQIDEDHMALISQLY-PGVYTQMV-PQQGE---AKP-RRRRRKNKSGEGGGCAAAKKR 60

Query: 64  KLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYS 123
           KLSSEQV LLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYS
Sbjct: 61  KLSSEQVNLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYS 120

Query: 124 TLKKAHDSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTMEAV 183
           TLKK HD+VV++K  LESE++++KEQ+ +AK EI+++ E +E    SSNSPSSS+++EAV
Sbjct: 121 TLKKMHDNVVVEKCRLESEVLQLKEQIMDAKKEIQRLAERAE--GVSSNSPSSSLSVEAV 180

Query: 184 EEAAVVPLGELFFEEYEDVFYCMQDNNYNQGLNW 218
           E   +   G +  E Y+++FY   +NNY  G+ W
Sbjct: 181 EPPFLGEFG-VVSEGYDNMFYA-AENNYIHGMEW 204

[Close]

BLAST of Csa6G501990 vs. TrEMBL
Match: A0A067KIZ9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12260 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.3e-57
Identity = 130/208 (62.50%), Postives = 154/208 (74.04%), Query Frame = 1


Query: 11  DNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSKAKEG-GGAAGLKKRKLSSEQ 70
           D+ +L+S LY P VYTQ V PQQG        K RRRR K K G GG  G KKRKLSSEQ
Sbjct: 11  DHMVLLSQLY-PGVYTQMV-PQQGEA------KPRRRRKKNKGGEGGVGGAKKRKLSSEQ 70

Query: 71  VKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAH 130
           V LLE NFGNEHKLESERKD+LASELGLDPRQVAVWFQNRRARWKNKKLEEEY+ LK AH
Sbjct: 71  VNLLEKNFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKNKKLEEEYTKLKTAH 130

Query: 131 DSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTMEAVEEAAVV 190
           +S+V++K  LESE++K+KEQL EA+NEI ++ E   +   SSNSPSS+++MEA++     
Sbjct: 131 ESIVVEKCRLESEVLKLKEQLSEAENEIHRLTE--RIDGVSSNSPSSTLSMEAMKPTF-- 190

Query: 191 PLGELFFEEYEDVFYCMQDNNYNQGLNW 218
            LGE   E Y D+FY M +N Y  G+ W
Sbjct: 191 -LGEFGMEGYGDIFY-MPENYYIHGMEW 204

[Close]

BLAST of Csa6G501990 vs. TrEMBL
Match: A0A103Y578_CYNCS (Helix-turn-helix motif-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_018965 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.3e-56
Identity = 126/220 (57.27%), Postives = 157/220 (71.36%), Query Frame = 1


Query: 5   NLRPDADNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSKAKEGGGAAGLKKRK 64
           N++  AD+ +++   Y P +Y  Q++P+QG     +  K RRRR K+K  GG++G+KKRK
Sbjct: 4   NMKTQADDQMVLLSQYYPGIY-DQLMPEQG-----EVVKPRRRRKKSKTDGGSSGMKKRK 63

Query: 65  LSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYST 124
           LS EQV LLE NFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWK+KKLEEEYS 
Sbjct: 64  LSDEQVNLLEQNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSK 123

Query: 125 LKKAHDSVVLQKSHLESE-------LMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSS 184
           LK  HDS VL+K  LE+E       ++K+KEQL EA+ EI ++VE S+    SS SPSSS
Sbjct: 124 LKSEHDSTVLEKCRLETEVNHRSVQVLKLKEQLSEAEKEINRLVERSD--GISSTSPSSS 183

Query: 185 VTMEAVEEAAVVPLGELFFEEYEDVFYCMQDNNYNQGLNW 218
            +MEA+E      LG    E  E+VF C+ +NNY  GL+W
Sbjct: 184 FSMEAMEPPF---LGGFGMEGLENVF-CLPENNYIHGLDW 211

[Close]

BLAST of Csa6G501990 vs. TAIR10
Match: AT4G36740.1 (AT4G36740.1 homeobox protein 40)

HSP 1 Score: 199.1 bits (505), Expect = 2.8e-51
Identity = 116/220 (52.73%), Postives = 152/220 (69.09%), Query Frame = 1


Query: 4   VNLRPDADNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSK---AKEGGGAAGL 63
           +N   D  N   +S LY P+VYTQ V P    GE  +P KRRR+++K   A   GG    
Sbjct: 1   MNYTVDDQNMAFISQLY-PDVYTQIVQP----GEVKQP-KRRRKKTKGSVASADGGNGLF 60

Query: 64  KKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEE 123
           +KRKL+ EQV +LEM+FG+EHKLESERKDRLA+ELGLDPRQVAVWFQNRRARWKNK+LEE
Sbjct: 61  RKRKLTDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEE 120

Query: 124 EYSTLKKAHDSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSP-SSSVT 183
           EY+ LK +HD+VV+ K  LESE++++KEQL +A+ EI+++ E   V   SSNSP SSSV+
Sbjct: 121 EYNKLKNSHDNVVVDKCRLESEVIQLKEQLYDAEREIQRLAE--RVEGGSSNSPISSSVS 180

Query: 184 MEAVEEA--AVVPLGELFFEEYEDVFYCMQDNNYNQGLNW 218
           +EA E        +G+   ++Y+ +FY + +N+Y     W
Sbjct: 181 VEANETPFFGDYKVGD-DGDDYDHLFYPVPENSYIDEAEW 211

[Close]

BLAST of Csa6G501990 vs. TAIR10
Match: AT2G18550.1 (AT2G18550.1 homeobox protein 21)

HSP 1 Score: 190.7 bits (483), Expect = 1.0e-48
Identity = 119/226 (52.65%), Postives = 152/226 (67.26%), Query Frame = 1


Query: 5   NLRPDADNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSK----AKEGG--GAA 64
           N   D  N LL+S LY P VYT  V PQQG GE +KPT+RR+R+SK    A+EG   G  
Sbjct: 3   NQNVDDHNLLLISQLY-PNVYTPLV-PQQG-GE-AKPTRRRKRKSKSVVVAEEGENEGNG 62

Query: 65  GLKKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKL 124
             +KRKLS EQV++LE++F ++HKLESERKDRLASELGLDPRQVAVWFQNRRARWKNK++
Sbjct: 63  WFRKRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRV 122

Query: 125 EEEYSTLKKAHDSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSP-SSS 184
           E+EY+ LK A+++ V++K  L+SE++ +KEQL EA+ EI+++ +   V    SNSP SSS
Sbjct: 123 EDEYTKLKNAYETTVVEKCRLDSEVIHLKEQLYEAEREIQRLAK--RVEGTLSNSPISSS 182

Query: 185 VTMEAVEEAAVVPLGELFFEEYEDVFYCMQDNN------YNQGLNW 218
           VT+EA            FF +Y+  F    D N      Y  GL+W
Sbjct: 183 VTIEANHTTP-------FFGDYDIGFDGEADENLLYSPDYIDGLDW 215

[Close]

BLAST of Csa6G501990 vs. TAIR10
Match: AT5G66700.1 (AT5G66700.1 homeobox 53)

HSP 1 Score: 177.9 bits (450), Expect = 6.8e-45
Identity = 110/221 (49.77%), Postives = 139/221 (62.90%), Query Frame = 1


Query: 11  DNSLLVSHLYNPEVYTQQ----VLPQQGTGEGSKPTKRRR-RRSKAK---------EGGG 70
           D  +L S +Y      Q     ++ Q   GE SKP KRRR RRSK           E GG
Sbjct: 9   DQMMLGSQVYPYTTQPQNSHCIIVNQIDGGEESKPVKRRRKRRSKGSSATNEEDVAEIGG 68

Query: 71  AAGLKKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNK 130
              L+KRKL+ EQV +LE +FGNEHKLES RK+++A ELGLDPRQVAVWFQNRRARWKNK
Sbjct: 69  M--LRKRKLTDEQVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNK 128

Query: 131 KLEEEYSTLKKAHDSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSS 190
           KLEEEY+ LK  HD+VVL +  LES+++K+ EQL EA++EIRK+ E   +    +NS SS
Sbjct: 129 KLEEEYAKLKNHHDNVVLGQCQLESQILKLTEQLSEAQSEIRKLSE--RLEEMPTNSSSS 188

Query: 191 SVTMEAVEEAAVVPLGELFFEEYEDVFYCMQDNNYNQGLNW 218
           S+++EA          EL  E   ++ + M DNNY Q + +
Sbjct: 189 SLSVEANNAPTDF---ELAPETNYNIPFYMLDNNYLQSMEY 222

[Close]

BLAST of Csa6G501990 vs. TAIR10
Match: AT4G40060.1 (AT4G40060.1 homeobox protein 16)

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-25
Identity = 65/143 (45.45%), Postives = 85/143 (59.44%), Query Frame = 1


Query: 61  KKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEE 120
           KKR+L  +QVK LE NF  E+KLE ERK +LA ELGL PRQVAVWFQNRRARWK K+LE+
Sbjct: 59  KKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEK 118

Query: 121 EYSTLKKAHDSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTM 180
           +Y  LK  +DS+     H    L +  + L +  ++I+  V G E  NN++ + +  V  
Sbjct: 119 DYGVLKGQYDSL----RHNFDSLRRDNDSLLQEISKIKAKVNGEE-DNNNNKAITEGVKE 178

Query: 181 EAVEEAAVVPLGELFFEEYEDVF 204
           E V +   +P   L F E+   F
Sbjct: 179 EEVHKTDSIPSSPLQFLEHSSGF 196

[Close]

BLAST of Csa6G501990 vs. TAIR10
Match: AT1G69780.1 (AT1G69780.1 Homeobox-leucine zipper protein family)

HSP 1 Score: 108.2 bits (269), Expect = 6.6e-24
Identity = 59/128 (46.09%), Postives = 78/128 (60.94%), Query Frame = 1


Query: 53  EGGGAAGLKKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRAR 112
           + G   G KKR+L+ EQVK LE NF   +KLE ERK +LA  LGL PRQ+A+WFQNRRAR
Sbjct: 77  DDGSQMGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRAR 136

Query: 113 WKNKKLEEEYSTLKKAHDSVVLQKSHLESELMKVKEQLKEAKN-------EIRKMVEGSE 172
           WK K+LE++Y TLK+  D++  +   L++   K++ ++   KN        + K  EGS 
Sbjct: 137 WKTKQLEKDYDTLKRQFDTLKAENDLLQTHNQKLQAEIMGLKNREQTESINLNKETEGS- 196

Query: 173 VRNNSSNS 174
             N S NS
Sbjct: 197 CSNRSDNS 203

[Close]

BLAST of Csa6G501990 vs. NCBI nr
Match: gi|449451501|ref|XP_004143500.1| (PREDICTED: homeobox-leucine zipper protein ATHB-40 [Cucumis sativus])

HSP 1 Score: 446.0 bits (1146), Expect = 3.8e-122
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1


Query: 1   MAAVNLRPDADNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSKAKEGGGAAGL 60
           MAAVNLRPDADNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSKAKEGGGAAGL
Sbjct: 1   MAAVNLRPDADNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSKAKEGGGAAGL 60

Query: 61  KKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEE 120
           KKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEE
Sbjct: 61  KKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEE 120

Query: 121 EYSTLKKAHDSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTM 180
           EYSTLKKAHDSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTM
Sbjct: 121 EYSTLKKAHDSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTM 180

Query: 181 EAVEEAAVVPLGELFFEEYEDVFYCMQDNNYNQGLNWALNLNFM 225
           EAVEEAAVVPLGELFFEEYEDVFYCMQDNNYNQGLNWALNLNFM
Sbjct: 181 EAVEEAAVVPLGELFFEEYEDVFYCMQDNNYNQGLNWALNLNFM 224

[Close]

BLAST of Csa6G501990 vs. NCBI nr
Match: gi|659081044|ref|XP_008441120.1| (PREDICTED: homeobox-leucine zipper protein ATHB-40, partial [Cucumis melo])

HSP 1 Score: 404.1 bits (1037), Expect = 1.6e-109
Identity = 206/214 (96.26%), Postives = 210/214 (98.13%), Query Frame = 1


Query: 12  NSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSKAKEGGGAAG-LKKRKLSSEQV 71
           NSLL SHLYNPEVYT QVLPQQGTGEG+KPTKRRRRRSKAKEGGG AG LKKRKLSSEQV
Sbjct: 13  NSLLSSHLYNPEVYT-QVLPQQGTGEGNKPTKRRRRRSKAKEGGGGAGSLKKRKLSSEQV 72

Query: 72  KLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHD 131
           KLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHD
Sbjct: 73  KLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHD 132

Query: 132 SVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTMEAVEEAAVVP 191
           SV+LQKSHLESEL+KVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTMEAVEEAAVVP
Sbjct: 133 SVLLQKSHLESELVKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTMEAVEEAAVVP 192

Query: 192 LGELFFEEYEDVFYCMQDNNYNQGLNWALNLNFM 225
           LGELFFEEYEDVFYCMQDNNYNQGL+WALNLNFM
Sbjct: 193 LGELFFEEYEDVFYCMQDNNYNQGLDWALNLNFM 225

[Close]

BLAST of Csa6G501990 vs. NCBI nr
Match: gi|595820944|ref|XP_007204731.1| (hypothetical protein PRUPE_ppa011343mg [Prunus persica])

HSP 1 Score: 248.4 bits (633), Expect = 1.2e-62
Identity = 135/207 (65.22%), Postives = 162/207 (78.26%), Query Frame = 1


Query: 11  DNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSKAKEGGGAAGLKKRKLSSEQV 70
           D+ LL+SHLY  +VYTQ ++PQQG    SKP KRRR++SK+ E GGA GLKKRKL++EQV
Sbjct: 14  DHMLLISHLYPSDVYTQ-IVPQQGA---SKP-KRRRKKSKSGEAGGA-GLKKRKLTAEQV 73

Query: 71  KLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHD 130
            LLE+NFGNEHKLESE+KDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYS LKK HD
Sbjct: 74  NLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKEHD 133

Query: 131 SVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTMEAVEEAAVVP 190
           S V +   LESE+ K+KEQ+ EA+ EIR++ E  +    SSNSPSSS++M+A++      
Sbjct: 134 STVSENRKLESEMSKLKEQISEAEKEIRRLSERVD-HGGSSNSPSSSLSMDAIDPPF--- 193

Query: 191 LGELFFEEYEDVFYCMQDNNYNQGLNW 218
           LGE   EEY+DVFY M  NNY  G+ W
Sbjct: 194 LGEFGVEEYDDVFY-MPQNNYIHGMEW 209

[Close]

BLAST of Csa6G501990 vs. NCBI nr
Match: gi|703111325|ref|XP_010099829.1| (Homeobox-leucine zipper protein ATHB-40 [Morus notabilis])

HSP 1 Score: 244.6 bits (623), Expect = 1.7e-61
Identity = 135/214 (63.08%), Postives = 167/214 (78.04%), Query Frame = 1


Query: 4   VNLRPDADNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSKAKEGGGAAGLKKR 63
           +N + D D+  L+S LY P VYTQ V PQQG    +KP +RRRR++K+ EGGG A  KKR
Sbjct: 1   MNNQIDEDHMALISQLY-PGVYTQMV-PQQGE---AKP-RRRRRKNKSGEGGGCAAAKKR 60

Query: 64  KLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYS 123
           KLSSEQV LLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYS
Sbjct: 61  KLSSEQVNLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYS 120

Query: 124 TLKKAHDSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTMEAV 183
           TLKK HD+VV++K  LESE++++KEQ+ +AK EI+++ E +E    SSNSPSSS+++EAV
Sbjct: 121 TLKKMHDNVVVEKCRLESEVLQLKEQIMDAKKEIQRLAERAE--GVSSNSPSSSLSVEAV 180

Query: 184 EEAAVVPLGELFFEEYEDVFYCMQDNNYNQGLNW 218
           E   +   G +  E Y+++FY   +NNY  G+ W
Sbjct: 181 EPPFLGEFG-VVSEGYDNMFYA-AENNYIHGMEW 204

[Close]

BLAST of Csa6G501990 vs. NCBI nr
Match: gi|645272939|ref|XP_008241637.1| (PREDICTED: homeobox-leucine zipper protein ATHB-40 [Prunus mume])

HSP 1 Score: 241.1 bits (614), Expect = 1.8e-60
Identity = 132/207 (63.77%), Postives = 160/207 (77.29%), Query Frame = 1


Query: 11  DNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSKAKEGGGAAGLKKRKLSSEQV 70
           D+ LL+SHLY  +VYTQ ++PQQG    SKP KRRR++SK+ E GGA G KKRKL++EQV
Sbjct: 14  DHMLLISHLYPSDVYTQ-IVPQQGA---SKP-KRRRKKSKSGEAGGA-GHKKRKLTAEQV 73

Query: 71  KLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHD 130
            LLE+NFGNEHKLESE+KDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYS LKK HD
Sbjct: 74  NLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKEHD 133

Query: 131 SVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTMEAVEEAAVVP 190
           + V +   LESE+ K+KEQL EA+ EI+++    +    SSNSPSSS++M+A++      
Sbjct: 134 NTVSENRKLESEMSKLKEQLSEAEKEIQRLSVRVD-HGGSSNSPSSSLSMDAIDPPF--- 193

Query: 191 LGELFFEEYEDVFYCMQDNNYNQGLNW 218
           LGE   EEY+DVFY M  NNY  G+ W
Sbjct: 194 LGEFGVEEYDDVFY-MPQNNYIHGMEW 209

The following BLAST results are available for this feature:

BLAST of Csa6G501990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATB40_ARATH	5.0e-50	52.73	Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 ...	[more]
ATB21_ARATH	1.8e-47	52.65	Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana GN=ATHB-21 PE=2 ...	[more]
ATB53_ARATH	1.2e-43	49.77	Homeobox-leucine zipper protein ATHB-53 OS=Arabidopsis thaliana GN=ATHB-53 PE=2 ...	[more]
HOX14_ORYSJ	1.9e-33	53.57	Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. japonica GN=HOX14 P...	[more]
HOX14_ORYSI	1.9e-33	53.57	Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. indica GN=HOX14 PE=...	[more]

BLAST of Csa6G501990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGE8_CUCSA	2.6e-122	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G501990 PE=4 SV=1	[more]
M5WGL9_PRUPE	8.0e-63	65.22	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011343mg PE=4 SV=1	[more]
W9RLH1_9ROSA	1.2e-61	63.08	Homeobox-leucine zipper protein ATHB-40 OS=Morus notabilis GN=L484_009043 PE=4 S...	[more]
A0A067KIZ9_JATCU	1.3e-57	62.50	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12260 PE=4 SV=1	[more]
A0A103Y578_CYNCS	3.3e-56	57.27	Helix-turn-helix motif-containing protein OS=Cynara cardunculus var. scolymus GN...	[more]

BLAST of Csa6G501990 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G36740.1	2.8e-51	52.73	homeobox protein 40	[more]
AT2G18550.1	1.0e-48	52.65	homeobox protein 21	[more]
AT5G66700.1	6.8e-45	49.77	homeobox 53	[more]
AT4G40060.1	1.2e-25	45.45	homeobox protein 16	[more]
AT1G69780.1	6.6e-24	46.09	Homeobox-leucine zipper protein family	[more]

BLAST of Csa6G501990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451501\|ref\|XP_004143500.1\|	3.8e-122	100.00	PREDICTED: homeobox-leucine zipper protein ATHB-40 [Cucumis sativus]	[more]
gi\|659081044\|ref\|XP_008441120.1\|	1.6e-109	96.26	PREDICTED: homeobox-leucine zipper protein ATHB-40, partial [Cucumis melo]	[more]
gi\|595820944\|ref\|XP_007204731.1\|	1.2e-62	65.22	hypothetical protein PRUPE_ppa011343mg [Prunus persica]	[more]
gi\|703111325\|ref\|XP_010099829.1\|	1.7e-61	63.08	Homeobox-leucine zipper protein ATHB-40 [Morus notabilis]	[more]
gi\|645272939\|ref\|XP_008241637.1\|	1.8e-60	63.77	PREDICTED: homeobox-leucine zipper protein ATHB-40 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000047	HTH_motif
IPR001356	Homeobox_dom
IPR009057	Homeobox-like_sf
IPR017970	Homeobox_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0043565	sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU120181	cucumber EST collection version 3.0	transcribed_cluster
CU157556	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G501990.1	Csa6G501990.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU120181	CU120181	transcribed_cluster
CU157556	CU157556	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000047	Helix-turn-helix motif	PRINTS	PR00031	HTHREPRESSR	coord: 96..112 score: 1.4E-5coord: 87..96 score: 1.
IPR001356	Homeobox domain	PFAM	PF00046	Homeobox	coord: 62..115 score: 5.1
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 59..120 score: 2.5
IPR001356	Homeobox domain	PROFILE	PS50071	HOMEOBOX_2	coord: 56..116 score: 16
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 63..123 score: 9.6
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 61..125 score: 2.95
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 91..114 scor
None	No IPR available	unknown	Coil	Coil	coord: 108..167 scor
None	No IPR available	PANTHER	PTHR24326	FAMILY NOT NAMED	coord: 37..217 score: 2.2
None	No IPR available	PANTHER	PTHR24326:SF281	HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-21-RELATED	coord: 37..217 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G501990	Cla014193	Watermelon (97103) v1	cuwmB500
Csa6G501990	MELO3C007809	Melon (DHL92) v3.5.1	cumeB503
Csa6G501990	ClCG01G019340	Watermelon (Charleston Gray)	cuwcgB432
Csa6G501990	Lsi01G006990	Bottle gourd (USVL1VR-Ls)	culsiB434
Csa6G501990	MELO3C007809.2	Melon (DHL92) v3.6.1	cumedB483
Csa6G501990	Cla97C01G018750	Watermelon (97103) v2	cuwmbB412
Csa6G501990	Bhi03G000982	Wax gourd	cuwgoB620
Csa6G501990	CSPI06G30800	Wild cucumber (PI 183967)	cpicuB313
Csa6G501990	Cucsa.104950	Cucumber (Gy14) v1	cgycuB121
Csa6G501990	CmaCh07G005040	Cucurbita maxima (Rimu)	cmacuB877
Csa6G501990	CmaCh03G007690	Cucurbita maxima (Rimu)	cmacuB681
Csa6G501990	CmoCh07G005020	Cucurbita moschata (Rifu)	cmocuB865
Csa6G501990	CmoCh03G007980	Cucurbita moschata (Rifu)	cmocuB670
Csa6G501990	Cp4.1LG19g09540	Cucurbita pepo (Zucchini)	cpecuB503
Csa6G501990	Cp4.1LG10g00850	Cucurbita pepo (Zucchini)	cpecuB085
Csa6G501990	CsGy6G030330	Cucumber (Gy14) v2	cgybcuB281
Csa6G501990	Carg16034	Silver-seed gourd	carcuB0776

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G501990	Cucumber (Chinese Long) v2	cucuB065
Csa6G501990	Cucurbita moschata (Rifu)	cmocuB181
Csa6G501990	Melon (DHL92) v3.5.1	cumeB480
Csa6G501990	Watermelon (Charleston Gray)	cuwcgB512
Csa6G501990	Watermelon (97103) v1	cuwmB473
Csa6G501990	Cucurbita pepo (Zucchini)	cpecuB846
Csa6G501990	Bottle gourd (USVL1VR-Ls)	culsiB469
Csa6G501990	Bottle gourd (USVL1VR-Ls)	culsiB484
Csa6G501990	Cucumber (Gy14) v2	cgybcuB077
Csa6G501990	Melon (DHL92) v3.6.1	cumedB459
Csa6G501990	Silver-seed gourd	carcuB0441
Csa6G501990	Silver-seed gourd	carcuB0996
Csa6G501990	Watermelon (97103) v2	cuwmbB503