Csa6G486980 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G486980
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 22788175 .. 22788503 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAATTCGTAGCTAATTGGTTTTGATCCACAATCATTAGTCTGTGATTAAAAACTCTCACCATCCTAAACTCGACCGTCATGGAGAAGAAAAACAACGACGATAAAAAGACTCCGATTGTGCTCAGGTCTGGTGAAACAAAGAAAAAGTCGACGTCCAATTGGTCGCCGGCGATGGATAATATAGTGAAGCTCTCCCCCAAGATGTCATTGGGTGAAGCACTGGATGAACTCGATGCCAAAATCGATGCTATTCTTTATTCTTCTTCACGCAGGACCAAGAGATTGCCAATTTTTGAGGAGATTTGTCCAATTCATTCATCTTCGTGA

mRNA sequence

ATGGAGAAGAAAAACAACGACGATAAAAAGACTCCGATTGTGCTCAGGTCTGGTGAAACAAAGAAAAAGTCGACGTCCAATTGGTCGCCGGCGATGGATAATATAGTGAAGCTCTCCCCCAAGATGTCATTGGGTGAAGCACTGGATGAACTCGATGCCAAAATCGATGCTATTCTTTATTCTTCTTCACGCAGGACCAAGAGATTGCCAATTTTTGAGGAGATTTGTCCAATTCATTCATCTTCGTGA

Coding sequence (CDS)

ATGGAGAAGAAAAACAACGACGATAAAAAGACTCCGATTGTGCTCAGGTCTGGTGAAACAAAGAAAAAGTCGACGTCCAATTGGTCGCCGGCGATGGATAATATAGTGAAGCTCTCCCCCAAGATGTCATTGGGTGAAGCACTGGATGAACTCGATGCCAAAATCGATGCTATTCTTTATTCTTCTTCACGCAGGACCAAGAGATTGCCAATTTTTGAGGAGATTTGTCCAATTCATTCATCTTCGTGA

Protein sequence

MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILYSSSRRTKRLPIFEEICPIHSSS*
Homology
[Close]
BLAST of Csa6G486980 vs. TrEMBL
Match: A0A0A0KKZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486980 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.3e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY 60
          MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY
Sbjct: 1  MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY 60

Query: 61 SSSRRTKRLPIFEEICPIHSSS 83
          SSSRRTKRLPIFEEICPIHSSS
Sbjct: 61 SSSRRTKRLPIFEEICPIHSSS 82

[Close]
BLAST of Csa6G486980 vs. NCBI nr
Match: gi|700193222|gb|KGN48426.1| (hypothetical protein Csa_6G486980 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 6.2e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY 60
          MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY
Sbjct: 1  MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY 60

Query: 61 SSSRRTKRLPIFEEICPIHSSS 83
          SSSRRTKRLPIFEEICPIHSSS
Sbjct: 61 SSSRRTKRLPIFEEICPIHSSS 82

The following BLAST results are available for this feature:
BLAST of Csa6G486980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKZ2_CUCSA4.3e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486980 PE=4 SV=1[more]
BLAST of Csa6G486980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193222|gb|KGN48426.1|6.2e-38100.00hypothetical protein Csa_6G486980 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU117010cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G486980.1Csa6G486980.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU117010CU117010transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G486980Cla008490Watermelon (97103) v1cuwmB502
Csa6G486980MELO3C007473Melon (DHL92) v3.5.1cumeB503
Csa6G486980ClCG01G016030Watermelon (Charleston Gray)cuwcgB432
Csa6G486980Lsi01G010770Bottle gourd (USVL1VR-Ls)culsiB434
Csa6G486980MELO3C007473.2Melon (DHL92) v3.6.1cumedB483
Csa6G486980Cla97C01G015020Watermelon (97103) v2cuwmbB412
Csa6G486980CSPI06G27180Wild cucumber (PI 183967)cpicuB313
Csa6G486980Cp4.1LG10g03060Cucurbita pepo (Zucchini)cpecuB085
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G486980Watermelon (97103) v2cuwmbB437
Csa6G486980Wax gourdcuwgoB615
Csa6G486980Wax gourdcuwgoB622
Csa6G486980Cucumber (Chinese Long) v2cucuB074
Csa6G486980Cucumber (Gy14) v1cgycuB121
Csa6G486980Cucumber (Gy14) v1cgycuB359
Csa6G486980Cucurbita maxima (Rimu)cmacuB627
Csa6G486980Cucurbita maxima (Rimu)cmacuB681
Csa6G486980Cucurbita maxima (Rimu)cmacuB877
Csa6G486980Cucurbita moschata (Rifu)cmocuB550
Csa6G486980Cucurbita moschata (Rifu)cmocuB619
Csa6G486980Cucurbita moschata (Rifu)cmocuB670
Csa6G486980Cucurbita moschata (Rifu)cmocuB865
Csa6G486980Melon (DHL92) v3.5.1cumeB434
Csa6G486980Watermelon (Charleston Gray)cuwcgB447
Csa6G486980Watermelon (97103) v1cuwmB531
Csa6G486980Cucurbita pepo (Zucchini)cpecuB503
Csa6G486980Cucurbita pepo (Zucchini)cpecuB764
Csa6G486980Cucumber (Gy14) v2cgybcuB084
Csa6G486980Cucumber (Gy14) v2cgybcuB281
Csa6G486980Melon (DHL92) v3.6.1cumedB414
Csa6G486980Silver-seed gourdcarcuB0441
Csa6G486980Silver-seed gourdcarcuB0826