ClCG01G016030 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G016030
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 30348732 .. 30348977 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAGAAAAACAGCGACGAGAAAAGAAATTCGATTGTGGTTAGGTATGGGGAAACAAGAAGAAAGGCAACGCCGTATTGGTCGCCGGCGATGGATAATATAGTGCAAGTTTCTTACAAGAAGCTATTGATTGAAGCAATGGATCAAATCGATTCGAAAATCGATCGTGTTCTTTATTCTTCCAACAAGACCAGGAGATTACCAATTTTTGATGAGATTTGTCCATTTTATTCCTCTTTGTGA

mRNA sequence

ATGGACAAGAAAAACAGCGACGAGAAAAGAAATTCGATTGTGGTTAGGTATGGGGAAACAAGAAGAAAGGCAACGCCGTATTGGTCGCCGGCGATGGATAATATAGTGCAAGTTTCTTACAAGAAGCTATTGATTGAAGCAATGGATCAAATCGATTCGAAAATCGATCGTGTTCTTTATTCTTCCAACAAGACCAGGAGATTACCAATTTTTGATGAGATTTGTCCATTTTATTCCTCTTTGTGA

Coding sequence (CDS)

ATGGACAAGAAAAACAGCGACGAGAAAAGAAATTCGATTGTGGTTAGGTATGGGGAAACAAGAAGAAAGGCAACGCCGTATTGGTCGCCGGCGATGGATAATATAGTGCAAGTTTCTTACAAGAAGCTATTGATTGAAGCAATGGATCAAATCGATTCGAAAATCGATCGTGTTCTTTATTCTTCCAACAAGACCAGGAGATTACCAATTTTTGATGAGATTTGTCCATTTTATTCCTCTTTGTGA

Protein sequence

MDKKNSDEKRNSIVVRYGETRRKATPYWSPAMDNIVQVSYKKLLIEAMDQIDSKIDRVLYSSNKTRRLPIFDEICPFYSSL
Homology
[Close]
BLAST of ClCG01G016030 vs. TrEMBL
Match: A0A0A0KKZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486980 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.8e-20
Identity = 49/81 (60.49%), Postives = 69/81 (85.19%), Query Frame = 1 

Query: 1  MDKKNSDEKRNSIVVRYGETRRKATPYWSPAMDNIVQVSYKKLLIEAMDQIDSKIDRVLY 60
          M+KKN+D+K+  IV+R GET++K+T  WSPAMDNIV++S K  L EA+D++D+KID +LY
Sbjct: 1  MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY 60

Query: 61 SSN-KTRRLPIFDEICPFYSS 81
          SS+ +T+RLPIF+EICP +SS
Sbjct: 61 SSSRRTKRLPIFEEICPIHSS 81

[Close]
BLAST of ClCG01G016030 vs. NCBI nr
Match: gi|700193222|gb|KGN48426.1| (hypothetical protein Csa_6G486980 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 9.7e-20
Identity = 49/81 (60.49%), Postives = 69/81 (85.19%), Query Frame = 1 

Query: 1  MDKKNSDEKRNSIVVRYGETRRKATPYWSPAMDNIVQVSYKKLLIEAMDQIDSKIDRVLY 60
          M+KKN+D+K+  IV+R GET++K+T  WSPAMDNIV++S K  L EA+D++D+KID +LY
Sbjct: 1  MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY 60

Query: 61 SSN-KTRRLPIFDEICPFYSS 81
          SS+ +T+RLPIF+EICP +SS
Sbjct: 61 SSSRRTKRLPIFEEICPIHSS 81

The following BLAST results are available for this feature:
BLAST of ClCG01G016030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKZ2_CUCSA6.8e-2060.49Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486980 PE=4 SV=1[more]
BLAST of ClCG01G016030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193222|gb|KGN48426.1|9.7e-2060.49hypothetical protein Csa_6G486980 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016491 oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G016030.1ClCG01G016030.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G016030Csa6G486980Cucumber (Chinese Long) v2cuwcgB432
ClCG01G016030MELO3C007473Melon (DHL92) v3.5.1mewcgB514
ClCG01G016030Cla008490Watermelon (97103) v1wcgwmB153
ClCG01G016030Cla97C01G015020Watermelon (97103) v2wcgwmbB089
ClCG01G016030CSPI06G27180Wild cucumber (PI 183967)cpiwcgB453
ClCG01G016030Lsi01G010770Bottle gourd (USVL1VR-Ls)lsiwcgB127
ClCG01G016030Cp4.1LG10g03060Cucurbita pepo (Zucchini)cpewcgB061
ClCG01G016030MELO3C007473.2Melon (DHL92) v3.6.1medwcgB509
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G016030Cucurbita pepo (Zucchini)cpewcgB425
ClCG01G016030Cucurbita pepo (Zucchini)cpewcgB643
ClCG01G016030Cucumber (Gy14) v2cgybwcgB113
ClCG01G016030Cucumber (Gy14) v2cgybwcgB399
ClCG01G016030Melon (DHL92) v3.6.1medwcgB082
ClCG01G016030Silver-seed gourdcarwcgB0397
ClCG01G016030Silver-seed gourdcarwcgB0778
ClCG01G016030Cucumber (Chinese Long) v3cucwcgB131
ClCG01G016030Cucumber (Chinese Long) v3cucwcgB455
ClCG01G016030Watermelon (97103) v2wcgwmbB100
ClCG01G016030Wax gourdwcgwgoB222
ClCG01G016030Watermelon (Charleston Gray)wcgwcgB087
ClCG01G016030Cucumber (Gy14) v1cgywcgB134
ClCG01G016030Cucumber (Gy14) v1cgywcgB439
ClCG01G016030Cucurbita maxima (Rimu)cmawcgB754
ClCG01G016030Cucurbita maxima (Rimu)cmawcgB479
ClCG01G016030Cucurbita maxima (Rimu)cmawcgB521
ClCG01G016030Cucurbita maxima (Rimu)cmawcgB579
ClCG01G016030Cucurbita moschata (Rifu)cmowcgB755
ClCG01G016030Cucurbita moschata (Rifu)cmowcgB478
ClCG01G016030Cucurbita moschata (Rifu)cmowcgB519
ClCG01G016030Cucurbita moschata (Rifu)cmowcgB575
ClCG01G016030Wild cucumber (PI 183967)cpiwcgB123
ClCG01G016030Cucumber (Chinese Long) v2cuwcgB116
ClCG01G016030Melon (DHL92) v3.5.1mewcgB084