MELO3C007473 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C007473
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Tetratricopeptide repeat (TPR)-like superfamily protein
Location	chr8 : 3029056 .. 3029594 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATCGTAGGTTGCTGGTTTCAATCGAGAATTCTTCTGTGATTAAACTAAAACTCGACGGTCATGGAGAAGAAAAACAACGACGATAAAAAGGCTCCGATTGTGCTCAGGTCTGGTGAAACGAGAAAAAAATCGACGGCGAATTGGTCTCCGGCGATGGATAATATAGTGAAGCTCTCGCGCAAGATGACATTGGGTAAAGCACTGGATGAACTCGATTCGAAAATCGATGCTATTCTTTATTCTCCACGCAAGACCAAGAGATTGCCAATTTTTGAGGAGATTTGTCCAATTCATTCCTCTTCGTGAGTTTTTTTCTATTTTTTTTCTTTTTAAATTCTTTGCGAGTTTGATTTATTTTGTTGATTCAAGATGGAGATGGTGGAAGAGATCATAGTTCCAATTGATCAGGGAATTATGATTAGCCATTTTTTTCTATGGTTTTGACTTTGAATTTGGTCAAGAATTATTGTAATAAATAATCCACCATTAGATTTCTATGAGATTTGTTTATTCAATTTTTTTCATTCAATAATTAAG

mRNA sequence

GAATCGTAGGTTGCTGGTTTCAATCGAGAATTCTTCTGTGATTAAACTAAAACTCGACGGTCATGGAGAAGAAAAACAACGACGATAAAAAGGCTCCGATTGTGCTCAGGTCTGGTGAAACGAGAAAAAAATCGACGGCGAATTGGTCTCCGGCGATGGATAATATAGTGAAGCTCTCGCGCAAGATGACATTGGGTAAAGCACTGGATGAACTCGATTCGAAAATCGATGCTATTCTTTATTCTCCACGCAAGACCAAGAGATTGCCAATTTTTGAGGAGATTTGTCCAATTCATTCCTCTTCGTGAGTTTTTTTCTATTTTTTTTCTTTTTAAATTCTTTGCGAGTTTGATTTATTTTGTTGATTCAAGATGGAGATGGTGGAAGAGATCATAGTTCCAATTGATCAGGGAATTATGATTAGCCATTTTTTTCTATGGTTTTGACTTTGAATTTGGTCAAGAATTATTGTAATAAATAATCCACCATTAGATTTCTATGAGATTTGTTTATTCAATTTTTTTCATTCAATAATTAAG

Coding sequence (CDS)

ATGGAGAAGAAAAACAACGACGATAAAAAGGCTCCGATTGTGCTCAGGTCTGGTGAAACGAGAAAAAAATCGACGGCGAATTGGTCTCCGGCGATGGATAATATAGTGAAGCTCTCGCGCAAGATGACATTGGGTAAAGCACTGGATGAACTCGATTCGAAAATCGATGCTATTCTTTATTCTCCACGCAAGACCAAGAGATTGCCAATTTTTGAGGAGATTTGTCCAATTCATTCCTCTTCGTGA

Protein sequence

MEKKNNDDKKAPIVLRSGETRKKSTANWSPAMDNIVKLSRKMTLGKALDELDSKIDAILYSPRKTKRLPIFEEICPIHSSS*

Homology

[Close]

BLAST of MELO3C007473 vs. TrEMBL
Match: A0A0A0KKZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486980 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.8e-32
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 1


Query: 1  MEKKNNDDKKAPIVLRSGETRKKSTANWSPAMDNIVKLSRKMTLGKALDELDSKIDAILY 60
          MEKKNNDDKK PIVLRSGET+KKST+NWSPAMDNIVKLS KM+LG+ALDELD+KIDAILY
Sbjct: 1  MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY 60

Query: 61 -SPRKTKRLPIFEEICPIHSSS 82
           S R+TKRLPIFEEICPIHSSS
Sbjct: 61 SSSRRTKRLPIFEEICPIHSSS 82

[Close]

BLAST of MELO3C007473 vs. NCBI nr
Match: gi|700193222|gb|KGN48426.1| (hypothetical protein Csa_6G486980 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 1


Query: 1  MEKKNNDDKKAPIVLRSGETRKKSTANWSPAMDNIVKLSRKMTLGKALDELDSKIDAILY 60
          MEKKNNDDKK PIVLRSGET+KKST+NWSPAMDNIVKLS KM+LG+ALDELD+KIDAILY
Sbjct: 1  MEKKNNDDKKTPIVLRSGETKKKSTSNWSPAMDNIVKLSPKMSLGEALDELDAKIDAILY 60

Query: 61 -SPRKTKRLPIFEEICPIHSSS 82
           S R+TKRLPIFEEICPIHSSS
Sbjct: 61 SSSRRTKRLPIFEEICPIHSSS 82

The following BLAST results are available for this feature:

BLAST of MELO3C007473 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKZ2_CUCSA	7.8e-32	87.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486980 PE=4 SV=1	[more]

BLAST of MELO3C007473 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193222\|gb\|KGN48426.1\|	1.1e-31	87.80	hypothetical protein Csa_6G486980 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU58261	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C007473T1	MELO3C007473T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU58261	MU58261	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C007473	Csa6G486980	Cucumber (Chinese Long) v2	cumeB503
MELO3C007473	Cla008490	Watermelon (97103) v1	mewmB573
MELO3C007473	ClCG01G016030	Watermelon (Charleston Gray)	mewcgB514
MELO3C007473	Cla97C01G015020	Watermelon (97103) v2	mewmbB513
MELO3C007473	CSPI06G27180	Wild cucumber (PI 183967)	cpimeB508
MELO3C007473	Lsi01G010770	Bottle gourd (USVL1VR-Ls)	lsimeB156
MELO3C007473	Cp4.1LG10g03060	Cucurbita pepo (Zucchini)	cpemeB060

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C007473	Cucurbita moschata (Rifu)	cmomeB605
MELO3C007473	Wild cucumber (PI 183967)	cpimeB159
MELO3C007473	Cucumber (Chinese Long) v2	cumeB159
MELO3C007473	Cucurbita pepo (Zucchini)	cpemeB449
MELO3C007473	Cucumber (Gy14) v2	cgybmeB444
MELO3C007473	Silver-seed gourd	carmeB0414
MELO3C007473	Silver-seed gourd	carmeB0807
MELO3C007473	Cucumber (Chinese Long) v3	cucmeB161
MELO3C007473	Cucumber (Chinese Long) v3	cucmeB517
MELO3C007473	Wax gourd	mewgoB632
MELO3C007473	Cucurbita moschata (Rifu)	cmomeB793
MELO3C007473	Melon (DHL92) v3.5.1	memeB058
MELO3C007473	Cucumber (Gy14) v1	cgymeB131
MELO3C007473	Cucumber (Gy14) v1	cgymeB425
MELO3C007473	Cucurbita maxima (Rimu)	cmameB617
MELO3C007473	Cucurbita maxima (Rimu)	cmameB809