Csa6G454390 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G454390
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 21779249 .. 21779838 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAGTTGACGATGTTAAGATCAATCAAAAGCGTAAAATGGGGGAAGTGGATGAAAAAACAGAGTCCCAAATCTCAGAAAAAGCCCTAACTATAATTCCATGGTGAGAAGGAGAATTCAATTGCAAGAAACACCGAAGAAGCCCTCTCAAATCTTCCTTCGAGTATATCTCGTTCTCCAGAATCATTTGAACCATCGAGTGTCGGAAATCCAGGTACGGATCGTCCGAATCCTTCTCAACAGCAACACTCTCCCCCCCGCTCCGACCGAAGCCTCGGAACGTGATCGAGGTTCTGGTCTCGGAGTCGGAGTCGGAGAAGGGAGGGGATTCGGAGTCGGAGGAAGCGGAGGAGAAGCGATGATGATGATGGTTGGGGGATTTGGGGGAGGGCTTTGGTTTGAGGTGGTGGAAGAAGTGAGAGAGGAGCTTAGGTCTGCAAATGTTGAGATCGACGGAGAGGGAAGTGAGTTGGAGATTTCGCCGGGGAGCCGCCATTGTTGTTGAAGTTGGAGAGAGGGTGTGTTGTGTGGCTTTGGGTTTGAAGAGAGAGAGTTGGAATTTGGGGAATGAGTTTTAGAAAACCGTTTGCG

mRNA sequence

ATGGTGAGAAGGAGAATTCAATTGCAAGAAACACCGAAGAAGCCCTCTCAAATCTTCCTTCGAGTATATCTCGTTCTCCAGAATCATTTGAACCATCGAGTGTCGGAAATCCAGGTACGGATCGTCCGAATCCTTCTCAACAGCAACACTCTCCCCCCCGCTCCGACCGAAGCCTCGGAACGTGATCGAGGTTCTGGTCTCGGAGTCGGAGTCGGAGAAGGGAGGGGATTCGGAGTCGGAGGAAGCGGAGGAGAAGCGATGATGATGATGGTTGGGGGATTTGGGGGAGGGCTTTGGTTTGAGGTGGTGGAAGAAGTGAGAGAGGAGCTTAGGTCTGCAAATGTTGAGATCGACGGAGAGGGAAGTGAGTTGGAGATTTCGCCGGGGAGCCGCCATTGTTGTTGA

Coding sequence (CDS)

ATGGTGAGAAGGAGAATTCAATTGCAAGAAACACCGAAGAAGCCCTCTCAAATCTTCCTTCGAGTATATCTCGTTCTCCAGAATCATTTGAACCATCGAGTGTCGGAAATCCAGGTACGGATCGTCCGAATCCTTCTCAACAGCAACACTCTCCCCCCCGCTCCGACCGAAGCCTCGGAACGTGATCGAGGTTCTGGTCTCGGAGTCGGAGTCGGAGAAGGGAGGGGATTCGGAGTCGGAGGAAGCGGAGGAGAAGCGATGATGATGATGGTTGGGGGATTTGGGGGAGGGCTTTGGTTTGAGGTGGTGGAAGAAGTGAGAGAGGAGCTTAGGTCTGCAAATGTTGAGATCGACGGAGAGGGAAGTGAGTTGGAGATTTCGCCGGGGAGCCGCCATTGTTGTTGA

Protein sequence

MVRRRIQLQETPKKPSQIFLRVYLVLQNHLNHRVSEIQVRIVRILLNSNTLPPAPTEASERDRGSGLGVGVGEGRGFGVGGSGGEAMMMMVGGFGGGLWFEVVEEVREELRSANVEIDGEGSELEISPGSRHCC*
Homology
[Close]
BLAST of Csa6G454390 vs. TrEMBL
Match: A0A0A0KIS5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454390 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 9.1e-70
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MVRRRIQLQETPKKPSQIFLRVYLVLQNHLNHRVSEIQVRIVRILLNSNTLPPAPTEASE 60
           MVRRRIQLQETPKKPSQIFLRVYLVLQNHLNHRVSEIQVRIVRILLNSNTLPPAPTEASE
Sbjct: 1   MVRRRIQLQETPKKPSQIFLRVYLVLQNHLNHRVSEIQVRIVRILLNSNTLPPAPTEASE 60

Query: 61  RDRGSGLGVGVGEGRGFGVGGSGGEAMMMMVGGFGGGLWFEVVEEVREELRSANVEIDGE 120
           RDRGSGLGVGVGEGRGFGVGGSGGEAMMMMVGGFGGGLWFEVVEEVREELRSANVEIDGE
Sbjct: 61  RDRGSGLGVGVGEGRGFGVGGSGGEAMMMMVGGFGGGLWFEVVEEVREELRSANVEIDGE 120

Query: 121 GSELEISPGSRHCC 135
           GSELEISPGSRHCC
Sbjct: 121 GSELEISPGSRHCC 134

[Close]
BLAST of Csa6G454390 vs. NCBI nr
Match: gi|700193088|gb|KGN48292.1| (hypothetical protein Csa_6G454390 [Cucumis sativus])

HSP 1 Score: 270.8 bits (691), Expect = 1.3e-69
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MVRRRIQLQETPKKPSQIFLRVYLVLQNHLNHRVSEIQVRIVRILLNSNTLPPAPTEASE 60
           MVRRRIQLQETPKKPSQIFLRVYLVLQNHLNHRVSEIQVRIVRILLNSNTLPPAPTEASE
Sbjct: 1   MVRRRIQLQETPKKPSQIFLRVYLVLQNHLNHRVSEIQVRIVRILLNSNTLPPAPTEASE 60

Query: 61  RDRGSGLGVGVGEGRGFGVGGSGGEAMMMMVGGFGGGLWFEVVEEVREELRSANVEIDGE 120
           RDRGSGLGVGVGEGRGFGVGGSGGEAMMMMVGGFGGGLWFEVVEEVREELRSANVEIDGE
Sbjct: 61  RDRGSGLGVGVGEGRGFGVGGSGGEAMMMMVGGFGGGLWFEVVEEVREELRSANVEIDGE 120

Query: 121 GSELEISPGSRHCC 135
           GSELEISPGSRHCC
Sbjct: 121 GSELEISPGSRHCC 134

The following BLAST results are available for this feature:
BLAST of Csa6G454390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIS5_CUCSA9.1e-70100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454390 PE=4 SV=1[more]
BLAST of Csa6G454390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193088|gb|KGN48292.1|1.3e-69100.00hypothetical protein Csa_6G454390 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU150127cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G454390.1Csa6G454390.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU150127CU150127transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 103..123
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G454390Bhi03G001392Wax gourdcuwgoB631
Csa6G454390CSPI06G25750Wild cucumber (PI 183967)cpicuB313
Csa6G454390Cucsa.083680Cucumber (Gy14) v1cgycuB082
Csa6G454390Cp4.1LG19g05040Cucurbita pepo (Zucchini)cpecuB503
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G454390Cucurbita maxima (Rimu)cmacuB267
Csa6G454390Cucurbita maxima (Rimu)cmacuB641
Csa6G454390Cucurbita maxima (Rimu)cmacuB681
Csa6G454390Cucurbita maxima (Rimu)cmacuB840
Csa6G454390Cucurbita maxima (Rimu)cmacuB878
Csa6G454390Cucurbita moschata (Rifu)cmocuB253
Csa6G454390Cucurbita moschata (Rifu)cmocuB630
Csa6G454390Cucurbita moschata (Rifu)cmocuB670
Csa6G454390Cucurbita moschata (Rifu)cmocuB828
Csa6G454390Cucurbita moschata (Rifu)cmocuB865
Csa6G454390Melon (DHL92) v3.5.1cumeB484
Csa6G454390Melon (DHL92) v3.5.1cumeB508
Csa6G454390Watermelon (Charleston Gray)cuwcgB424
Csa6G454390Watermelon (Charleston Gray)cuwcgB444
Csa6G454390Watermelon (Charleston Gray)cuwcgB464
Csa6G454390Watermelon (97103) v1cuwmB452
Csa6G454390Watermelon (97103) v1cuwmB505
Csa6G454390Watermelon (97103) v1cuwmB518
Csa6G454390Cucurbita pepo (Zucchini)cpecuB085
Csa6G454390Cucurbita pepo (Zucchini)cpecuB624
Csa6G454390Cucurbita pepo (Zucchini)cpecuB759
Csa6G454390Cucurbita pepo (Zucchini)cpecuB876
Csa6G454390Bottle gourd (USVL1VR-Ls)culsiB421
Csa6G454390Bottle gourd (USVL1VR-Ls)culsiB435
Csa6G454390Bottle gourd (USVL1VR-Ls)culsiB445
Csa6G454390Cucumber (Gy14) v2cgybcuB137
Csa6G454390Cucumber (Gy14) v2cgybcuB281
Csa6G454390Melon (DHL92) v3.6.1cumedB464
Csa6G454390Melon (DHL92) v3.6.1cumedB487
Csa6G454390Silver-seed gourdcarcuB0267
Csa6G454390Silver-seed gourdcarcuB0278
Csa6G454390Silver-seed gourdcarcuB0826
Csa6G454390Silver-seed gourdcarcuB0943
Csa6G454390Watermelon (97103) v2cuwmbB418
Csa6G454390Watermelon (97103) v2cuwmbB434
Csa6G454390Watermelon (97103) v2cuwmbB455
Csa6G454390Cucumber (Chinese Long) v2cucuB110
Csa6G454390Cucumber (Gy14) v1cgycuB346